Panther_Function	Panther_Process	Species	Source	Search_Key	Transcript	ILMN_Gene	Source_Reference_ID	RefSeq_ID	Unigene_ID	Entrez_Gene_ID	GI	Accession	Symbol	Protein_Product	Probe_Id	Array_Address_Id	Probe_Type	Probe_Start	Probe_Sequence	Chromosome	Probe_Chr_Orientation	Probe_Coordinates	Cytoband	Definition	Ontology_Component	Ontology_Process	Ontology_Function	Synonyms	Obsolete_Probe_Id
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_62644958-S	ILMN_57573	LOC499782	XM_575115.1	XM_575115.1		499782	62644958	XM_575115.1	LOC499782	XP_575115.1	ILMN_1356720	1570300	S	167	GAGAGTTGAGCTTTTCGGCCTATATCCGGCGTGGGCGGAGCAACATCCGT				3p11	"PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L12 (LOC499782), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]"	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]
		Rattus norvegicus	RefSeq	GI_62643181-S	ILMN_58017	LOC502515	XM_577999.1	XM_577999.1		502515	62643181	XM_577999.1	LOC502515	XP_577999.1	ILMN_1355539	6840575	S	4804	CACACTGCCTGGAGGGGGACAGGAAGATTGAACTGGACATCCTGGTGATG					"PREDICTED: Rattus norvegicus similar to AFL095Wp (LOC502515), mRNA."
Protease -> Serine protease	Protein metabolism and modification -> Proteolysis;Immunity and defense;Developmental processes -> Gametogenesis -> Spermatogenesis and motility	Rattus norvegicus	RefSeq	GI_20301967-S	ILMN_297955	PRSS8	NM_138836.1	NM_138836.1		192107	20301967	NM_138836.1	Prss8	NP_620191.1	ILMN_1365415	4200670	S	2079	GGTTTCACCTTCACGGGATGAGAACAAAAGGGAGCTTTGGACCTGGGGGG	1	-	187210635-187210684	1q36	"Rattus norvegicus protease, serine, 8 (prostasin) (Prss8), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mineralocorticoid stimulus. Mineralocorticoids are hormonal C21 corticosteroids synthesized from cholesterol and characterized by their similarity to aldosterone. Mineralocorticoids act primarily on water and electrolyte balance [goid 51385] [evidence IEP]"	"Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 8236] [evidence IMP];  [goid 17080] [evidence IMP]"
Miscellaneous function -> Other miscellaneous function protein	Signal transduction -> Intracellular signaling cascade	Rattus norvegicus	RefSeq	GI_16758203-S	ILMN_269790	PICK1	NM_053460.1	NM_053460.1		84591	16758203	NM_053460.1	Pick1	NP_445912.1	ILMN_1361828	730072	S	1645	TGCAGGGAATGGGAGCTGGGTGGACATCCGAGGCTGTGACCAGTGTACCA	7	+	117232492-117232541	7q34	"Rattus norvegicus protein interacting with PRKCA 1 (Pick1), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IPI]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]"	"The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence ISS]; The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence IEA]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence ISS]; The directed movement of monoamines, organic compounds that contain one amino group that is connected to an aromatic ring by an ethylene group (-CH2-CH2-), into, out of, within or between cells [goid 15844] [evidence ISS]; The directed movement of dopamine into, out of, within or between cells. Dopamine is a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 15872] [evidence NAS]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence ISS]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence ISS]; Grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response [goid 43113] [evidence IMP]"	"Interacting selectively with protein kinase C [goid 5080] [evidence ISS]; Interacting selectively with protein kinase C [goid 5080] [evidence IDA]; Interacting selectively with protein kinase C [goid 5080] [evidence ISS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence ISS]; Interacting selectively with a receptor that possesses protein tyrosine kinase activity [goid 30971] [evidence TAS]; Interacting selectively with a metabotropic glutamate receptor. Metabotropic glutamate receptors are G-protein coupled receptors that bind glutamate and exert an effect through the regulation of enzyme activity [goid 35256] [evidence TAS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IDA]; Interacting selectively with an ephrin receptor [goid 46875] [evidence TAS]; Interacting selectively with a GTPase, any enzyme that catalyzes the hydrolysis of GTP [goid 51020] [evidence TAS]"	Prkcabp	Prkcabp
Miscellaneous function -> Other miscellaneous function protein	Signal transduction -> Cell communication -> Extracellular matrix protein-mediated signaling;Homeostasis -> Growth factor homeostasis	Rattus norvegicus	RefSeq	GI_62656954-S	ILMN_275442	IGFBP4	NM_001004274.2	NM_001004274.2		360622	70778853	NM_001004274.2	Igfbp4	NP_001004274.1	ILMN_2039365	5360327	A	959	AAGGGGGAGCTGGACTGCCACCAACTGGCTGACAGCCTCCAAGAGTGAGA	10	+	87833110-87833157:87833158-87833159	10q31	"Rattus norvegicus insulin-like growth factor binding protein 4 (Igfbp4), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]"	"Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEP]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence TAS]"	"Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence TAS]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence IEA]; Interacting selectively with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it [goid 5520] [evidence ISS]"	IGF-BP4; IBP4	IGF-BP4; IBP4
Oxidoreductase -> Oxidase	Electron transport -> Oxidative phosphorylation	Rattus norvegicus	RefSeq	GI_62658996-S	ILMN_289444	COX6A1	NM_012814.1	NM_012814.1		25282	77736543	NM_012814.1	Cox6a1	NP_036946.1	ILMN_1353631	730300	S	393	CCACAGCACTGATTTGGACCCTGACTCTTGTGTGTGGACCACGAAAGCCC	12	+	42532988-42533037	12q16	"Rattus norvegicus cytochrome c oxidase, subunit VIa, polypeptide 1 (Cox6a1), nuclear gene encoding mitochondrial protein, mRNA."	"A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space [goid 5740] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"		Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O [goid 4129] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]	COX6AL	COX6AL
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62647669-S	ILMN_54533	WBP1	XM_216198.4	XM_216198.4		297381	109472229	XM_216198.4	Wbp1	XP_216198.3	ILMN_1373448	6620576	S	1750	TAGTCAAGGAGCTGAGGGCTAGTGCCACCCAACCAGACCTGGAGGACCAT	4	-	117331447-117331496	4q34	"PREDICTED: Rattus norvegicus WW domain binding protein 1 (Wbp1), mRNA."			"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a WW domain of a protein, a small module composed of 40 amino acids and plays a role in mediating protein-protein interactions via proline-rich regions [goid 50699] [evidence ISS]; Interacting selectively with a WW domain of a protein, a small module composed of 40 amino acids and plays a role in mediating protein-protein interactions via proline-rich regions [goid 50699] [evidence ISS]"
Hydrolase -> Other hydrolase	Other metabolism	Rattus norvegicus	RefSeq	GI_12083670-S	ILMN_302590	OLAH	NM_022705.1	NM_022705.1		64669	12083670	NM_022705.1	Olah	NP_073196.1	ILMN_1371132	6660377	S	1229	GGAGCATTTATCTCTCTGGGGAAAGGACACGGCTGAAGAGGCGCACAGGC	17	+	86020896-86020945	17q12.3	"Rattus norvegicus oleoyl-ACP hydrolase (Olah), mRNA."		"The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]"	Catalysis of the reaction: oleoyl-[acyl-carrier protein] + H2O = [acyl-carrier protein] + oleate [goid 4320] [evidence IEA]; Catalysis of the hydrolysis of any ester bond [goid 16788] [evidence IEA]	Mch	Mch
Oxidoreductase -> Oxygenase;Oxidoreductase -> Hydroxylase	Neuronal activities -> Synaptic transmission;Other metabolism	Rattus norvegicus	RefSeq	GI_25742779-S	ILMN_296021	DBH	NM_013158.1	NM_013158.1		25699	25742779	NM_013158.1	Dbh	NP_037290.1	ILMN_1374582	3170167	S	2091	GAGTCCAGATTCAACTCCACAGGACCTCCCTTGCCTCCAGAACAGCCTTA	3	+	6069665-6069714	3p12	"Rattus norvegicus dopamine beta hydroxylase (Dbh), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]"	"The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 1816] [evidence ISS]; The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 1816] [evidence IEA]; The reorganization or renovation of existing blood vessels [goid 1974] [evidence ISS]; The reorganization or renovation of existing blood vessels [goid 1974] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence IEA]; Any process involved in the carrying out of an immune response by a leukocyte [goid 2443] [evidence ISS]; Any process involved in the carrying out of an immune response by a leukocyte [goid 2443] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid [goid 6548] [evidence IEA]; The chemical reactions and pathways involving any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine [goid 6584] [evidence IC ]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEP]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence ISS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence IEA]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence ISS]; Learning by associating a stimulus (the cause) with a particular outcome (the effect) [goid 8306] [evidence IEA]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IEA]; Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 9987] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence IEA]; Any homoeostatic process by which an organism maintains its internal body temperature at a relatively constant value. This is achieved by using metabolic processes to counteract fluctuations in the temperature of the environment [goid 42309] [evidence ISS]; Any homoeostatic process by which an organism maintains its internal body temperature at a relatively constant value. This is achieved by using metabolic processes to counteract fluctuations in the temperature of the environment [goid 42309] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42420] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42420] [evidence IEA]; The chemical reactions and pathways resulting in the formation of norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine [goid 42421] [evidence TAS]; The chemical reactions and pathways resulting in the formation of norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine [goid 42421] [evidence ISS]; The chemical reactions and pathways resulting in the formation of norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine [goid 42421] [evidence IEA]; The chemical reactions and pathways resulting in the formation of norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine [goid 42421] [evidence IMP]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; The response of an organism to a perceived external threat [goid 42596] [evidence ISS]; The response of an organism to a perceived external threat [goid 42596] [evidence IEA]; Female behaviors associated with the care and rearing of offspring [goid 42711] [evidence ISS]; Female behaviors associated with the care and rearing of offspring [goid 42711] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of vasoconstriction [goid 45907] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of vasoconstriction [goid 45907] [evidence IEA]; The chemical reactions and pathways involving octopamine, 1-(p-hydroxyphenyl)-2-aminoethanol. The D enantiomer is about one-tenth as active as norepihephrine and is found in the salivary glands of Octopus and Eledone species [goid 46333] [evidence IMP]; A change in the behavior of an organism as a result of an ethanol stimulus [goid 48149] [evidence ISS]; A change in the behavior of an organism as a result of an ethanol stimulus [goid 48149] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence IEA]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence ISS]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]"	"Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Catalysis of the reaction: 3,4-dihydroxyphenethylamine + ascorbate + O2 = noradrenaline + dehydroascorbate + H2O [goid 4500] [evidence TAS]; Catalysis of the reaction: 3,4-dihydroxyphenethylamine + ascorbate + O2 = noradrenaline + dehydroascorbate + H2O [goid 4500] [evidence IEA]; Catalysis of the reaction: 3,4-dihydroxyphenethylamine + ascorbate + O2 = noradrenaline + dehydroascorbate + H2O [goid 4500] [evidence IDA]; Catalysis of the reaction: 3,4-dihydroxyphenethylamine + ascorbate + O2 = noradrenaline + dehydroascorbate + H2O [goid 4500] [evidence IMP]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence IMP]; Interacting selectively with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species [goid 31418] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]"	DOPBHY	DOPBHY
		Rattus norvegicus	RefSeq	GI_62649883-S	ILMN_52371	LOC502991	XM_578499.1	XM_578499.1		502991	62649883	XM_578499.1	LOC502991	XP_578499.1	ILMN_1359915	6840397	S	312	CACCTCCACATTCAGCGGTACACCATGAAGATGCTGAACTTCCAGGGCGC					"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310005N03 (LOC502991), mRNA."
		Rattus norvegicus	RefSeq	GI_62661954-S	ILMN_47765	LOC502011	XM_577439.1	XM_577439.1		502011	62661954	XM_577439.1	LOC502011	XP_577439.1	ILMN_1366207	3290373	S	478	GCATTGTCTGGATTTCCTACGACCCCGCTCGCTTTCCGAGATACCTGCCC					"PREDICTED: Rattus norvegicus similar to IL-17D (LOC502011), mRNA."
		Rattus norvegicus	RefSeq	GI_62647604-S	ILMN_51437	LOC502843	XM_578343.1	XM_578343.1		502843	62647604	XM_578343.1	LOC502843	XP_578343.1	ILMN_1353331	5340142	S	205	AACTGCTTATCTATGGGGCATCCAACCGGTACACTGGAGTCCCTGATCGC				4q32	"PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain (LOC502843), mRNA."
Receptor;Extracellular matrix	Signal transduction -> Cell surface receptor mediated signal transduction -> Other receptor mediated signaling pathway;Developmental processes	Rattus norvegicus	RefSeq	GI_57528406-S	ILMN_264783	LRG1	NM_001009717.1	NM_001009717.1		367455	57528406	NM_001009717.1	Lrg1	NP_001009717.1	ILMN_1353943	1400168	S	989	CAGAGCTGGGGACCTTGTGAGGATGGCAACTGGGGTGCGAGCCAAGGGTA	Un|NW_047865.1	+	974723-974742:974743-974772		"Rattus norvegicus leucine-rich alpha-2-glycoprotein 1 (Lrg1), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]"		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC95065	MGC95065
		Rattus norvegicus	RefSeq	GI_62666981-S	ILMN_290144	RGD1563383_PREDICTED	XR_007834.1	XR_007834.1		317533	109511851	XR_007834.1	RGD1563383_predicted		ILMN_1366701	1580465	S	2125	CATTACCCACCTTTAGAGGCCAGACAGCAAATGCATGTTATAAGCCCAGA				Xq22	"PREDICTED: Rattus norvegicus similar to hypothetical protein 4930595M18 (predicted) (RGD1563383_predicted), mRNA."
Hydrolase;Protease -> Serine protease;Defense/immunity protein -> Complement component	Protein metabolism and modification -> Proteolysis;Immunity and defense -> Complement-mediated immunity	Rattus norvegicus	RefSeq	GI_13162352-S	ILMN_291360	CFI	NM_024157.1	NM_024157.1		79126	13162352	NM_024157.1	Cfi	NP_077071.1	ILMN_1357309	2900176	S	1582	GAGATGCAGTGTGCGGGTACCAGTGATGGGTCCATTGATGCCTGCAAAGG	2	+	227325092-227325109	2q43	"Rattus norvegicus complement factor I (Cfi), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"	"The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence IEA]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]"	"Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Combining with acetylated low-density lipoproteins, advanced glycation end products, or other polyanionic ligands to initiate a change in cell activity [goid 5044] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]"
Protease -> Cysteine protease	Protein metabolism and modification -> Proteolysis;Developmental processes -> Gametogenesis	Rattus norvegicus	RefSeq	GI_62641152-S	ILMN_49251	USP47_PREDICTED	XM_218997.4	XM_218997.4		308896	109459235	XM_218997.4	Usp47_predicted	XP_218997.3	ILMN_1350712	4780180	S	5430	CATCGTATGGAATAGTTTCTCGGGGGCCTTGGTGCAGACCTGGTGCCACA	1	+	169919812-169919861	1q33	"PREDICTED: Rattus norvegicus ubiquitin specific protease 47 (predicted) (Usp47_predicted), mRNA."
Select regulatory molecule -> G-protein modulator -> Guanyl-nucleotide exchange factor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Signal transduction -> Cell surface receptor mediated signal transduction -> Receptor protein tyrosine kinase signaling pathway	Rattus norvegicus	RefSeq	GI_62659480-S	ILMN_50037	RGL1_PREDICTED	XM_222717.4	XM_222717.4		289080	109498017	XM_222717.4	Rgl1_predicted	XP_222717.4	ILMN_1370136	2810064	S	2392	AGGACAGCTAAGCGGGGCTGCTGGAGTAACAGACACAGCAAGGTCACCCT	13	-	67469699-67469748	13q21	"PREDICTED: Rattus norvegicus ral guanine nucleotide dissociation stimulator,-like 1 (predicted) (Rgl1_predicted), mRNA."
Signaling molecule -> Membrane-bound signaling molecule	Signal transduction -> Cell communication;Developmental processes -> Ectoderm development -> Neurogenesis	Rattus norvegicus	RefSeq	GI_9507082-S	ILMN_301015	SEMA4F	NM_019272.1	NM_019272.1		29745	9507082	NM_019272.1	Sema4f	NP_062145.1	ILMN_1373899	6450402	S	3820	CCCCTTGGTTTGGAGTTCCCGGTGGCTTTGAGTAGGATCTTTGGCGTGGC	4	-	117104765-117104814	4q34	"Rattus norvegicus sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F (Sema4f), mRNA."	"Integral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; require detergents, such as Triton X-100, to be released from membranes [goid 299] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IDA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]"	"The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IDA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of axon outgrowth [goid 30517] [evidence IDA]; The process by which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues [goid 31290] [evidence IDA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62649471-S	ILMN_278092	LOC298442	NM_001025656.1	NM_001025656.1		298442	71043663	NM_001025656.1	LOC298442	NP_001020827.1	ILMN_1360341	5340044	S	1327	GGGAACTCCAGAACAACTCCCTTTCTAACCTGGAACCCAGCAGCTCTCAG	5	+	137006761-137006763:137007447-137007493	5q36	"Rattus norvegicus similar to RIKEN cDNA 0610037D15 (LOC298442), mRNA."				MGC114580	MGC114580
		Rattus norvegicus	Unigene	Rn.49412	ILMN_160524	RN.49412	Rn.49412		Rn.49412		14960831	BI296422			ILMN_1530174	4230017	S	36	TTCTTATTTTTCTTTCATTAGCAAACATACAAATGGGTAGAGTGAACCCT					"UI-R-CV2-cgr-a-06-0-UI.s1 UI-R-CV2 Rattus norvegicus cDNA clone UI-R-CV2-cgr-a-06-0-UI 3', mRNA"
Transporter -> Amino acid transporter;Transfer/carrier protein -> Mitochondrial carrier protein	Transport -> Small molecule transport	Rattus norvegicus	RefSeq	GI_62664251-S	ILMN_52915	SLC25A2_PREDICTED	XM_226032.3	XM_226032.3		291640	109506503	XM_226032.3	Slc25a2_predicted	XP_226032.1	ILMN_1372163	3710292	S	616	GGATGGTCCCTTAGGCTTCTATCGTGGACTCTCAACCACTCTTGCTCAGG	18	-	30537147-30537196	18p11	"PREDICTED: Rattus norvegicus solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2 (predicted) (Slc25a2_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62641336-S	ILMN_280046	BCL7C_PREDICTED	XM_001078626.1	XM_001078626.1		293514	109462910	XM_001078626.1	Bcl7c_predicted	XP_001078626.1	ILMN_1366449	6760215	S	699	GCAGGAGGTACTGATGAACCCCCAAAGCTGACCAAGGAGGAGCCTGTTCC				1q36	"PREDICTED: Rattus norvegicus B-cell CLL/lymphoma 7C (predicted) (Bcl7c_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62718760-S	ILMN_263390	LOC501467	XM_576877.1	XM_576877.1		501467	62718760	XM_576877.1	LOC501467	XP_576877.1	ILMN_1355945	1990292	S	378	GCTGAAGAAGGATATTAACTTCTATCGGTAAGTACTGGTCAGAAGGGCCC	Un|NW_047968.1	+	44229-44259:44260-44278		"PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC501467), mRNA."
		Rattus norvegicus	RefSeq	GI_62661321-S	ILMN_52393	LOC364300	XM_344326.2	XM_344326.2		364300	62661321	XM_344326.2	LOC364300	XP_344327.2	ILMN_1349023	430706	S	196	GCTACATCGCCAGAGTGAAGCAGCATTATACAGAGCAATGGGCACAGACC					"PREDICTED: Rattus norvegicus similar to proteasome (prosome, macropain) subunit, alpha type 7 (LOC364300), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62646348-S	ILMN_272953	PIGT_PREDICTED	XM_001070371.1	XM_001070371.1		296360	109471284	XM_001070371.1	Pigt_predicted	XP_001070371.1	ILMN_1353356	1850091	S	2061	CAGGTAATGGGGTGCAGTAGAGCTTGTGGTACTGTGGGAGGGGCGCTGAA				3q42	"PREDICTED: Rattus norvegicus phosphatidylinositol glycan, class T (predicted) (Pigt_predicted), mRNA."
Signaling molecule -> Peptide hormone;Transferase	Phosphate metabolism -> Regulation of phosphate metabolism;Signal transduction -> Cell surface receptor mediated signal transduction;Signal transduction -> Cell communication;Homeostasis -> Calcium ion homeostasis;Other metabolism	Rattus norvegicus	RefSeq	GI_51036665-S	ILMN_300390	STC1	NM_031123.2	NM_031123.2		81801	51036665	NM_031123.2	Stc1	NP_112385.1	ILMN_1360404	7050273	S	2171	CCCCTTGGAAGTGGCAGTTCTTGGCTCATTGCCTTCCATCAATGCCTGGC	15	+	49577265-49577314	15p11	"Rattus norvegicus stanniocalcin 1 (Stc1), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]"	"The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence TAS]"	"Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47576272-S	ILMN_281862	OLR1297	NM_001000461.1	NM_001000461.1		300600	47576272	NM_001000461.1	Olr1297	NP_001000461.1	ILMN_1352756	5700398	S	854	TGAATCCTGTGATCTACAGCCTGCGAAATAAAGAAGTCAAAGTTGCCCTG	8	-	41710788-41710837	8q22	"Rattus norvegicus olfactory receptor 1297 (Olr1297), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1297	Olr1297
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62664626-S	ILMN_51481	RGD1310784_PREDICTED	XM_214527.3	XM_214527.3		291441	109506791	XM_214527.3	RGD1310784_predicted	XP_214527.1	ILMN_1361140	3940154	S	1155	GAGGCCAGAGGAGGATCTTGAGAAGTACGGAGAAGAGGGGAGCAGAGGTG	18	-	70988305-70988354	18q12.2	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810433K01 (predicted) (RGD1310784_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_34880865-S	ILMN_58326	RGD1565820_PREDICTED	XM_344165.3	XM_344165.3		364029	109498096	XM_344165.3	RGD1565820_predicted	XP_344166.3	ILMN_2040653	2320204	S	2771	CATCTGCCACTTTTGGGATAGACCCAAGCCCGAGGACTACTGACAGACAG	13	+	76808511-76808560	13q22	"PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1565820_predicted), mRNA."
Cytoskeletal protein -> Microtubule family cytoskeletal protein -> Other microtubule family cytoskeletal protein	Developmental processes -> Ectoderm development -> Neurogenesis;Cell cycle -> Mitosis -> Chromosome segregation	Rattus norvegicus	RefSeq	GI_62649879	ILMN_267175	TMEM57	NM_001025699.2	NM_001025699.2		313618	84619517	NM_001025699.2	Tmem57	NP_001020870.2	ILMN_1650041	2900551	S	1873	AACGCAACACCTAGAGAACAGCCTCAGTGCAGAGACGAGGATCAAGCTGG				5q36	"Rattus norvegicus transmembrane protein 57 (Tmem57), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"			MGC116145; Tmem57	MGC116145; Tmem57
		Rattus norvegicus	RefSeq	GI_62647019-S	ILMN_69500	LOC362337	XM_347041.2	XM_347041.2		362337	62647019	XM_347041.2	LOC362337	XP_347042.1	ILMN_1373722	540195	S	336	TCCCATGCCAGCAAGTGCCGGGTTGCTACAAAGGTGACAGGGCACATTGG					"PREDICTED: Rattus norvegicus hypothetical LOC362337 (LOC362337), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47577922-S	ILMN_268619	OLR1139	NM_001000427.1	NM_001000427.1		300395	47577922	NM_001000427.1	Olr1139	NP_001000427.1	ILMN_1364693	6420452	S	483	GCTCTCCATACTCAGTAGCATGATAGATGCCCTGCTACATAGTCTGTTGG	8	-	17305190-17305239	8q13	"Rattus norvegicus olfactory receptor 1139 (Olr1139), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr8-17305722-17304748_ORF; Olr1139	ratchr8-17305722-17304748_ORF; Olr1139
		Rattus norvegicus	RefSeq	GI_62649977-S	ILMN_57390	EFHD2_PREDICTED	XM_216579.3	XM_216579.3		298609	62649977	XM_216579.3	Efhd2_predicted	XP_216579.3	ILMN_1363733	6770273	S	2328	AGGCGGACAGGATTTATTCTGGATCTAGGCGGCCACAGCAAGTGCCCAGG				5q36	"PREDICTED: Rattus norvegicus EF hand domain containing 2 (predicted) (Efhd2_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62653702-S	ILMN_263163	RGD1562084_PREDICTED	XM_001073058.1	XM_001073058.1		501002	109484738	XM_001073058.1	RGD1562084_predicted	XP_001073058.1	ILMN_1368029	1190195	S	2095	AGCTTCAGCAGGGTAGAGTGTGGGGGCCAGCTCAGCCTCTTTTGTTGCCT				8q24	"PREDICTED: Rattus norvegicus similar to expressed sequence AI118078 (predicted) (RGD1562084_predicted), mRNA."
Transporter -> Cation transporter -> Hydrogen transporter;Oxidoreductase -> Oxidase	Electron transport;Other metabolism	Rattus norvegicus	RefSeq	GI_62650274-S	ILMN_51635	COX7A2L_PREDICTED	XM_216635.4	XM_216635.4		298762	109477872	XM_216635.4	Cox7a2l_predicted	XP_216635.3	ILMN_1367003	7000019	S	148	CCAGAGAAGCACCGCCTATCATATTTGCCACACCGACCAAACTGACCTCC	6	-	6836500-6836549	6q12	"PREDICTED: Rattus norvegicus cytochrome c oxidase subunit VIIa polypeptide 2 like (predicted) (Cox7a2l_predicted), mRNA."
Ion channel -> Voltage-gated ion channel -> Voltage-gated potassium channel	Signal transduction -> Cell communication;Transport -> Ion transport -> Cation transport	Rattus norvegicus	RefSeq	GI_13929045-S	ILMN_286127	KCNH1	NM_031742.1	NM_031742.1		65198	13929045	NM_031742.1	Kcnh1	NP_113930.1	ILMN_1358383	670403	S	4395	GGCTATTTTTGTGGTCAGCCGAGGATGCTGCCAAGAGCTCCCCTGTGTGG				13q27	"Rattus norvegicus potassium voltage-gated channel, subfamily H (eag-related), member 1 (Kcnh1), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins [goid 160] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]"	"Catalysis of the phosphorylation of a specific transcription regulator in response to the presence of a particular signal substance outside the cell [goid 155] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_20302027-S	ILMN_266652	RGD621352	NM_138865.1	NM_138865.1		192229	20302027	NM_138865.1	RGD621352	NP_620220.1	ILMN_1364181	510025	S	1354	GGAAGTCTGCCCACAATGAGCGATAGGTGCTGCTGTTCAGACCTGTTCGT	11	-	70500178-70500227	11q22	"Rattus norvegicus similar to RIKEN cDNA 1500031L02 (RGD621352), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62663068-S	ILMN_262595	CCDC71	NM_001024904.1	NM_001024904.1		498678	67846085	NM_001024904.1	Ccdc71	NP_001020075.1	ILMN_1357267	1570138	S	1315	GTGCTCAGACGATGAGGTTCGACAGTGTGCCCAACAGATCCTCCGTGTGA	16|NW_047483.1	+	249662-249711		"Rattus norvegicus coiled-coil domain containing 71 (Ccdc71), mRNA."
Signaling molecule -> Chemokine	Signal transduction -> Cell surface receptor mediated signal transduction -> Cytokine and chemokine mediated signaling pathway	Rattus norvegicus	RefSeq	GI_62645852-S	ILMN_270475	RGD1566226_PREDICTED	XM_001081139.1	XM_001081139.1		296149	109470808	XM_001081139.1	RGD1566226_predicted	XP_001081139.1	ILMN_1366928	2970133	S	1015	CCTCCGGCAGTGAGAGTGTCCCAGTCTTCAACTGTCTCCAGTTTGGTGAC				3q36	"PREDICTED: Rattus norvegicus similar to hypothetical protein F830045P16 (predicted) (RGD1566226_predicted), mRNA."
Cytoskeletal protein -> Actin family cytoskeletal protein -> Non-motor actin binding protein	Developmental processes -> Embryogenesis	Rattus norvegicus	RefSeq	GI_56605667-S	ILMN_268605	FLII	NM_001008279.1	NM_001008279.1		287375	56605667	NM_001008279.1	Flii	NP_001008280.1	ILMN_1354486	780131	S	3898	CTCACATCCTGCAAGCAGCACACAGCCCAAAGCCCTACCAGTGTGTCCAC	10	-	46860327-46860376	10q22	"Rattus norvegicus flightless I homolog (Drosophila) (Flii), mRNA."	"A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]"	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence ISS]	"Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]"	Flii; MGC94344	Flii; MGC94344
Receptor;Signaling molecule -> Membrane-bound signaling molecule;Transcription factor;Defense/immunity protein	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Immunity and defense;Developmental processes -> Ectoderm development -> Neurogenesis;Cell proliferation and differentiation;Cell structure and motility -> Cell motility	Rattus norvegicus	RefSeq	GI_62651302-S	ILMN_279940	JAG2	XM_001073124.1	XM_001073124.1		29147	109480052	XM_001073124.1	Jag2	XP_001073124.1	ILMN_1352777	3060632	S	4154	ATTTTTGTAAGGTTTCCGTGTCCGCACGCACTGTGGCAGGAGAGCAGGGC				6q32	"PREDICTED: Rattus norvegicus jagged 2 (Jag2), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence IEA]; Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment [goid 1709] [evidence NAS]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence NAS]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The process by which the cellular identity of auditory hair cells is acquired and determined [goid 9912] [evidence ISS]; The process by which the anatomical structures of embryonic epithelia are generated and organized. Morphogenesis pertains to the creation of form [goid 16331] [evidence ISS]; The process by which the anatomical structures of embryonic epithelia are generated and organized. Morphogenesis pertains to the creation of form [goid 16331] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence NAS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence ISS]; Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix [goid 30155] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence NAS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence ISS]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEA]; The process whereby a relatively unspecialized hemopoietic cell acquires specialized features of a gamma-delta T cell [goid 42492] [evidence ISS]; The process whereby a relatively unspecialized hemopoietic cell acquires specialized features of a gamma-delta T cell [goid 42492] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; The process of T cell selection that occurs in the thymus [goid 45061] [evidence ISS]; The process of T cell selection that occurs in the thymus [goid 45061] [evidence ISS]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence TAS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]"	"Interacting selectively with the Notch (N) protein, a surface receptor [goid 5112] [evidence TAS]; Interacting selectively with the Notch (N) protein, a surface receptor [goid 5112] [evidence ISS]; Interacting selectively with the Notch (N) protein, a surface receptor [goid 5112] [evidence NAS]; Interacting selectively with the Notch (N) protein, a surface receptor [goid 5112] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence ISS]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62641685-S	ILMN_272297	RGD1306343_PREDICTED	XM_001067482.1	XM_001067482.1		309146	109463316	XM_001067482.1	RGD1306343_predicted	XP_001067482.1	ILMN_1360006	1740717	S	1156	TTGTAGCTGTGGTGGATGGACAGGCCGCTGTTGCTGTGTCTTTTGTGGCC				1q42	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810036I24 (predicted) (RGD1306343_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62667040-S	ILMN_63334	PDZD11_PREDICTED	XM_217572.4	XM_217572.4		302422	109510903	XM_217572.4	Pdzd11_predicted	XP_217572.1	ILMN_1349933	2900181	S	620	CACCCTCCTGGTTTATGGATGGGGAGGATGGGGAGACAGCTTACCAGCTG	X	-	88621556-88621605	Xq31	"PREDICTED: Rattus norvegicus PDZ domain containing 11 (predicted) (Pdzd11_predicted), mRNA."
Molecular function unclassified	Cell adhesion;Developmental processes -> Mesoderm development -> Muscle development	Rattus norvegicus	RefSeq	GI_62667059-S	ILMN_268858	ITGB1BP2_PREDICTED	XM_001069915.1	XM_001069915.1		317258	109512071	XM_001069915.1	Itgb1bp2_predicted	XP_001069915.1	ILMN_1361212	6620717	S	1172	CAGAGACCAGGATAGGGTTGACTATGTGGTGTCATTGAGCAGCAGGAGGC				Xq31	"PREDICTED: Rattus norvegicus integrin beta 1 binding protein 2 (predicted) (Itgb1bp2_predicted), mRNA."
Transcription factor	Developmental processes -> Mesoderm development -> Muscle development	Rattus norvegicus	RefSeq	GI_62648562-S	ILMN_280561	RB1CC1_PREDICTED	XM_001061446.1	XM_001061446.1		312927	109475983	XM_001061446.1	Rb1cc1_predicted	XP_001061446.1	ILMN_1364648	6200161	S	5838	CCGGTCTCCAGGGAGGAAAAGTCTGTACCGCTGATCTTTTCAAGTGCAGG				5q12	"PREDICTED: Rattus norvegicus RB1-inducible coiled-coil 1 (predicted) (Rb1cc1_predicted), mRNA."
Molecular function unclassified	Developmental processes -> Meiosis	Rattus norvegicus	RefSeq	GI_62667530-S	ILMN_266408	RGD1565442_PREDICTED	XM_001054068.1	XM_001054068.1		293841	109462282	XM_001054068.1	RGD1565442_predicted	XP_001054068.1	ILMN_1362577	4920129	S	404	GGTGTCGCCGAAAAGCTATTGTTGAGGAAGCCAGGAAACAAATGGGCTGC				Xq37	"PREDICTED: Rattus norvegicus similar to X-linked lymphocyte regulated gene 4 (predicted) (RGD1565442_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62661805-S	ILMN_274811	RGD1560797_PREDICTED	XM_001076325.1	XM_001076325.1		306115	109502870	XM_001076325.1	RGD1560797_predicted	XP_001076325.1	ILMN_1363059	7100368	S	981	CAAGATGGTAATGAAGCAGGTGTCCGAGGGCCCACTAAAGGGCATCCTGG				15q21	"PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (predicted) (RGD1560797_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62660548-S	ILMN_56971	LOC498382	XM_579820.1	XM_579820.1		498382	62660548	XM_579820.1	LOC498382	XP_579820.1	ILMN_1372779	3060324	S	119	TGGCAGCTACTCCTCAATATGAAGATCCTTTCCTGGATGGGGGGCGCTGG					"PREDICTED: Rattus norvegicus LOC498382 (LOC498382), mRNA."
		Rattus norvegicus	RefSeq	GI_62654016-S	ILMN_288773	LOC367117	XM_001060455.1	XM_001060455.1		367117	109485040	XM_001060455.1	LOC367117	XP_001060455.1	ILMN_1369524	4570044	S	483	GACCAGTCCTGAACCGATCAAAAACCGGCTCCGAGTGCAAGCACCCTGTC				8q31	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2900055D03 (LOC367117), mRNA."
		Rattus norvegicus	RefSeq	GI_62643274-S	ILMN_62930	LOC497754	XM_579458.1	XM_579458.1		497754	62643274	XM_579458.1	LOC497754	XP_579458.1	ILMN_1374731	5390519	S	6511	CACTGGAAGGGACGCAGCTAAGAAACGCCAGTCCAAACCCGAAAGTGGGG					"PREDICTED: Rattus norvegicus hypothetical gene supported by NM_022548 (LOC497754), mRNA."
Transcription factor -> Homeobox transcription factor;Nucleic acid binding -> Other DNA-binding protein	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Developmental processes -> Ectoderm development -> Neurogenesis	Rattus norvegicus	RefSeq	GI_24429583-S	ILMN_289905	PRRX1	NM_153821.1	NM_153821.1		266813	24429583	NM_153821.1	Prrx1	NP_722543.1	ILMN_1368514	6400528	S	972	CGCAGGGTATCAACATGGCCAACAGCATTGCCAACCTGAGACTGAAGGCC	13	-	78962003-78962052	13q22	"Rattus norvegicus paired related homeobox 1 (Prrx1), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IDA]; The process of activating or increasing the rate or extent of mesenchymal cell proliferation. Mesenchymal cells are loosely organized embryonic cells [goid 2053] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; The process by which the anatomical structures of middle ear are generated and organized. Morphogenesis pertains to the creation of form. The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window) [goid 42474] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of smoothened signaling [goid 45880] [evidence ISS]; The process by which the anatomical structures of cranial skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48701] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48704] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48704] [evidence ISS]; The process by which the anatomical structures of arterial blood vessels are generated and organized. Morphogenesis pertains to the creation of form. Arteries are blood vessels that transport blood from the heart to the body and its organs [goid 48844] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence ISS]; The biological process whose specific outcome is the progression of the palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The palate is the partition that separates the nasal and oral cavities [goid 60021] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]"	"Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]"	Pmx1; Prx-1	Pmx1; Prx-1
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62663345-S	ILMN_294125	MYLIP_PREDICTED	XM_001059193.1	XM_001059193.1		306825	109505607	XM_001059193.1	Mylip_predicted	XP_001059193.1	ILMN_1374414	430494	S	1509	GCAGACCAGAGTGCTGCAGGAGAAGCTGCGCAAACTGAAGGAAGCCATGC				17p12	"PREDICTED: Rattus norvegicus myosin regulatory light chain interacting protein (predicted) (Mylip_predicted), mRNA."
		Rattus norvegicus	Unigene	Rn.2894	ILMN_161178	RN.2894	Rn.2894		Rn.2894		31155355	CD371265			ILMN_1530228	6660152	S	51	AAAGACAATACAAAATCCAAACATTCCTTTTTACAAGTTCAGATACATAT					"UI-R-DY0-crh-d-06-0-UI.s1 UI-R-DY0 Rattus norvegicus cDNA clone UI-R-DY0-crh-d-06-0-UI 3', mRNA"
		Rattus norvegicus	RefSeq	GI_62639341-S	ILMN_50339	KIRREL2_PREDICTED	XM_218486.3	XM_218486.3		292784	62639341	XM_218486.3	Kirrel2_predicted	XP_218486.3	ILMN_1369170	1240411	S	2838	TTGGGGAGTCAGAGCAAGCTGATGACCAATCCCTCCAAAATGGAGCCCTG					"PREDICTED: Rattus norvegicus kin of IRRE like 2 (Drosophila) (predicted) (Kirrel2_predicted), mRNA."
Select regulatory molecule -> Kinase modulator -> Kinase inhibitor;Phosphatase -> Protein phosphatase	Protein metabolism and modification -> Protein modification;Signal transduction -> Intracellular signaling cascade -> MAPKKK cascade	Rattus norvegicus	RefSeq	GI_62644624	ILMN_63282	LOC365977	XM_345312.3	XM_345312.3		365977	109465733	XM_345312.3	LOC365977	XP_345313.3	ILMN_1651033	610136	S	71	GATGATAGTGTGACCACTGGCATCTTCATGAGCTCCAGAGGTCACAGCAC	2|NW_047644.1	-	163988-164011:164012-164037		"PREDICTED: Rattus norvegicus similar to Dual specificity protein phosphatase 14 (Mitogen-activated protein kinase phosphatase 6) (MAP kinase phosphatase 6) (MKP-6) (LOC365977), mRNA."		The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	"Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the reaction: protein serine/threonine/tyrosine phosphate + H2O = protein serine/threonine/tyrosine + phosphate [goid 8138] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]"
Transcription factor -> Other transcription factor;Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Signal transduction -> Intracellular signaling cascade -> JNK cascade;Cell cycle -> Cell cycle control;Cell proliferation and differentiation;Oncogenesis -> Oncogene	Rattus norvegicus	RefSeq	GI_19923684-S	ILMN_51512	JUN	NM_021835.3	NM_021835.3		24516	82523470	NM_021835.3	Jun	NP_068607.1	ILMN_1365705	4050576	S	2804	CTTAAGGCTGGAAGAAGAGGGTGTTGCAAGGGGAGAGGGACAGCCCACTG	5	-	115358406-115358455	5q33	"Rattus norvegicus Jun oncogene (Jun), mRNA."	"The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus [goid 790] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IMP]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]"	"Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IMP]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence IMP]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence TAS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IMP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence IMP]; Any biological process in an organism that recur with a regularity of approximately 24 hours [goid 7623] [evidence IEP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IEP]; Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 9987] [evidence IEA]; Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level [goid 9987] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; Any process that stops, prevents or decreases the rate of the phosphorylation by a protein of one or more of its own residues [goid 31953] [evidence IEA]; Any process that stops, prevents or decreases the rate of the phosphorylation by a protein of one or more of its own residues [goid 31953] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; The process whereby relatively unspecialized cells acquire specialized structural and/or functional features of leading edge cells, cells at the front of a migrating epithelial sheet [goid 35026] [evidence IEA]; The process whereby relatively unspecialized cells acquire specialized structural and/or functional features of leading edge cells, cells at the front of a migrating epithelial sheet [goid 35026] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of monocyte differentiation [goid 45657] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IDA]; A change in the state or activity of a cell (in terms of enzyme production, gene expression, etc.) as a result of deprivation of potassium ions [goid 51365] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence IEA]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence IDA]"	"Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IMP]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IMP]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence TAS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence TAS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence TAS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IC ]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]"
Protease -> Serine protease	Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_62655361-S	ILMN_282996	RGD1563955_PREDICTED	XM_343615.2	XM_343615.2		363274	62655361	XM_343615.2	RGD1563955_predicted	XP_343616.2	ILMN_1359206	4010368	S	1721	CCTGGATAGGTACAGAACAAGAACAGAGGCTGGGAAAGGAGCACCAGGGC	9	+	85993717-85993766	9q35	"PREDICTED: Rattus norvegicus similar to transmembrane serine protease 9 (predicted) (RGD1563955_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Vision	Rattus norvegicus	RefSeq	GI_25742775-S	ILMN_48680	MC4R	NM_013099.2	NM_013099.2		25635	83025110	NM_013099.2	Mc4r	NP_037231.1	ILMN_1363931	3990154	S	1451	CACTCAGGCACAACCTGAGCAGTGTACTTCCCAACAGCTGCCTCTACTGT	18	-	63391309-63391358	18q12.1	"Rattus norvegicus melanocortin 4 receptor (Mc4r), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The process that results in increased metabolic rate in tissues of an organism. It is triggered by the detection of dietary excess. This process is achieved via signalling in the sympathetic nervous system [goid 2024] [evidence IDA];  [goid 6112] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Behavior associated with the intake of food [goid 7631] [evidence ISS]; Behavior associated with the intake of food [goid 7631] [evidence IEA]; Behavior associated with the intake of food [goid 7631] [evidence IDA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism [goid 19222] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism [goid 19222] [evidence IEA]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32868] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone resorption [goid 45780] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of bone resorption [goid 45780] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of bone resorption [goid 45780] [evidence ISS]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with melanocortin to initiate a change in cell activity [goid 4977] [evidence IEA]; Combining with melanocortin to initiate a change in cell activity [goid 4977] [evidence IDA]; Combining with melanocortin to initiate a change in cell activity [goid 4977] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IMP]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IDA]
Select regulatory molecule -> Kinase modulator	Signal transduction -> Intracellular signaling cascade -> Other intracellular signaling cascade;Signal transduction -> Cell communication;Protein targeting and localization -> Protein targeting	Rattus norvegicus	RefSeq	GI_13242319-A	ILMN_293223	AKAP4	NM_024402.1	NM_024402.1		79254	13242319	NM_024402.1	Akap4	NP_077378.1	ILMN_1376800	2970441	S	2210	CTGAGCTAGAAGAGCAAGCAGCCCTAGCAAGCAATGGCCCCAGATGTGGC	X	-	27515063-27515112	Xq13	"Rattus norvegicus A kinase (PRKA) anchor protein 4 (Akap4), mRNA."	"A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence IEA]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence ISS]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence ISS]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence ISS]"	"The series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand [goid 7178] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30030] [evidence IEA]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence ISS]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence ISS]"	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any subunit of protein kinase A [goid 51018] [evidence ISS]
Transcription factor -> Other transcription factor;Nucleic acid binding	Carbohydrate metabolism;Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Signal transduction -> Cell surface receptor mediated signal transduction -> Other receptor mediated signaling pathway;Signal transduction -> Cell communication;Sensory perception -> Vision;Developmental processes -> Embryogenesis;Developmental processes -> Anterior/posterior patterning;Developmental processes -> Segment specification;Developmental processes -> Ectoderm development -> Neurogenesis;Developmental processes -> Mesoderm development;Cell cycle -> Cell cycle control;Cell proliferation and differentiation;Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_62659038-S	ILMN_264640	FOXN4_PREDICTED	XM_001080414.1	XM_001080414.1		288736	109497499	XM_001080414.1	Foxn4_predicted	XP_001080414.1	ILMN_1366227	6450736	S	2163	GCCCTTTCCAGATGTGCAGGTGACAGGTCTCTATGCGGCCTATTCCACTG				12q16	"PREDICTED: Rattus norvegicus forkhead box N4 (predicted) (Foxn4_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62651473-S	ILMN_65773	LOC503060	XM_580258.1	XM_580258.1		503060	62651473	XM_580258.1	LOC503060	XP_580258.1	ILMN_1363164	1240059	S	21	GAAGGGCAGTGTGCCAAGGGCAACAGCTGGCACATAAGTAATTTCAGCCC				6q32	"PREDICTED: Rattus norvegicus LOC503060 (LOC503060), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62647794-S	ILMN_279272	CCDC37_PREDICTED	XM_001076288.1	XM_001076288.1		297444	109473925	XM_001076288.1	Ccdc37_predicted	XP_001076288.1	ILMN_1349421	1990524	S	1749	TCGTGAAGAGAAGGCCAGGATGCAGAAGCAGTTGCAGGAGGAACGTCTGC				4q34	"PREDICTED: Rattus norvegicus coiled-coil domain containing 37 (predicted) (Ccdc37_predicted), mRNA."
Signaling molecule -> Growth factor	Signal transduction -> Cell surface receptor mediated signal transduction -> Receptor protein tyrosine kinase signaling pathway;Signal transduction -> Intracellular signaling cascade -> MAPKKK cascade;Signal transduction -> Cell communication -> Ligand-mediated signaling;Developmental processes -> Ectoderm development -> Neurogenesis;Cell cycle -> Cell cycle control;Cell proliferation and differentiation;Oncogenesis -> Oncogene	Rattus norvegicus	RefSeq	GI_11559989-S	ILMN_280035	FGF5	NM_022211.1	NM_022211.1		60662	11559989	NM_022211.1	Fgf5	NP_071547.1	ILMN_1367620	4850100	S	609	GGTCAAACCCCAGCACGTCTCCACCCACTTCCTACCCAGGTTCAAGCAGT	14	-	12714113-12714162	14p22	"Rattus norvegicus fibroblast growth factor 5 (Fgf5), mRNA."	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	"The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IDA]; The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands [goid 8543] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence IEA]"	Interacting selectively with the nerve growth factor receptor [goid 5163] [evidence TAS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IDA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]
Transcription factor -> Transcription cofactor;Protease -> Aspartic protease	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_62641120-S	ILMN_47806	NRIP3_PREDICTED	XM_341903.3	XM_341903.3		361625	109459225	XM_341903.3	Nrip3_predicted	XP_341904.3	ILMN_1355487	5570286	S	862	GCACGTGCACTCACACCAGGTTGACAGATGAGACAACTGGGTTCGAACCA	1	-	167383317-167383366	1q33	"PREDICTED: Rattus norvegicus nuclear receptor interacting protein 3 (predicted) (Nrip3_predicted), mRNA."
Signaling molecule	Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_14091753-S	ILMN_290160	GRIP1	NM_032069.1	NM_032069.1		84016	14091753	NM_032069.1	Grip1	NP_114458.1	ILMN_1362595	3520132	S	4127	GCAACAGTGCACGTTGGAGACCATAATAGGTGGTGGTAAATGTTTCGCCC				7q22	"Rattus norvegicus glutamate receptor interacting protein 1 (Grip1), mRNA."	"Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [pmid 1041498] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]"	"The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IMP]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 11178875] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 9768844] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 11178875] [evidence IPI]
Hydrolase -> Esterase	Immunity and defense -> Detoxification	Rattus norvegicus	RefSeq	GI_19424283-S	ILMN_284765	CES2	NM_133586.1	NM_133586.1		171118	19424283	NM_133586.1	Ces2	NP_598270.1	ILMN_1357047	1190368	S	1712	TGTCTGGTGAAAGGAACAGAGTGTGGGAGTGAGGGCAGGTGGGATCATTC	1	+	267894801-267894850	1q55	"Rattus norvegicus carboxylesterase 2 (intestine, liver) (Ces2), mRNA."			"Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]"	rCES2; CES RL4	rCES2; CES RL4
Cytoskeletal protein -> Actin family cytoskeletal protein -> Non-motor actin binding protein	Sensory perception -> Hearing;Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_9665228-S	ILMN_301010	ESPN	NM_019622.1	NM_019622.1		56227	9665228	NM_019622.1	Espn	NP_062568.1	ILMN_1359944	6100044	S	2431	AGAACAGTCGGAGAAGCTGCGGACACTAGGATACGACGAGGCCAAGCTCG	5	-	169350021-169350070	5q36	"Rattus norvegicus espin (Espn), mRNA."	"The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence TAS]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [pmid 16413524] [evidence IDA]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [pmid 16413524] [evidence IDA]; Dense covering of microvilli on the apical surface of epithelial cells in the intestine and kidney; the microvilli aid absorption by increasing the surface area of the cell [goid 5903] [pmid 9763424] [evidence IDA]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [pmid 16413524] [evidence IDA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A two-stranded helical polymer of the protein actin [goid 31941] [pmid 8799813] [evidence IDA]"	The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; Assembly of actin filament bundles in which the filaments are tightly packed (approximately 10-20 nm apart) and oriented with the same polarity [goid 30046] [evidence ISS]; The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness [goid 51017] [evidence NAS]; The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness [goid 51017] [evidence ISS]	"Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IPI]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [pmid 12598619] [evidence IPI]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [pmid 8799813] [evidence IDA]"	Je	Je
Cytoskeletal protein -> Other cytoskeletal proteins;Cytoskeletal protein -> Actin family cytoskeletal protein -> Non-motor actin binding protein	Signal transduction -> Cell surface receptor mediated signal transduction -> Other receptor mediated signaling pathway;Signal transduction -> Intracellular signaling cascade -> Other intracellular signaling cascade;Neuronal activities -> Synaptic transmission -> Neuromuscular synaptic transmission	Rattus norvegicus	RefSeq	GI_62650560-S	ILMN_65854	SNTG2_PREDICTED	XM_234043.4	XM_234043.4		298936	109478103	XM_234043.4	Sntg2_predicted	XP_234043.3	ILMN_1360869	940022	S	1667	CCCTAGACCCTGCATTCATGGACAGCCAGAGCGTGGCAAGAAGATACATG	6	-	48059916-48059965	6q16	"PREDICTED: Rattus norvegicus syntrophin, gamma 2 (predicted) (Sntg2_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62658550-S	ILMN_275263	LOC501810	XR_008976.1	XR_008976.1		501810	109496690	XR_008976.1	LOC501810		ILMN_1368120	2120156	S	449	CTAGTGCACCTCCCGAGACTGAGACAAGAAGATGGAAGTCTAGCCAGGGC				12q11	"PREDICTED: Rattus norvegicus similar to Leukosialin precursor (Leucocyte sialoglycoprotein) (Sialophorin) (Ly-48) (B cell differentiation antigen LP-3) (CD43 antigen) (LOC501810), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62079122-S	ILMN_296988	RGD1308470	NM_001014198.1	NM_001014198.1		362778	62079122	NM_001014198.1	RGD1308470	NP_001014220.1	ILMN_1352680	5340086	S	1217	CCCCGGAAACCGTATCTTGGCCTGTGTTGGTTCTTACTCCGAACGTTTGT	6	+	129857741-129857790	6q32	"Rattus norvegicus similar to RIKEN cDNA 4933433P14 gene (RGD1308470), mRNA."	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]	The regulated release of arachidonic acid from a cell or group of cells [goid 50482] [evidence IEA]	Interacting selectively with any protease or peptidase [goid 2020] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a type 1 angiotensin receptor [goid 31702] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]
Transcription factor -> Zinc finger transcription factor -> KRAB box transcription factor	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62643604-S	ILMN_290343	EVI1_PREDICTED	XM_001065376.1	XM_001065376.1		294924	109466487	XM_001065376.1	Evi1_predicted	XP_001065376.1	ILMN_1355579	60168	S	531	GGGCCATACATGGGAGAGCAGAGATCAGACCTGAAAGATTCCAGCTATGG				2q24	"PREDICTED: Rattus norvegicus ecotropic viral integration site 1 (predicted) (Evi1_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62718832-S	ILMN_65059	LOC503418	XM_580269.1	XM_580269.1		503418	62718832	XM_580269.1	LOC503418	XP_580269.1	ILMN_1367139	6590438	S	34	GCTTGCTGATGGAATGTGGAGATGGAGGCCTTGCTGATAACCGACTGGCC					"PREDICTED: Rattus norvegicus LOC503418 (LOC503418), mRNA."
Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> DNA metabolism	Rattus norvegicus	RefSeq	GI_62650077-S	ILMN_269405	THAP3_PREDICTED	XM_001075997.1	XM_001075997.1		362667	109477744	XM_001075997.1	Thap3_predicted	XP_001075997.1	ILMN_1361991	1660551	S	860	CCAACAGTCAGGTCTCCTGGGCTGAGGCTTTCAGCTGTGGGGCAACAACA				5q36	"PREDICTED: Rattus norvegicus THAP domain containing, apoptosis associated protein 3 (predicted) (Thap3_predicted), mRNA."
Transcription factor -> Other transcription factor;Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Signal transduction -> Intracellular signaling cascade -> JAK-STAT cascade;Immunity and defense -> Stress response;Apoptosis -> Inhibition of apoptosis;Oncogenesis -> Other oncogenesis;Cell structure and motility -> Cell motility	Rattus norvegicus	RefSeq	GI_56799388-S	ILMN_290635	STAT3	NM_012747.2	NM_012747.2		25125	56799388	NM_012747.2	Stat3	NP_036879.1	ILMN_1373442	1660315	S	4109	TGAGGGCTTCTCTGGGGCAGGTGTTGTACCTCAGGGGTTCTGGGAAGTCT	10	-	89821349-89821398	10q32.1	"Rattus norvegicus signal transducer and activator of transcription 3 (Stat3), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]"	"A homeostatic process by which an organism modulates its internal body temperature [goid 1659] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a photoreceptor cell, as found in the eye, the primary visual organ of most organisms [goid 1754] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence ISS]; Process involving non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals [goid 6953] [evidence IEP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IDA]; Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size [goid 40014] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]"	"Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence ISS]"	MGC93551	MGC93551
Transcription factor -> Other transcription factor;Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Immunity and defense -> Interferon-mediated immunity;Oncogenesis	Rattus norvegicus	RefSeq	GI_62663484-S	ILMN_57707	IRF4_PREDICTED	XM_225283.4	XM_225283.4		291100	109504790	XM_225283.4	Irf4_predicted	XP_225283.4	ILMN_1354706	7100129	S	1080	CACGCAGCAGTTTCTATCAGAGCTACAAGTGTTTGCTCACCACGGCCGGC	17	-	40176081-40176111:40180640-40180658	17p12	"PREDICTED: Rattus norvegicus interferon regulatory factor 4 (predicted) (Irf4_predicted), mRNA."
Select regulatory molecule -> G-protein modulator -> Guanyl-nucleotide exchange factor	Signal transduction -> Intracellular signaling cascade -> Other intracellular signaling cascade;Intracellular protein traffic -> Endocytosis -> Phagocytosis;Cell structure and motility -> Cell motility	Rattus norvegicus	RefSeq	GI_62661664-S	ILMN_54843	DOCK5_PREDICTED	XM_224311.4	XM_224311.4		305987	109501834	XM_224311.4	Dock5_predicted	XP_224311.4	ILMN_1356411	5290017	S	5622	GGAGAGATGCCAAAGCCCCACCTCCACCCCCTCCAAAGGCTCGAAAATCA	15	-	47314991-47315040	15p12	"PREDICTED: Rattus norvegicus dedicator of cytokinesis 5 (predicted) (Dock5_predicted), mRNA."
Transfer/carrier protein -> Other transfer/carrier protein	Intracellular protein traffic	Rattus norvegicus	RefSeq	GI_62648812-S	ILMN_264626	CHMP5	NM_001025410.1	NM_001025410.1		297995	70912367	NM_001025410.1	Chmp5	NP_001020581.1	ILMN_1356094	510195	S	1186	CTGTCACTACTGCATCATGAGTTACTACTTTGATCCCATGGTTCCCTCGG	5	+	58359608-58359657	5q22	"Rattus norvegicus chromatin modifying protein 5 (Chmp5), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"Any process that modulates the frequency, rate, or extent of receptor recyling [goid 1919] [evidence ISS]; Any process that modulates the frequency, rate, or extent of receptor recyling [goid 1919] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases [goid 7040] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases [goid 7040] [evidence IEA]; The directed movement of substances from endosomes to lysosomes [goid 8333] [evidence ISS]; The directed movement of substances from endosomes to lysosomes [goid 8333] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RGD1305968	RGD1305968
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62078698-S	ILMN_296263	SCCPDH	NM_001013985.1	NM_001013985.1		305021	62078698	NM_001013985.1	Sccpdh	NP_001014007.1	ILMN_1349324	2680402	S	1252	GGCTGCCGTGACTTTCCTGAATGATGCCTCTGACCTTCCAAAAGGGGGCG	13	+	95370551-95370595:95371278-95371282	13q26	"Rattus norvegicus saccharopine dehydrogenase (putative) (Sccpdh), mRNA."		The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	"The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: 6-(L-1,3-dicarboxypropyl)-L-lysine + NAD+ + H2O = L-glutamate + 2-aminoadipate 6-semialdehyde + NADH + H+ [goid 47131] [evidence IEA]"	RGD1311440	RGD1311440
Nucleic acid binding -> Helicase -> RNA helicase	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription	Rattus norvegicus	RefSeq	GI_62657242-S	ILMN_51557	HELZ_PREDICTED	XM_237808.4	XM_237808.4		287773	109489219	XM_237808.4	Helz_predicted	XP_237808.3	ILMN_1361338	6650440	S	5963	CAAGTGACCCGGCTCGCGCTCTCCTCAGAGAATGTGCAGTTCCTGTTCAG	10	+	97090798-97090804:97090805-97090847	10q32.1	"PREDICTED: Rattus norvegicus helicase with zinc finger domain (predicted) (Helz_predicted), mRNA."
Nucleic acid binding -> Double-stranded DNA binding protein	Cell cycle -> Mitosis	Rattus norvegicus	RefSeq	GI_62648540-S	ILMN_278962	RGD1307055_PREDICTED	XM_001060285.1	XM_001060285.1		362472	109475965	XM_001060285.1	RGD1307055_predicted	XP_001060285.1	ILMN_1375146	4050026	S	2549	AACGGTTCATGGCAGAGCAGCTGAATGAGGGACAGCAGCAGGTTCCTGGG				5q11	"PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ22490 (predicted) (RGD1307055_predicted), mRNA."
Ion channel -> Anion channel	Transport -> Ion transport -> Anion transport	Rattus norvegicus	RefSeq	GI_11559969-S	ILMN_52585	CLCN4-2	NM_022198.2	NM_022198.2		60586	76563947	NM_022198.2	Clcn4-2	NP_071534.2	ILMN_1373419	2680725	S	2297	GAGCTGCCTGCCAACAGCCCACATCCACTGAAGCTGAGGCGCATTCTGAA	X	+	44409566-44409615	Xq21	"Rattus norvegicus chloride channel 4-2 (Clcn4-2), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence ISS]"	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of a chloride ion by a voltage-gated channel [goid 5247] [evidence IEA]	MGC105433	MGC105433
Select regulatory molecule -> Other enzyme regulator	Protein metabolism and modification -> Protein folding	Rattus norvegicus	RefSeq	GI_21245111-S	ILMN_278662	HSPBP1	NM_139261.1	NM_139261.1		246146	21245111	NM_139261.1	Hspbp1	NP_640354.1	ILMN_1363343	1230546	S	1168	AGCCCTACGGATGACAGCATGGATCGGTGAGACCAGGCGGCTTCTTGCAT	1	+	67905494-67905523:67905524-67905543	1q12	"Rattus norvegicus hsp70-interacting protein (Hspbp1), mRNA."			"The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]"
Hydrolase	Carbohydrate metabolism -> Other polysaccharide metabolism;Protein metabolism and modification -> Protein modification -> Protein glycosylation	Rattus norvegicus	RefSeq	GI_51948435-S	ILMN_276876	EDEM2	NM_001004230.1	NM_001004230.1		296304	51948435	NM_001004230.1	Edem2	NP_001004230.1	ILMN_1349891	3520072	S	1518	GCACTGTTGCCGGAGGCTGAAGGAAGAGCAGTGGGAAGTGGAGGACTTGA	3	-	146215548-146215597	3q42	"Rattus norvegicus ER degradation enhancer, mannosidase alpha-like 2 (Edem2), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"		"Catalysis of the hydrolysis of the terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2) [goid 4571] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]"	Edem2; MGC93956	Edem2; MGC93956
		Rattus norvegicus	RefSeq	GI_62650026-S	ILMN_266303	RGD1563533_PREDICTED	XR_009017.1	XR_009017.1		313713	109477706	XR_009017.1	RGD1563533_predicted		ILMN_1365938	1780541	S	3234	CTGGACGGAGCCATTAAACATGCGAATTTCCACTTCCGGACGGAGGGAGG				5q36	"PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1563533_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62654864-S	ILMN_56038	LOC503242	XM_578773.1	XM_578773.1		503242	62654864	XM_578773.1	LOC503242	XP_578773.1	ILMN_1364928	5910546	S	1538	CAGTTGGACAAGCCGGATAGGAGAGAACAGCGACTTCGGGCGGACTGGTT					"PREDICTED: Rattus norvegicus similar to cytochrome c oxidase subunit VIc (LOC503242), mRNA."
Nucleic acid binding -> Chromatin/chromatin-binding protein;Hydrolase -> Deacetylase	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Nucleoside, nucleotide and nucleic acid metabolism -> Chromatin packaging and remodeling	Rattus norvegicus	RefSeq	GI_62657485-S	ILMN_67774	SIRT7_PREDICTED	XM_221204.4	XM_221204.4		303745	109489504	XM_221204.4	Sirt7_predicted	XP_221204.4	ILMN_1365479	2120082	S	1152	GGAGGCTGGTTCGGCAGGGGCTGTGCTAAGCGTGCAAAAAGGAAGAAAGC	10	-	110010163-110010212	10q32.3	"PREDICTED: Rattus norvegicus sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae) (predicted) (Sirt7_predicted), mRNA."
Transporter -> Other transporter	Transport -> Ion transport -> Cation transport	Rattus norvegicus	RefSeq	GI_53850583-S	ILMN_301652	SLC16A13	NM_001005530.1	NM_001005530.1		287451	53850583	NM_001005530.1	Slc16a13	NP_001005530.1	ILMN_1375183	6370164	S	1658	GCCTTAGGATTCTTGATCCATCTCCTCCAGAGCAGGCCCAGGGTTCCTCC	10	-	57056587-57056636	10q24	"Rattus norvegicus solute carrier family 16, member 13 (monocarboxylic acid transporter 13) (Slc16a13), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]"	"Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]"
Lyase -> Dehydratase	Other metabolism -> Other carbon metabolism	Rattus norvegicus	RefSeq	GI_62644614	ILMN_301575	LOC679649	XM_001053861.1	XM_001053861.1		679649	109465727	XM_001053861.1	LOC679649	XP_001053861.1	ILMN_1650516	6200408	S	1245	CATGGGTGATACTAGAAGCTATCCCAGAGAACAGGGAGGAAGGCCCATGG	2|NW_047635.1	+	882943-882984:883841-883848		"PREDICTED: Rattus norvegicus similar to betaine-homocysteine methyltransferase 2 (LOC679649), mRNA."		The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence IEA]	Catalysis of the reaction: H2CO3 = CO2 + H2O [goid 4089] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + L-homocysteine = S-adenosyl-L-homocysteine + L-methionine [goid 8898] [evidence IEA]
		Rattus norvegicus	RefSeq	GI_27669531	ILMN_66230	LOC299390	XM_234629.1	XM_234629.1		299390	27669531	XM_234629.1	LOC299390	XP_234629.1	ILMN_1650691	5890059	S	351	CCCAGTGAAGGAAGTCCAGTGTGACCATGCACAAAAACTTCCCTACAGCG					"PREDICTED: Rattus norvegicus similar to Ig heavy chain V region PJ14 precursor (LOC299390), mRNA."
Nucleic acid binding -> mRNA processing factor -> mRNA splicing factor	Nucleoside, nucleotide and nucleic acid metabolism -> Pre-mRNA processing -> mRNA splicing	Rattus norvegicus	RefSeq	GI_62645950-S	ILMN_281346	SNRPB2_PREDICTED	XM_001053334.1	XM_001053334.1		362223	109470906	XM_001053334.1	Snrpb2_predicted	XP_001053334.1	ILMN_1372965	2370487	S	486	CTCAAGGAAATGCAGCACCAAATCCTCAGGTCCCTGATTACCCTCCAAAC				3q41	"PREDICTED: Rattus norvegicus U2 small nuclear ribonucleoprotein B (predicted) (Snrpb2_predicted), mRNA."
Select regulatory molecule -> G-protein -> Small GTPase	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Cell structure and motility	Rattus norvegicus	RefSeq	GI_58219517-S	ILMN_277975	RND2	NM_001010953.1	NM_001010953.1		303553	58219517	NM_001010953.1	Rnd2	NP_001010953.1	ILMN_1356527	6100154	S	1018	GGGTAGGCATCGGAGGCATGAACTTGGATAGGGCAGGTAGGTGTTCGGAA	10	+	90496719-90496768	10q32.1	"Rattus norvegicus Rho family GTPase 2 (Rnd2), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IPI]"	Rohn; RhoN; Arhn	Rohn; RhoN; Arhn
		Rattus norvegicus	RefSeq	GI_62642470	ILMN_65835	LOC502391	XM_577870.1	XM_577870.1		502391	62642470	XM_577870.1	LOC502391	XP_577870.1	ILMN_1650479	2030577	S	1	ATGAGATTCTTAGGCACCTACAGTGCAACATCTGTCAACACCTCCAGTGC					"PREDICTED: Rattus norvegicus similar to gastric mucin (LOC502391), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62642700-S	ILMN_56929	RGD1309660_PREDICTED	XM_226652.4	XM_226652.4		309953	109464205	XM_226652.4	RGD1309660_predicted	XP_226652.4	ILMN_1368630	1340427	S	1967	GCTTCTCCTAGGACTCCAGTAACTGACTGCTTTCCGTGGTGTTGTGGTAC	2	-	13467158-13467207	2q11	"PREDICTED: Rattus norvegicus similar to hypothetical protein MGC33214 (predicted) (RGD1309660_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_55925594-S	ILMN_264839	OS9	NM_001007265.1	NM_001007265.1		362891	55925594	NM_001007265.1	Os9	NP_001007266.1	ILMN_1352258	6980670	S	2313	ACCCAGAGACTTGATGAGACCTTGTGCGTGGGAGTGGCAGGAACAGCAGG	7	-	67047056-67047105	7q22	"Rattus norvegicus amplified in osteosarcoma (Os9), mRNA."			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94750	MGC94750
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception	Rattus norvegicus	RefSeq	GI_13928909-S	ILMN_56627	GPRK6	NM_031657.1	NM_031657.1		59076	13928909	NM_031657.1	Gprk6	NP_113845.1	ILMN_1359434	6180114	S	2276	TCTCAGTGTTTGTCAGAGCTGGAGACGGGGGCTTTGTGTTCTCCGGGCCT				17p14	"Rattus norvegicus G protein-coupled receptor kinase 6 (Gprk6), mRNA."				GRK6	GRK6
Molecular function unclassified	Protein metabolism and modification -> Protein modification	Rattus norvegicus	RefSeq	GI_62652388	ILMN_274601	RNF19_PREDICTED	XM_001059414.1	XM_001059414.1		362900	109482122	XM_001059414.1	Rnf19_predicted	XP_001059414.1	ILMN_1649779	3850452	S	187	ATCCCGCGGAGGCAAAACGCGGAGGAAGAACGGAGGACGGCTCTTCAGCA				7q22	"PREDICTED: Rattus norvegicus ring finger protein (C3HC4 type) 19 (predicted) (Rnf19_predicted), mRNA."
Molecular function unclassified	Protein metabolism and modification -> Protein modification	Rattus norvegicus	RefSeq	GI_62652322-S	ILMN_274601	RNF19_PREDICTED	XM_001059414.1	XM_001059414.1		362900	109482122	XM_001059414.1	Rnf19_predicted	XP_001059414.1	ILMN_1367545	840037	S	4073	ACAAGGAAAATGTCCGGGCTGCAGTCTTGTACCGCCGTTCTCGCTGCGTC				7q22	"PREDICTED: Rattus norvegicus ring finger protein (C3HC4 type) 19 (predicted) (Rnf19_predicted), mRNA."
Hydrolase -> Lipase -> Phospholipase;Select calcium binding protein	Lipid, fatty acid and steroid metabolism -> Phospholipid metabolism;Lipid, fatty acid and steroid metabolism -> Lipid metabolism;Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Developmental processes -> Fertilization	Rattus norvegicus	RefSeq	GI_58866039-S	ILMN_279546	PLCZ1	NM_001012234.1	NM_001012234.1		497197	58866039	NM_001012234.1	Plcz1	NP_001012234.1	ILMN_1363563	5390066	S	1638	AGAAGTCTACGGTGTCCCAAACGACCACATGAAGCAGCAGAGTCGTGCCG	4	-	177099441-177099490	4q44	"Rattus norvegicus phospholipase C, zeta 1 (Plcz1), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby the egg becomes metabolically active, initiates protein and DNA synthesis and undergoes structural changes to its cortex and/or cytoplasm [goid 7343] [evidence ISS]; The process whereby the egg becomes metabolically active, initiates protein and DNA synthesis and undergoes structural changes to its cortex and/or cytoplasm [goid 7343] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]"	"Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = D-myo-inositol 1,4,5-trisphosphate + diacylglycerol [goid 4435] [evidence IEA]; Catalysis of the reaction: a phospholipid + H2O = 1,2-diacylglycerol + a phosphatidate [goid 4629] [evidence ISS]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]"
		Rattus norvegicus	RefSeq	GI_62666629-S	ILMN_64051	LOC363453	XM_343775.2	XM_343775.2		363453	62666629	XM_343775.2	LOC363453	XP_343776.2	ILMN_1369594	1770170	S	1629	TTGGGCGTTCTGGCTGGGCTAGTCATGGTCCCTGTGGCTTTGAACAGTGG				Xq13	"PREDICTED: Rattus norvegicus similar to DXImx48e protein (LOC363453), mRNA."
Extracellular matrix -> Extracellular matrix glycoprotein	Cell adhesion	Rattus norvegicus	RefSeq	GI_62646268-S	ILMN_269388	EMILIN3_PREDICTED	XM_001069605.1	XM_001069605.1		362262	109471241	XM_001069605.1	Emilin3_predicted	XP_001069605.1	ILMN_1368647	4920739	S	2165	TGCCGGGACACAGCCCAGGAACTCCAGCATACAGTGAGCCACTTTGACCA				3q42	"PREDICTED: Rattus norvegicus elastin microfibril interfacer 3 (predicted) (Emilin3_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62665068-S	ILMN_275940	RGD1562546_PREDICTED	XM_001067081.1	XM_001067081.1		364953	109508507	XM_001067081.1	RGD1562546_predicted	XP_001067081.1	ILMN_1372546	3520136	S	742	GAGGTGACTGCGGATGCGTCCTTAGGTGTAGAGGTGACTGTGGATGCGTC				19p11	"PREDICTED: Rattus norvegicus similar to trophinin isoform 1 (predicted) (RGD1562546_predicted), mRNA."
Membrane traffic protein -> Membrane traffic regulatory protein	Intracellular protein traffic -> General vesicle transport;Cell structure and motility -> Cell motility	Rattus norvegicus	RefSeq	GI_13928869	ILMN_68103	VAPA	NM_031631.2	NM_031631.2		58857	61889096	NM_031631.2	Vapa	NP_113819.3	ILMN_1650890	670170	S	868	GGATCCACCTCAGCCGTGTCCTTCAGAGATAATGTCACCAGTCCTCTTCC	9	-	104339726-104339775	9q37	"Rattus norvegicus vesicle-associated membrane protein, associated protein a (Vapa), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence ISS]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence ISS]; A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]"	"Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]"	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62645939-S	ILMN_266285	RGD1309829_PREDICTED	XM_001080214.1	XM_001080214.1		296190	109470764	XM_001080214.1	RGD1309829_predicted	XP_001080214.1	ILMN_1351068	1500450	S	963	TACCATGACTCTCAGGCAAGGCCAGCTGAAAGAGGTTCAGCAACCGTGTC				3q41	"PREDICTED: Rattus norvegicus similar to dJ842G6.1.1 (novel protein) (predicted) (RGD1309829_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62667513	ILMN_66645	RGD1564407_PREDICTED	XM_223440.4	XM_223440.4		305373	109511368	XM_223440.4	RGD1564407_predicted	XP_223440.4	ILMN_1650536	3440687	S	2281	TTAGTTGTGGAGGCGGGGGGAGGGGTCAGCTGGCATGAGAAGTGTTTGGA	X	+	157032823-157032872	Xq37	"PREDICTED: Rattus norvegicus similar to high mobility group protein homolog HMG4 (predicted) (RGD1564407_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62649609-S	ILMN_265212	INPP5B	XM_001056372.1	XM_001056372.1		362590	109477202	XM_001056372.1	Inpp5b	XP_001056372.1	ILMN_1374985	2350273	S	3411	GCCTCCAGGACATGCAGTCAGTGAGTTCCCCATATTCTGTACTGAGCATC				5q36	"PREDICTED: Rattus norvegicus inositol polyphosphate-5-phosphatase B (Inpp5b), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]"	"Catalysis of the removal of a phosphate group from phosphorylated myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4437] [evidence IEA]"
Cell adhesion molecule -> CAM family adhesion molecule	Signal transduction -> Cell communication -> Cell adhesion-mediated signaling;Cell adhesion	Rattus norvegicus	RefSeq	GI_6981699-S	ILMN_266055	VCAM1	NM_012889.1	NM_012889.1		25361	6981699	NM_012889.1	Vcam1	NP_037021.1	ILMN_1364472	1190170	S	2561	GTCATTGCGAGGTCGTTTAGAGTAGTAGCACTCCAGATGTAGGTCAGAAC	2	-	212278048-212278097	2q41	"Rattus norvegicus vascular cell adhesion molecule 1 (Vcam1), mRNA."	"That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells [goid 5902] [evidence ISS]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone; usually approximately 0.1 um wide, 5-10 um long, can be up to 50 um long in axon growth cones; contains a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward [goid 30175] [evidence ISS]; The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue [goid 45177] [evidence ISS]"	"The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence TAS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IMP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell [goid 7157] [evidence ISS]; The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell [goid 7157] [evidence ISS]; The attachment of a leukocyte to another cell via adhesion molecules [goid 7159] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IEA]; The initial attachment of a membrane to a target membrane, mediated by proteins protruding from the two membranes. Docking requires only that the membranes come close enough for the proteins to interact and adhere [goid 22614] [evidence ISS]; Any process that activates or increases the rate or extent of T cell proliferation [goid 42102] [evidence ISS]; Any process by which an organism has an effect on an organism of a different species [goid 44419] [evidence IEA]; Transient adhesive interactions between leukocytes and endothelial cells lining blood vessels mediated primarily by selectins and which are typically the first step in cellular extravasation [goid 50901] [evidence ISS]"	Interacting selectively with an integrin [goid 5178] [evidence IMP]; Interacting selectively with an integrin [goid 5178] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC108734; VCAM1B	MGC108734; VCAM1B
Receptor;Transporter	Carbohydrate metabolism -> Carbohydrate transport;Transport -> Carbohydrate transport	Rattus norvegicus	RefSeq	GI_62664187-S	ILMN_69286	REEP5_PREDICTED	XM_344661.3	XM_344661.3		364838	109506426	XM_344661.3	Reep5_predicted	XP_344662.2	ILMN_1352309	2190632	S	1124	GCCAAGGAAGGTTGCAGACACCACCTGTGACCTGTGAAGCAAGATCCCCC	18	-	26815611-26815660	18p12	"PREDICTED: Rattus norvegicus receptor accessory protein 5 (predicted) (Reep5_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_54262185-S	ILMN_301940	TNFRSF12A	NM_181086.2	NM_181086.2		302965	54262185	NM_181086.2	Tnfrsf12a	NP_851600.1	ILMN_1373609	7040112	S	752	CCACCCACTCGGATGGACTGAAATGCCACTACCCTGAGTTTTAGCCCTGG	10	-	12940499-12940548	10q12	"Rattus norvegicus tumor necrosis factor receptor superfamily, member 12a (Tnfrsf12a), mRNA."	"Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IEA]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The formation of adhesions that stabilize protrusions at the leading edge of a migrating cell; involves integrin activation, clustering, and the recruitment of structural and signaling components to nascent adhesions [goid 6931] [evidence IEA]; The formation of adhesions that stabilize protrusions at the leading edge of a migrating cell; involves integrin activation, clustering, and the recruitment of structural and signaling components to nascent adhesions [goid 6931] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IEA]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of axon extension [goid 45773] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of axon extension [goid 45773] [evidence ISS]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC72653; Fn14	MGC72653; Fn14
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_16758035-S	ILMN_262986	RPL21	NM_053330.1	NM_053330.1		79449	16758035	NM_053330.1	Rpl21	NP_445782.1	ILMN_1349782	6510193	S	421	CTTAACGGCCAGCCTGCGCCACCCAGAGAAGCCCACTTTGTGAGGACTAA	12	-	8716758-8716796:8716936-8716946	12p11	"Rattus norvegicus ribosomal protein L21 (Rpl21), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]"	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]
		Rattus norvegicus	RefSeq	GI_62663249-S	ILMN_48656	LOC502112	XM_577553.1	XM_577553.1		502112	62663249	XM_577553.1	LOC502112	XP_577553.1	ILMN_1363165	4200725	S	121	GTCCGGTTCGTATCCAGAAAACTGTCCAGATGGTTCCCAGAGGACGGTGT				17p14	"PREDICTED: Rattus norvegicus similar to cathepsin Q2 (LOC502112), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62641871-S	ILMN_289690	RGD1560328_PREDICTED	XM_001074464.1	XM_001074464.1		499317	109463525	XM_001074464.1	RGD1560328_predicted	XP_001074464.1	ILMN_2039023	5700382	S	192	TGCCTGGTTCTTCGTTTACGAGGTCACCTCTACCAAGTACACGCGCGATG				1q43	"PREDICTED: Rattus norvegicus similar to UPF0197 protein C11orf10 homolog (predicted) (RGD1560328_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62653868-S	ILMN_51452	LOC367109	XM_345951.2	XM_345951.2		367109	62653868	XM_345951.2	LOC367109	XP_345952.2	ILMN_1364959	6650168	S	369	AGCCGTCCCGAGACCGGTAGGCCTCAGCCCAAAGGTTGAGAGGGTAAGAA				8q24	"PREDICTED: Rattus norvegicus hypothetical LOC367109 (LOC367109), mRNA."
		Rattus norvegicus	RefSeq	GI_62649931-S	ILMN_297022	KLHDC7A_PREDICTED	XR_008781.1	XR_008781.1		298590	109477587	XR_008781.1	Klhdc7a_predicted		ILMN_1370354	6760139	S	2194	CTCTGGTATGAGTGTGCCACGTACCGCTTGCCTTACCCCGATGCCTTCCA				5q36	"PREDICTED: Rattus norvegicus kelch domain containing 7A (predicted) (Klhdc7a_predicted), mRNA."
Transcription factor -> Transcription cofactor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription	Rattus norvegicus	RefSeq	GI_62643991-S	ILMN_269177	TDPOZ1_PREDICTED	XM_001073003.1	XM_001073003.1		365854	109514269	XM_001073003.1	Tdpoz1_predicted	XP_001073003.1	ILMN_1354097	2320368	S	489	GCCTGGAGAGAACATGACACCTGCAATCAAGGATTCAAGGCACATACTAA				2q34	"PREDICTED: Rattus norvegicus TD and POZ domain containing 1 (predicted) (Tdpoz1_predicted), mRNA."
Receptor -> Other receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> Other receptor mediated signaling pathway;Signal transduction -> Intracellular signaling cascade -> NF-kappaB cascade;Signal transduction -> Intracellular signaling cascade -> JNK cascade;Signal transduction -> Intracellular signaling cascade -> Other intracellular signaling cascade;Apoptosis -> Induction of apoptosis;Developmental processes -> Ectoderm development -> Neurogenesis	Rattus norvegicus	RefSeq	GI_21245115-S	ILMN_277752	NRADD	NM_139259.1	NM_139259.1		246143	21245115	NM_139259.1	Nradd	NP_640352.1	ILMN_1363688	1240136	S	796	AGGATGCTCTGACTGCCATAGGCCGAGAAGATGTGGTCCAGGTTTTGAGC	8	-	115002344-115002393	8q32	"Rattus norvegicus neurotrophin receptor associated death domain (Nradd), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The region between the two lipid bilayers of the nuclear envelope; 20-40 nm wide [goid 5641] [evidence IEA]; The region between the two lipid bilayers of the nuclear envelope; 20-40 nm wide [goid 5641] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The region between the two lipid bilayers of the nuclear envelope; 20-40 nm wide [goid 5641] [evidence IEA]; A thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments [goid 30027] [evidence IEA]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]"	Interacting selectively with the neurotrophin p75 receptor [goid 5166] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	PLAIDD	PLAIDD
Lyase -> Dehydratase;Isomerase -> Epimerase/racemase	Lipid, fatty acid and steroid metabolism -> Steroid metabolism -> Cholesterol metabolism	Rattus norvegicus	RefSeq	GI_6981049-S	ILMN_288990	HSD3B5	NM_012584.1	NM_012584.1		24470	6981049	NM_012584.1	Hsd3b5	NP_036716.1	ILMN_1366884	5340102	S	1541	GGGCTTGAGCTCCCACACTAGAGTCAGGAGGCAAAACCATGCTGAAGTTC	2	-	193250323-193250372	2q34	"Rattus norvegicus hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 5 (Hsd3b5), mRNA."	"A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope [goid 31966] [evidence IEA]"	"The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence TAS]; The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence IDA]; The chemical reactions and pathways resulting in the formation of C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones [goid 6700] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]"	"Catalysis of the reaction: 3-beta-hydroxy-delta(5)-steroid + NAD+ = 3-oxo-delta(5)-steroid + NADH + H+ [goid 3854] [evidence IEA]; Catalysis of the reaction: 3-beta-hydroxy-delta(5)-steroid + NAD+ = 3-oxo-delta(5)-steroid + NADH + H+ [goid 3854] [evidence IDA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction in which one substrate is a sterol derivative [goid 16229] [evidence TAS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]"	Hsd1; RATHSDI	Hsd1; RATHSDI
		Rattus norvegicus	RefSeq	GI_62638468	ILMN_50966	LOC499009	XM_574302.1	XM_574302.1		499009	62638468	XM_574302.1	LOC499009	XP_574302.1	ILMN_1651151	5670438	S	364	GCTGCTGGCAAAGGGAACATCCCAACTAAGAGACGGCCTGTCCTCCGAAC				1p11	"PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (LOC499009), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62655777-A	ILMN_268500	METRN	NM_001009962.1	NM_001009962.1		287151	58000408	NM_001009962.1	Metrn	NP_001009962.1	ILMN_1376785	5360280	S	864	ATGTGAGGTGGCACTGGACTGAGAGACCTGGGAGCAAGCCCTGGATGGAT	10	-	15062092-15062120:15062121-15062141	10q12	"Rattus norvegicus meteorin, glial cell differentiation regulator (Metrn), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]"	"The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of axonogenesis [goid 50772] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of axonogenesis [goid 50772] [evidence IEA]"		Hyrac; RGD1306222	Hyrac; RGD1306222
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Signal transduction -> Intracellular signaling cascade -> Other intracellular signaling cascade;Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_24475744-S	ILMN_53263	CDC42BPB	NM_053620.2	NM_053620.2		113960	24475744	NM_053620.2	Cdc42bpb	NP_446072.1	ILMN_1370386	2370435	S	5056	AGCCTGACTCTGACTCCACGAAGCACTCACTCCGTCCAACAGCTCCAACC				6q32	"Rattus norvegicus Cdc42-binding protein kinase beta (Cdc42bpb), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence ISS]; The area of a motile cell closest to the direction of movement [goid 31252] [evidence ISS]"	"The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IMP]; Dynamic structural changes to the assembly and arrangement of the actin cytoskeleton, comprising actin filaments and their associated proteins [goid 31532] [evidence ISS]; Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence ISS]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Modulates the rate of GTP hydrolysis by a small monomeric GTPase [goid 5083] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with Rho protein, any member of the Rho subfamily of the Ras superfamily of monomeric GTPases. Proteins in the Rho subfamily are involved in relaying signals from cell-surface receptors to the actin cytoskeleton [goid 17048] [evidence IDA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]"
Isomerase	Other metabolism	Rattus norvegicus	RefSeq	GI_34876554-S	ILMN_51191	RGD1561620_PREDICTED	XM_225507.3	XM_225507.3		291274	109505163	XM_225507.3	RGD1561620_predicted	XP_225507.3	ILMN_1355812	3140019	S	71	CTGGAGAGTGTGACGGGATGCGGCTGGGTATGTTCCAGGCAAGCAAAACC	17	-	72354363-72354386:72355771-72355796	17q12.1	"PREDICTED: Rattus norvegicus similar to isopentenyl diphosphate delta-isomerase type 2 (predicted) (RGD1561620_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62659516-S	ILMN_51751	LOC364020	XM_344157.2	XM_344157.2		364020	62659516	XM_344157.2	LOC364020	XP_344158.2	ILMN_1352260	7050053	S	1975	CAGTCAGACATTTAGCAACACTTCCGATTCCACAGCGGCCTGGCAGACTC					"PREDICTED: Rattus norvegicus similar to S100 calcium binding protein A11 (calizzarin) (LOC364020), mRNA."
		Rattus norvegicus	RefSeq	GI_62666408-S	ILMN_51025	LOC501503	XM_576904.1	XM_576904.1		501503	62666408	XM_576904.1	LOC501503	XP_576904.1	ILMN_1362324	7000524	S	275	CCCTGGGCAGCACCCCACGAGCGAACTTGAGCCTCGGGATCACAGAAATA					"PREDICTED: Rattus norvegicus similar to putative RNA binding protein 1 (LOC501503), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62663271-S	ILMN_51853	RGD1561671_PREDICTED	XM_341496.3	XM_341496.3		361214	109504679	XM_341496.3	RGD1561671_predicted	XP_341497.2	ILMN_1354777	6660079	S	20	TGTGGCAGGAAGGCCACCCCAGTAGAAGCAAGGTAAAAAAGGTGGAGTCC	17	-	17636343-17636392	17p14	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2900010M23 (predicted) (RGD1561671_predicted), mRNA."
Kinase -> Protein kinase;Transferase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Phosphate metabolism;Other metabolism	Rattus norvegicus	RefSeq	GI_24475715-S	ILMN_282870	MAP2K1	NM_031643.3	NM_031643.3		170851	24475715	NM_031643.3	Map2k1	NP_113831.1	ILMN_1361975	5050685	S	1761	GAGCCCATCACTGCCATGATAGCTGGGGCTTCAGTCTGTCTACTGTGGTG	8	-	68379360-68379409	8q24	"Rattus norvegicus mitogen activated protein kinase kinase 1 (Map2k1), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence EXP]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IDA]; All of the contents of a dendrite, excluding the surrounding plasma membrane [goid 32839] [evidence IDA]; A cell projection part that is part of an axon [goid 33267] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]"	"Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways [goid 165] [evidence IMP]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IDA]; Any process that increases the frequency, rate or extent of vascular smooth muscle contraction [goid 3056] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IDA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IDA]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence TAS]; A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state [goid 7265] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IDA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IMP]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a keratinocyte [goid 30216] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IMP]; Any process that activates or increases the activity of a GTPase of the Ras superfamily [goid 32320] [evidence IMP]; The directed movement of melanosomes into, out of, within or between cells [goid 32402] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of RNA elongation, the extension of an RNA molecule after transcription initiation by the addition of ribonucleotides, catalyzed by RNA polymerase II [goid 32968] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate, or extent of homotypic cell-cell adhesion [goid 34111] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of MAP kinase activity [goid 43406] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell differentiation [goid 45597] [evidence ISS]; The directed movement of a vesicle along a microtubule, mediated by motor proteins [goid 47496] [evidence IDA]; The partitioning of Golgi apparatus between daughter cells at cell division [goid 48313] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an axon injury stimulus [goid 48678] [evidence IMP]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence IMP]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IDA]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence IDA]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence IDA]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence TAS]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence ISS]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence IDA]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence IEA]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence IMP]; Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase [goid 4708] [evidence IDA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA];  [goid 4728] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any member of the Ras superfamily of monomeric GTPases [goid 17016] [evidence IPI]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]; Interacting selectively with a mitogen-activated protein kinase kinase kinase, any protein that can phosphorylate a MAP kinase kinase [goid 31435] [evidence IPI]; Interacting selectively with a mitogen-activated protein kinase kinase kinase, any protein that can phosphorylate a MAP kinase kinase [goid 31435] [evidence IDA]"	Mek1	Mek1
Receptor -> Other receptor	Signal transduction -> Cell communication -> Cell adhesion-mediated signaling;Cell adhesion;Intracellular protein traffic -> Endocytosis -> Receptor mediated endocytosis;Immunity and defense -> Macrophage-mediated immunity;Immunity and defense -> Blood clotting	Rattus norvegicus	RefSeq	GI_62647953-A	ILMN_279639	CLEC4D	NM_001003707.1	NM_001003707.1		362432	51172597	NM_001003707.1	Clec4d	NP_001003707.1	ILMN_1376946	3710458	S	208	CCACACAAGGCTAACATGCATCCTAGAGGAGCCACAGCCTGGAGCTACAG	4	+	159888066-159888115	4q42	"Rattus norvegicus C-type lectin domain family 4, member d (Clec4d), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	"Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]"	Mcl; Clecsf8	Mcl; Clecsf8
Select regulatory molecule -> G-protein modulator;Transferase -> Acyltransferase	Signal transduction -> Intracellular signaling cascade;Signal transduction -> Cell communication -> Ligand-mediated signaling;Intracellular protein traffic -> General vesicle transport;Transport;Neuronal activities -> Synaptic transmission -> Neurotransmitter release	Rattus norvegicus	RefSeq	GI_40254780-S	ILMN_269240	GDI2	NM_017276.2	NM_017276.2		29662	40254780	NM_017276.2	Gdi2	NP_058972.2	ILMN_1361811	6510546	S	2037	AGCACCTTTTATCCCAGGTATGGCTTCTTCAACGGACCAAGCTGCAATGC	17	-	77843578-77843627	17q12.3	"Rattus norvegicus GDP dissociation inhibitor 2 (Gdi2), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"	"Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence TAS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEP]; Any process that modulates the rate of GTP hydrolysis by a GTPase [goid 43087] [evidence IEA]"	"Prevents the dissociation of GDP from the small GTPase Rab, thereby preventing GTP from binding [goid 5093] [evidence IDA]; Prevents the dissociation of GDP from the small GTPase Rab, thereby preventing GTP from binding [goid 5093] [evidence IEA]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Increases the rate of GTP hydrolysis by a GTPase of the Rab family [goid 5097] [evidence ISS]; Interacting selectively with a small monomeric GTPase [goid 31267] [evidence IDA]"	Gdi3	Gdi3
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62650381-S	ILMN_272974	RGD1304963_PREDICTED	XM_001067282.1	XM_001067282.1		313891	109479031	XM_001067282.1	RGD1304963_predicted	XP_001067282.1	ILMN_1356728	6220601	S	4073	GTAGCCAGGACAGATCCCAGCCAGAGTCACAGCCCCAGCACAAGGAAGTT				6q13	"PREDICTED: Rattus norvegicus similar to hypothetical protein MGC38716 (predicted) (RGD1304963_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_58866015-A	ILMN_297161	FBXO7	NM_001012222.1	NM_001012222.1		366854	58866015	NM_001012222.1	Fbxo7	NP_001012222.1	ILMN_1376597	1410671	S	1681	TGCCCAAAGAGGGGTTAGGTGACTGCTGGTCTCTCCACTCTGGATTCCCC	7	-	19947560-19947609	7q13	"Rattus norvegicus F-box protein 7 (Fbxo7), mRNA."		"The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; Any process that affects the structure and integrity of a protein by altering the likelihood of its degradation or aggregation [goid 31647] [evidence IEA]; Any process that affects the structure and integrity of a protein by altering the likelihood of its degradation or aggregation [goid 31647] [evidence ISS]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]
Nucleic acid binding -> mRNA processing factor -> mRNA splicing factor	Nucleoside, nucleotide and nucleic acid metabolism -> Pre-mRNA processing -> mRNA splicing	Rattus norvegicus	RefSeq	GI_62663494-S	ILMN_58338	OACT1_PREDICTED	XM_240636.4	XM_240636.4		306912	109504871	XM_240636.4	Oact1_predicted	XP_240636.4	ILMN_1365218	1580528	S	1387	CCCTGGATTGATCCCACCAACAACCGAACGTTTTGGCCTAGTTACTGCAG	17	-	40858487-40858536	17p12	"PREDICTED: Rattus norvegicus O-acyltransferase (membrane bound) domain containing 1 (predicted) (Oact1_predicted), mRNA."
Nucleic acid binding -> Other RNA-binding protein	Nucleoside, nucleotide and nucleic acid metabolism -> Pre-mRNA processing -> mRNA splicing	Rattus norvegicus	RefSeq	GI_8567351-S	ILMN_301587	CUGBP2	NM_017197.1	NM_017197.1		29428	8567351	NM_017197.1	Cugbp2	NP_058893.1	ILMN_1354742	2810286	S	2071	GCAATTCTAACTCTGAAACCACGGGTGCCCCGAGAGCACTGCCTGGAGAA	17	+	83025247-83025296	17q12.3	"Rattus norvegicus CUG triplet repeat, RNA binding protein 2 (Cugbp2), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	Selection of a splice site by components of the assembling spliceosome [goid 6376] [evidence ISS]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]	"Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IDA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]"	Etr3	Etr3
	Intracellular protein traffic -> Endocytosis -> Phagocytosis;Muscle contraction;Developmental processes -> Mesoderm development -> Muscle development;Cell structure and motility -> Cell structure;Cell structure and motility -> Cell motility	Rattus norvegicus	RefSeq	GI_62649851-S	ILMN_50798	MYOM3_PREDICTED	XM_233562.4	XM_233562.4		313625	109475664	XM_233562.4	Myom3_predicted	XP_233562.4	ILMN_1370222	6380215	S	4091	TCATCGAGAAGAATCGGGCTAAAGTGGTGAGGGGCTTGCCAGACGTGGCC	5	+	154588098-154588109:154589603-154589640	5q36	"PREDICTED: Rattus norvegicus myomesin family, member 3 (predicted) (Myom3_predicted), mRNA."
Select regulatory molecule -> G-protein -> Small GTPase	Intracellular protein traffic -> General vesicle transport	Rattus norvegicus	RefSeq	GI_9506402-S	ILMN_265093	ARL4A	NM_019186.1	NM_019186.1		29308	9506402	NM_019186.1	Arl4a	NP_062059.1	ILMN_1351318	4060044	S	773	TGAAGAGTGTCTACAGCCTGGTTTGCCTGTCTGCCCTCACGGATGCTATT	6	-	59212811-59212860	6q21	"Rattus norvegicus ADP-ribosylation factor-like 4A (Arl4a), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]"	MGC108709; Arl4	MGC108709; Arl4
Nucleic acid binding -> Nuclease	Nucleoside, nucleotide and nucleic acid metabolism -> DNA metabolism -> DNA degradation;Apoptosis -> Apoptotic processes	Rattus norvegicus	RefSeq	GI_16758089-S	ILMN_263712	DFFB	NM_053362.1	NM_053362.1		84359	16758089	NM_053362.1	Dffb	NP_445814.1	ILMN_1367945	2510435	S	920	AGTGCACATCGCCTGCCACAAGAAGACCACACACAAGCTGCAGTGCGACC	5	-	170751072-170751121	5q36	"Rattus norvegicus DNA fragmentation factor, beta polypeptide (caspase-activated DNase) (Dffb), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence IDA]; The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence ISS]; The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; The compaction of chromatin during apoptosis [goid 30263] [evidence ISS]; The compaction of chromatin during apoptosis [goid 30263] [evidence IEA]"	"Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: nicotinate D-ribonucleotide + diphosphate = nicotinate + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4516] [evidence ISS]; Catalysis of the reaction: nicotinate D-ribonucleotide + diphosphate = nicotinate + 5-phospho-alpha-D-ribose 1-diphosphate [goid 4516] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within nucleic acids [goid 4518] [evidence IEA]; Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid [goid 4536] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]; Interacting selectively with any enzyme [goid 19899] [evidence IEA]"	Cad	Cad
Transcription factor -> Other transcription factor;Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Developmental processes	Rattus norvegicus	RefSeq	GI_62645627-S	ILMN_68029	RGD1561597_PREDICTED	XM_575215.2	XM_575215.2		499874	109468590	XM_575215.2	RGD1561597_predicted	XP_575215.2	ILMN_1353859	5910288	S	9118	ACAGGAAGTGACCAGGAAGGCCGGGGGAGCAAGATGATGCCTACATTGGC	3	+	106474600-106474649	3q35	"PREDICTED: Rattus norvegicus similar to mKIAA0518 protein (predicted) (RGD1561597_predicted), mRNA."
Transporter	Lipid, fatty acid and steroid metabolism -> Fatty acid metabolism;Lipid, fatty acid and steroid metabolism -> Lipid and fatty acid transport;Transport -> Lipid and fatty acid transport;Other metabolism	Rattus norvegicus	RefSeq	GI_13162325-S	ILMN_286859	SLC27A5	NM_024143.1	NM_024143.1		79111	13162325	NM_024143.1	Slc27a5	NP_077057.1	ILMN_1350483	5420044	S	2072	GTCTGATGCCAGATGTGTACCAGGCTGTGTGTGAAGGAACCTGGAAGCTC	1	+	72935035-72935084	1q21	"Rattus norvegicus solute carrier family 27 (fatty acid transporter), member 5 (Slc27a5), mRNA."	"The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving bile acids, any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 8206] [evidence IMP]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; long-chain fatty acids have chain lengths of C12-18 [goid 4467] [evidence ISS]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of the reactions: (1) ATP + cholate + CoA = AMP + diphosphate + choloyl-CoA and (2) ATP + (25R)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oate + CoA = AMP + diphosphate + (25R)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA [goid 47747] [evidence IDA]; Catalysis of the reactions: (1) ATP + cholate + CoA = AMP + diphosphate + choloyl-CoA and (2) ATP + (25R)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oate + CoA = AMP + diphosphate + (25R)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA [goid 47747] [evidence IEA]"	rBAL-1; BAL	rBAL-1; BAL
		Rattus norvegicus	RefSeq	GI_62662796-S	ILMN_47858	LOC498645	XM_573927.1	XM_573927.1		498645	62662796	XM_573927.1	LOC498645	XP_573927.1	ILMN_1365532	2470609	S	1194	CACCCAGGAGGAGTAGAGGGCAGGAAATAATCAAACTCAGAGCGGAAATC					"PREDICTED: Rattus norvegicus similar to LRRGT00191 (LOC498645), mRNA."
Cytoskeletal protein	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62641158-S	ILMN_263094	LOC687334	XM_001078036.1	XM_001078036.1		687334	109462709	XM_001078036.1	LOC687334	XP_001078036.1	ILMN_1357646	2760332	S	1930	AAAGACCATGACCCTTCCGTGTCTTCCCTGGAACAGTTGTCCGAATTGGG					"PREDICTED: Rattus norvegicus similar to cytoskeleton associated protein 2 (LOC687334), mRNA."
Nucleic acid binding -> Other nucleic acid binding	Developmental processes -> Meiosis	Rattus norvegicus	RefSeq	GI_62665301	ILMN_289563	TERF2IP	NM_001013143.1	NM_001013143.1		307861	61557081	NM_001013143.1	Terf2ip	NP_001013161.1	ILMN_1650919	1170301	S	891	CCCACACCTGAGGAAGATTCAGAAACACAGCCAGACGAGGAGGAAGAGGA	19	+	41953660-41953709	19q12	"Rattus norvegicus telomeric repeat binding factor 2, interacting protein (Terf2ip), mRNA."	"The terminal region of a linear chromosome in the nucleus that includes the telomeric DNA repeats and associated proteins [goid 784] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]"	"Any process that stops, prevents or reduces the frequency, rate or extent of a process that affects and monitors the activity of telomeric proteins and the length of telomeric DNA [goid 32205] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of a process that affects and monitors the activity of telomeric proteins and the length of telomeric DNA [goid 32205] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]"	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with single-stranded telomere-associated DNA [goid 43047] [evidence ISS]; Interacting selectively with single-stranded telomere-associated DNA [goid 43047] [evidence ISS]	MGC105533	MGC105533
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62657910-S	ILMN_288554	UPK1B	NM_001024253.1	NM_001024253.1		303924	66730399	NM_001024253.1	Upk1b	NP_001019424.1	ILMN_1360729	70735	S	776	TCTGCTGGACCTTCTGGGTTCTCCTGGGCACCATGTTCTACTGGAGCAGA	11	+	63763761-63763771:63766372-63766410	11q21	"Rattus norvegicus uroplakin 1B (Upk1b), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_58865567-A	ILMN_281190	TMEM24	NM_001011996.1	NM_001011996.1		300666	58865567	NM_001011996.1	Tmem24	NP_001011996.1	ILMN_1376427	3610070	S	2993	TCAGAAGACATTGGCAGATCATAGGAAGCCGGCCTAGTGCCCGGGATGGG	8	-	47289050-47289099	8q22	"Rattus norvegicus transmembrane protein 24 (Tmem24), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"
		Rattus norvegicus	RefSeq	GI_62648525-S	ILMN_50985	LACTB2_PREDICTED	XM_216316.3	XM_216316.3		297768	62648525	XM_216316.3	Lactb2_predicted	XP_216316.1	ILMN_1372153	6100433	S	1375	AGAGACTGTCTTCTACAGGAAGCCAAAAGGAAGCTCTCCCCACGTGGTGG				5q11	"PREDICTED: Rattus norvegicus lactamase, beta 2 (predicted) (Lactb2_predicted), mRNA."
		Rattus norvegicus	Unigene	Rn.8410	ILMN_161162	RN.8410	Rn.8410		Rn.8410		51610554	CV104092			ILMN_1530357	1050056	S	481	ACTTTAAATTCCACCTTTGTGTGGTATGCCCAGAGATAAAAGAATGATAA					"AGENCOURT_31539595 NIH_MGC_270 Rattus norvegicus cDNA clone IMAGE:7445094 5', mRNA"
Phosphatase -> Protein phosphatase;Select calcium binding protein	Carbohydrate metabolism -> Other polysaccharide metabolism;Carbohydrate metabolism -> Glycogen metabolism;Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription;Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Protein metabolism and modification -> Translational regulation;Signal transduction -> Intracellular signaling cascade -> Other intracellular signaling cascade;Immunity and defense -> Stress response;Developmental processes -> Meiosis;Cell cycle -> Cell cycle control;Cell cycle -> Mitosis;Homeostasis	Rattus norvegicus	RefSeq	GI_62666840-S	ILMN_275248	PPEF1	NM_001034935.1	NM_001034935.1		317498	77917563	NM_001034935.1	Ppef1	NP_001030107.1	ILMN_1360777	5390014	S	1691	CGCATCTGGTAAGCACTGACTCCAGCGGAAGCGTCGACTACATGTCCAGC	X	+	55434063-55434112	Xq21	"Rattus norvegicus protein phosphatase, EF-hand calcium binding domain 1 (Ppef1), mRNA."		The series of events involved in sensory perception in which a sensory stimulus is received by a cell and converted into a molecular signal [goid 50906] [evidence IEA]	"Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity [goid 4721] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]"	MGC125115	MGC125115
Nucleic acid binding -> Helicase	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62667439	ILMN_62811	RGD1559464_PREDICTED	XM_579037.2	XM_579037.2		503480	109511248	XM_579037.2	RGD1559464_predicted	XP_579037.2	ILMN_1650150	3870692	S	378	GGACGTGTCTTTCCCATTATACCTCTTTTCTGGCGGTAGGACTTATAGCT	X	+	140904723-140904772	Xq36	"PREDICTED: Rattus norvegicus similar to chromosome X open reading frame 48 (predicted) (RGD1559464_predicted), mRNA."
Protease -> Serine protease	Protein metabolism and modification -> Proteolysis;Immunity and defense -> Granulocyte-mediated immunity;Apoptosis	Rattus norvegicus	RefSeq	GI_62661524	ILMN_268365	RGD1563645_PREDICTED	XM_001059252.1	XM_001059252.1		498520	109502473	XM_001059252.1	RGD1563645_predicted	XP_001059252.1	ILMN_1650263	2100093	S	491	GGCACAATGCCCATGTGAAGCCAGAGGATGGGTGCTACATGGCTGGTTGG					"PREDICTED: Rattus norvegicus similar to granzyme C (predicted) (RGD1563645_predicted), mRNA."
Kinase -> Carbohydrate kinase	Carbohydrate metabolism -> Glycolysis	Rattus norvegicus	RefSeq	GI_62821821-S	ILMN_48657	PFKL	NM_013190.4	NM_013190.4		25741	77416374	NM_013190.4	Pfkl	NP_037322.1	ILMN_1369062	6350091	S	2463	CTAGCCACAGATCCCAGCACTAAGGGGAACTCACATGGAACTCGGAGCCT	20	+	11032232-11032281	20p12	"Rattus norvegicus phosphofructokinase, liver (Pfkl), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A protein complex that possesses 6-phosphofructokinase activity; homodimeric and allosteric homotetrameric forms are known [goid 5945] [evidence ISS]; A protein complex that possesses 6-phosphofructokinase activity; homodimeric and allosteric homotetrameric forms are known [goid 5945] [evidence ISS]"	"The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IDA]; The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism [goid 6002] [evidence IDA]; The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism [goid 6002] [evidence IDA]; The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism [goid 6002] [evidence ISS]; The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism [goid 6002] [evidence ISS]; The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism [goid 6002] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of insulin [goid 46676] [evidence ISS]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence IDA]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence TAS]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence IDA]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence ISS]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence ISS]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence IDA]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence ISS]; Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate [goid 3872] [evidence IDA]; Catalysis of the reaction: D-fructose 2,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 4331] [evidence TAS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides [goid 48029] [evidence IDA]; Interacting selectively with any monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides [goid 48029] [evidence IDA]; Interacting selectively with any monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides [goid 48029] [evidence IDA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62652979-S	ILMN_49123	PDZRN4_PREDICTED	XM_235598.4	XM_235598.4		315250	109481203	XM_235598.4	Pdzrn4_predicted	XP_235598.4	ILMN_1360417	4610438	S	1	ATGGGCTTCGCTTTGGAGCGTTTCACGGAAGCCGTGGACCCCGCTTTCCA	7	+	130909407-130909456	7q35	"PREDICTED: Rattus norvegicus PDZ domain containing RING finger 4 (predicted) (Pdzrn4_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62652945-S	ILMN_49123	PDZRN4_PREDICTED	XM_235598.4	XM_235598.4		315250	109481203	XM_235598.4	Pdzrn4_predicted	XP_235598.4	ILMN_1354276	2120497	S	3572	GTGTGGGTGGACAATCTTCCCGTGATATGTAGTGACACTGGTCATGTAGC	7	+	131265077-131265126	7q35	"PREDICTED: Rattus norvegicus PDZ domain containing RING finger 4 (predicted) (Pdzrn4_predicted), mRNA."
Transcription factor -> Homeobox transcription factor;Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Developmental processes -> Ectoderm development -> Neurogenesis	Rattus norvegicus	RefSeq	GI_34880688-S	ILMN_161852	LOC367829	XM_346315.1	XM_346315.1			34880688	XM_346315.1	LOC367829		ILMN_2040351	4290356	S	81	TCCAGTGGCAACTGATGAGGTTTCCACGTGGTTCGCCAACGCGGGCCGGC					"Rattus norvegicus similar to iroquois-class homeobox protein Irx6 (LOC367829), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_16758515-S	ILMN_276062	CCL28	NM_053700.1	NM_053700.1		114492	16758515	NM_053700.1	Ccl28	NP_446152.1	ILMN_1364159	5340181	S	1095	TTGAAGGCTTGCTTGTTCTTCATCCTGTGGTGCTCCTGGGAAGCAGTGGG	2	+	51712682-51712731	2q16	"Rattus norvegicus chemokine (C-C motif) ligand 28 (Ccl28), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]"	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence ISS]	The function of a family of chemotactic pro-inflammatory activation-inducible cytokines acting primarily upon hemopoietic cells in immunoregulatory processes; all chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation [goid 8009] [evidence IEA]	Scya28	Scya28
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576896-S	ILMN_275553	OLR807	NM_001000851.1	NM_001000851.1		405141	47576896	NM_001000851.1	Olr807	NP_001000851.1	ILMN_1367391	1170546	S	713	ACACTTGTGCCTCTCATCTTACTATGGTTGTCCTATGCTACGGCATGGCC	4	+	70641159-70641208	4q23	"Rattus norvegicus olfactory receptor 807 (Olr807), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr807	Olr807
Cell adhesion molecule -> CAM family adhesion molecule	Cell adhesion;Developmental processes -> Ectoderm development -> Neurogenesis	Rattus norvegicus	RefSeq	GI_16758709-S	ILMN_274466	OPCML	NM_053848.1	NM_053848.1		116597	16758709	NM_053848.1	Opcml	NP_446300.1	ILMN_1349652	6200129	S	1858	GCCTAAAAAATGTCCCATGACACGCACCCTGAAGGTACAACTTGGCCCAC	8	+	28508582-28508631	8q13	"Rattus norvegicus opioid binding protein/cell adhesion molecule-like (Opcml), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane [goid 31225] [evidence IEA]"	"The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]
Extracellular matrix -> Other extracellular matrix	Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_62645674-S	ILMN_70194	RGD1562232_PREDICTED	XM_575221.2	XM_575221.2		499878	109468720	XM_575221.2	RGD1562232_predicted	XP_575221.1	ILMN_1371835	2190022	S	987	GGCGTGGAAAGTCCGAGAGCTCAAAAGAATCAAGCGGGACAGAGAGGACC	3	-	108274873-108274922	3q35	"PREDICTED: Rattus norvegicus similar to microfibrillar-associated protein 1 (predicted) (RGD1562232_predicted), mRNA."
Protease -> Serine protease	Protein metabolism and modification -> Proteolysis;Developmental processes -> Ectoderm development -> Neurogenesis;Cell cycle -> Cell cycle control;Cell proliferation and differentiation	Rattus norvegicus	RefSeq	GI_62639620-S	ILMN_268421	KLK11_PREDICTED	XM_001080415.1	XM_001080415.1		292849	109461834	XM_001080415.1	Klk11_predicted	XP_001080415.1	ILMN_1369834	50458	S	903	CCTCAGCTGGGACCCTTGCATGTATCTCTCCGACCTACCACGAATATGAT				1q22	"PREDICTED: Rattus norvegicus kallikrein 11 (predicted) (Klk11_predicted), mRNA."
Transcription factor;Nucleic acid binding -> Chromatin/chromatin-binding protein	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Developmental processes	Rattus norvegicus	RefSeq	GI_62663875-S	ILMN_51667	SFMBT2_PREDICTED	XM_225556.3	XM_225556.3		307106	62663875	XM_225556.3	Sfmbt2_predicted	XP_225556.3	ILMN_1362995	2100750	S	3422	TGGAGACACAGAGGATATTAAGGCTATGCAGTTCCCCCCTAACCCCGGAG				17q12.3	"PREDICTED: Rattus norvegicus Scm-like with four mbt domains 2 (predicted) (Sfmbt2_predicted), mRNA."
Phosphatase -> Nucleotide phosphatase	Nucleoside, nucleotide and nucleic acid metabolism -> Regulation of nucleoside, nucleotide metabolism	Rattus norvegicus	RefSeq	GI_62645880-S	ILMN_272634	ITPA_MAPPED	XM_001081181.1	XM_001081181.1		311422	109470833	XM_001081181.1	Itpa_mapped	XP_001081181.1	ILMN_1361247	2850722	S	737	GAGGAGCGGCTGGCTCTACACCAGAGAACTCAGGGCCAGGTGACACTAAA				3q36	"PREDICTED: Rattus norvegicus inosine triphosphatase (nucleoside triphosphate pyrophosphatase) (mapped) (Itpa_mapped), mRNA."
Nucleic acid binding -> Nuclease;Oxidoreductase	Electron transport;Other metabolism	Rattus norvegicus	RefSeq	GI_62661744-S	ILMN_58958	LOC306038	XM_224366.3	XM_224366.3		306038	62661744	XM_224366.3	LOC306038	XP_224366.3	ILMN_1361291	3440037	S	4372	CTAGCCATGCGAACCGCCAGACATCCCCATTCCATGAGAGAGCGCATCAC				15q11	"PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ31846 (predicted) (LOC306038), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_34857603-S	ILMN_57739	MESP1_PREDICTED	XM_218826.2	XM_218826.2		308766	34857603	XM_218826.2	Mesp1_predicted	XP_218826.2	ILMN_1371409	1050154	S	861	CTGGCACCGGGACAGGTGTTGATTGTGGCGCTGTTCATTCTTGTAGCTCT				1q31	"PREDICTED: Rattus norvegicus mesoderm posterior 1 (predicted) (Mesp1_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62645885	ILMN_57474	LOC499892	XM_575238.1	XM_575238.1		499892	62645885	XM_575238.1	LOC499892	XP_575238.1	ILMN_1649732	6590056	S	1533	GGCTGCAGTTTATGAGGCAGACACTACTGTATATGGCCCAGTCAGTCTGC					"PREDICTED: Rattus norvegicus LOC499892 (LOC499892), mRNA."
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Protein metabolism and modification -> Translational regulation	Rattus norvegicus	RefSeq	GI_6978794-S	ILMN_286152	EEF2K	NM_012947.1	NM_012947.1		25435	6978794	NM_012947.1	Eef2k	NP_037079.1	ILMN_1366045	6550576	S	4716	GCTAGCACTTGGAGGCCGAGGCTGGATTATGAGTTTGAAGCCACCCTGGA	1	+	179756597-179756646	1q35	"Rattus norvegicus eukaryotic elongation factor-2 kinase (Eef2k), mRNA."	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	"Functions in chain elongation during polypeptide synthesis at the ribosome [goid 3746] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the phosphorylation of eukaryotic elongation factor-2 [goid 4686] [evidence IMP]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]"	SMEF2K	SMEF2K
Protease -> Serine protease;Defense/immunity protein -> Complement component	Protein metabolism and modification -> Proteolysis;Immunity and defense -> Complement-mediated immunity	Rattus norvegicus	RefSeq	GI_20302094-S	ILMN_266241	C1S	NM_138900.1	NM_138900.1		192262	20302094	NM_138900.1	C1s	NP_620255.1	ILMN_1367457	6900593	S	2705	TCGACAGGTTGTCTGAAACACTATGCAGTCAGGGAACACAGCCTTTTTTC	4	-	160736277-160736326	4q42	"Rattus norvegicus complement component 1, s subcomponent (C1s), mRNA."	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IDA]	"The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence IEA]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence IEP]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]"	"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]"	r-gsp	r-gsp
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62655053-S	ILMN_275074	RGD1304775_PREDICTED	XM_001066248.1	XM_001066248.1		316399	109487144	XM_001066248.1	RGD1304775_predicted	XP_001066248.1	ILMN_1357852	4150093	S	2945	GGCAGGAGCTAGAAAGCCGATGCAAGGACCTGGAAGACACCATCAGACAC				9q31	"PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp434P055 (predicted) (RGD1304775_predicted), mRNA."
Hydrolase	Lipid, fatty acid and steroid metabolism -> Phospholipid metabolism;Signal transduction -> Intracellular signaling cascade -> Other intracellular signaling cascade	Rattus norvegicus	RefSeq	GI_61889095-S	ILMN_70152	SMPD2	NM_031360.2	NM_031360.2		83537	61889095	NM_031360.2	Smpd2	NP_112650.1	ILMN_1365029	2570040	S	1358	TGGGGGCAGGCGCAGTCTACCTGTTCCACAAGCAGGAGGCCAAAAGCTTA	20	-	45448917-45448966	20q12	"Rattus norvegicus sphingomyelin phosphodiesterase 2, neutral (Smpd2), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus [goid 9612] [evidence IMP]; The chemical reactions and pathways resulting in the formation of ceramides, any N-acylated sphingoid [goid 46513] [evidence IDA]"	"Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: sphingomyelin + H2O = N-acylsphingosine + choline phosphate [goid 4767] [evidence IDA]; Catalysis of the reaction: sphingomyelin + H2O = N-acylsphingosine + choline phosphate [goid 4767] [evidence ISS]; Catalysis of the reaction: sphingomyelin + H2O = N-acylsphingosine + choline phosphate [goid 4767] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]"	nSMase	nSMase
Miscellaneous function -> Transmembrane receptor regulatory/adaptor protein	Signal transduction -> Cell surface receptor mediated signal transduction -> Other receptor mediated signaling pathway;Protein targeting and localization -> Asymmetric protein localization;Neuronal activities -> Synaptic transmission -> Nerve-nerve synaptic transmission	Rattus norvegicus	RefSeq	GI_6978762-S	ILMN_289392	DLG1	NM_012788.1	NM_012788.1		25252	6978762	NM_012788.1	Dlg1	NP_036920.1	ILMN_1349540	5890450	S	3052	GGAGCAGGAGTTCACTGAGCATTTCACAGCTATTGTCCAGGGAGACACGC	11	-	70735439-70735458:70738604-70738633	11q22	"Rattus norvegicus discs, large homolog 1 (Drosophila) (Dlg1), mRNA."	"An area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell formed through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and the target cell and facilitating activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction [goid 1772] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The region of the plasma membrane located at the basal end of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 9925] [evidence IDA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence TAS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence ISS]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence ISS]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence IDA]; The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible of the muscle contraction [goid 31594] [evidence ISS]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence TAS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]"	"The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure [goid 1657] [evidence ISS]; Branching of the ureteric bud [goid 1658] [evidence ISS]; The formation of an area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and target cell, which facilitates activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction [goid 1771] [evidence ISS]; The multiplication or reproduction of endothelial cells, resulting in the expansion of a cell population. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium [goid 1935] [evidence ISS]; The multiplication or reproduction of endothelial cells, resulting in the expansion of a cell population. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium [goid 1935] [evidence ISS]; The process whose specific outcome is the progression of the lens over time, from its formation to the mature structure. The lens is a transparent structure in the eye through which light is focused onto the retina [goid 2088] [evidence ISS]; Any process that contributes to cytokine production by a T cell [goid 2369] [evidence ISS]; Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence ISS]; Control of the spatial distribution of actin filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 7015] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEP]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence ISS]; A wavelike sequence of involuntary muscular contraction and relaxation that passes along a tubelike structure, such as the intestine, impelling the contents onwards [goid 30432] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of actin polymerization [goid 30838] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane [goid 30866] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane [goid 30866] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of membrane rafts, small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes [goid 31579] [evidence ISS]; Any process that initiates the activity of an inactive protein kinase [goid 32147] [evidence ISS]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42110] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of T cell proliferation [goid 42130] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; The chemical reactions and pathways involving amyloid precursor protein (APP), the precursor of beta-amyloid, a glycoprotein associated with Alzheimer's disease [goid 42982] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the mitotic cell cycle [goid 45930] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the mitotic cell cycle [goid 45930] [evidence ISS]; The reproductive developmental process whose specific outcome is the progression of structures that will be used in the process of creating new individuals from one or more parents, from their formation to the mature structures [goid 48608] [evidence ISS]; The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48704] [evidence ISS]; The process by which the anatomical structures of a tissue are generated and organized. Morphogenesis pertains to the creation of form [goid 48729] [evidence ISS]; The process whose specific outcome is the progression of smooth muscle over time, from its formation to the mature structure [goid 48745] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]; The biological process whose specific outcome is the progression of the hard palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. The hard palate is the anterior portion of the palate consisting of bone and mucous membranes [goid 60022] [evidence ISS]"	"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with any phosphatase [goid 19902] [evidence ISS]; Interacting selectively with any phosphatase [goid 19902] [evidence ISS]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Functions to provide a physical support for the assembly of a multiprotein complex [goid 32947] [evidence ISS]; Interacting selectively with an ionotropic glutamate receptor. Ionotropic glutamate receptors bind glutamate and exert an effect through the regulation of ion channels [goid 35255] [evidence IPI]; Interacting selectively with an ionotropic glutamate receptor. Ionotropic glutamate receptors bind glutamate and exert an effect through the regulation of ion channels [goid 35255] [evidence IPI]; Interacting selectively with a metabotropic glutamate receptor. Metabotropic glutamate receptors are G-protein coupled receptors that bind glutamate and exert an effect through the regulation of enzyme activity [goid 35256] [evidence IMP]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]"	Dlg1; SAP97	Dlg1; SAP97
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_62665572-S	ILMN_277407	OLR1729_PREDICTED	XM_001074863.1	XM_001074863.1		294186	109509700	XM_001074863.1	Olr1729_predicted	XP_001074863.1	ILMN_1355070	630139	S	325	TTCTTCCACTTCCTGGGTAGCACAGAGGCTTTACTGCTGACAATCATGGC				20p12	"PREDICTED: Rattus norvegicus olfactory receptor 1729 (predicted) (Olr1729_predicted), mRNA."
Hydrolase	Nucleoside, nucleotide and nucleic acid metabolism;Oncogenesis;Non-vertebrate process	Rattus norvegicus	RefSeq	GI_27229303-S	ILMN_287944	ELAC2	NM_172326.1	NM_172326.1		282826	27229303	NM_172326.1	Elac2	NP_758829.1	ILMN_1361657	380465	S	2595	CCACATCTGTCATCTTGGGAGCCAGCGCACACAATCTAGCCAGGAGGAAC	10	+	51312780-51312829	10q24	"Rattus norvegicus elaC homolog 2 (E. coli) (Elac2), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group [goid 8033] [evidence IEA]"	"Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]"
Transcription factor -> Other transcription factor;Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_62648760-S	ILMN_62406	LOC313125	XM_232858.3	XM_232858.3		313125	62648760	XM_232858.3	LOC313125	XP_232858.3	ILMN_1350062	5340706	S	4157	AGGACCTGCTTCTTTGAAGGGCACAGCTAACCCACCACCCGGCTTTCCTG				5q21	"PREDICTED: Rattus norvegicus similar to BTB and CNC homology 1, basic leucine zipper transcription factor 2 (LOC313125), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62648135-S	ILMN_262970	RGD1307916_PREDICTED	XM_001061970.1	XM_001061970.1		362433	109474188	XM_001061970.1	RGD1307916_predicted	XP_001061970.1	ILMN_1373083	4570546	S	243	TCAGACCCCTGGGAGAGAAGCTCCAAGAAAAGAGACAACTGGTGGGAGAG				4q42	"PREDICTED: Rattus norvegicus LOC362433 (predicted) (RGD1307916_predicted), mRNA."
Select regulatory molecule -> G-protein modulator -> Other G-protein modulator	Biological process unclassified	Rattus norvegicus	RefSeq	GI_34867850-S	ILMN_266780	LOC689443	XM_001070809.1	XM_001070809.1		689443	109481149	XM_001070809.1	LOC689443	XP_001070809.1	ILMN_2040813	4610487	S	717	CCTGCAGTTTGCCTTTCGCTGGATGAACAACCTGCTGATGCGGGAGCTGC	7	+	124386651-124386700	7q34	"PREDICTED: Rattus norvegicus similar to TBC1 domain family member 22A (LOC689443), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]"	Any process that modulates the activity of a GTPase of the Rab family [goid 32313] [evidence IEA]	Increases the rate of GTP hydrolysis by a GTPase of the Rab family [goid 5097] [evidence IEA]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62643483	ILMN_263107	LOC681542	XM_001057364.1	XM_001057364.1		681542	109466640	XM_001057364.1	LOC681542	XP_001057364.1	ILMN_1650000	3850139	S	619	AACAAACCACTGCAGGAGAGTGGTCCGAAGCATCAAGTAGCCTGAGGTCC					"PREDICTED: Rattus norvegicus similar to COMM domain-containing protein 2 (LOC681542), mRNA."
Receptor -> Nuclear hormone receptor;Transcription factor -> Nuclear hormone receptor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Signal transduction;Immunity and defense -> Stress response;Developmental processes -> Ectoderm development	Rattus norvegicus	RefSeq	GI_13242296-S	ILMN_291053	NR4A1	NM_024388.1	NM_024388.1		79240	13242296	NM_024388.1	Nr4a1	NP_077364.1	ILMN_1361354	510619	S	2227	AATACAGAAAGGAAGAGGTCGGGGTGGGGGTTTGAGAGGAAGGGTGGGCC	7	+	140020333-140020382	7q36	"Rattus norvegicus nuclear receptor subfamily 4, group A, member 1 (Nr4a1), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]"	"Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of caspase activity [goid 43154] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of caspase activity [goid 43154] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]"	"The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]"	Nur77; HMR; Ngfi-b	Nur77; HMR; Ngfi-b
Protease -> Serine protease	Protein metabolism and modification -> Proteolysis;Immunity and defense -> Granulocyte-mediated immunity;Apoptosis	Rattus norvegicus	RefSeq	GI_62661501-S	ILMN_264652	MCPT4L1	XM_001056983.1	XM_001056983.1		408208	109502429	XM_001056983.1	Mcpt4l1	XP_001056983.1	ILMN_1362667	2470278	S	540	GAGGGAGATCAAACTGAGAAAGGAAAAGGAGGCCTGTAAGGACTATAGGC				15p13	"PREDICTED: Rattus norvegicus mast cell protease 4-like 1 (Mcpt4l1), mRNA."		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	"Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]"
Nucleic acid binding -> Primase;Transferase -> Nucleotidyltransferase	Nucleoside, nucleotide and nucleic acid metabolism -> DNA metabolism -> DNA replication;Cell cycle -> DNA replication;Nucleoside, nucleotide and nucleic acid metabolism -> DNA metabolism -> DNA replication;Cell cycle -> DNA replication	Rattus norvegicus	RefSeq	GI_62654812-S	ILMN_270579	PRIM2	NM_001024762.1	NM_001024762.1		301323	67078419	NM_001024762.1	Prim2	NP_001019933.1	ILMN_1355020	1190204	S	1639	GAAGGAAGCAAGCCACCCAGAAACGCCTCAGCACAAACCCAGCACCCAGA	9	-	32206698-32206747	9q21	"Rattus norvegicus DNA primase, p58 subunit (Prim2), mRNA."	"That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A complex of four polypeptides, comprising large and small DNA polymerase alpha subunits and two primase subunits, which catalyzes the synthesis of an RNA primer on the lagging strand of replicating DNA; the smaller of the two primase subunits alone can catalyze oligoribonucleotide synthesis [goid 5658] [evidence IEA]; A complex of four polypeptides, comprising large and small DNA polymerase alpha subunits and two primase subunits, which catalyzes the synthesis of an RNA primer on the lagging strand of replicating DNA; the smaller of the two primase subunits alone can catalyze oligoribonucleotide synthesis [goid 5658] [evidence IEA]"	"The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence NAS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The synthesis of a short RNA polymer, usually 4-15 nucleotides long, using one strand of unwound DNA as a template; the RNA then serves as a primer from which DNA polymerases extend synthesis [goid 6269] [evidence IEA]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; The synthesis of a short RNA polymer, usually 4-15 nucleotides long, using one strand of unwound DNA as a template; the RNA then serves as a primer from which DNA polymerases extend synthesis [goid 6269] [evidence IEA]"	"Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the synthesis of a short RNA primer on a DNA template, providing a free 3'-OH that can be extended by DNA-directed DNA polymerases. Catalyzed by a DNA-directed RNA polymerase that forms a complex with alpha DNA polymerase [goid 3896] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands [goid 51539] [evidence IEA]; Catalysis of the synthesis of a short RNA primer on a DNA template, providing a free 3'-OH that can be extended by DNA-directed DNA polymerases. Catalyzed by a DNA-directed RNA polymerase that forms a complex with alpha DNA polymerase [goid 3896] [evidence IEA]"	Pola3	Pola3
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_34854146-S	ILMN_283399	RGD1560158_PREDICTED	XM_342191.1	XM_342191.1		361894	34854146	XM_342191.1	RGD1560158_predicted	XP_342192.1	ILMN_1356431	3140546	S	203	CCGAGGTAGACTATGAAGCAGGAGACATCCCAACAGAGTGGGAAGCATGG	2	-	39297116-39297121:39307355-39307398	2q14	"PREDICTED: Rattus norvegicus RGD1560158 (predicted) (RGD1560158_predicted), mRNA."
Nucleic acid binding -> Translation factor -> Translation initiation factor	Protein metabolism and modification -> Protein biosynthesis;Protein metabolism and modification -> Translational regulation	Rattus norvegicus	RefSeq	GI_27665245-S	ILMN_266960	LOC683907	XM_001068011.1	XM_001068011.1		683907	109490532	XM_001068011.1	LOC683907	XP_001068011.1	ILMN_2040576	2070747	S	816	TGAGGACGAGGAGTCTGATCACAACTGATGGCGGGTGGGGCAGGGGACTT					"PREDICTED: Rattus norvegicus similar to eukaryotic translation initiation factor 4, gamma 1 isoform a (LOC683907), mRNA."
		Rattus norvegicus	RefSeq	GI_62667203-S	ILMN_49478	LOC302340	XM_228468.3	XM_228468.3		302340	62667203	XM_228468.3	LOC302340	XP_228468.3	ILMN_1371896	3780050	S	522	CAAGACGACTGCTACTCCATGACACACTCCGGCTGCATCCTCATCAGACA				Xq32	"PREDICTED: Rattus norvegicus similar to beta-actin (LOC302340), mRNA."
Nucleic acid binding;Hydrolase -> Deaminase	Nucleoside, nucleotide and nucleic acid metabolism -> Pyrimidine metabolism;Nucleoside, nucleotide and nucleic acid metabolism -> Pre-mRNA processing;Protein metabolism and modification	Rattus norvegicus	RefSeq	GI_55742830-S	ILMN_280483	APOBEC1	NM_012907.2	NM_012907.2		25383	55742830	NM_012907.2	Apobec1	NP_037039.1	ILMN_1368847	1940487	S	770	CTGTGGGGAGTGCTCCAGGGCCATTACAGAATTTTTGAGCCGATACCCCC	4	-	159036208-159036257	4q42	"Rattus norvegicus apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 (Apobec1), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence NAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]"	"Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell [goid 6970] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus [goid 10043] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum [goid 10332] [evidence ISS]; The conversion of a cytosine residue to uridine in an RNA molecule by deamination [goid 16554] [evidence IDA]; The conversion of a cytosine residue to uridine in an RNA molecule by deamination [goid 16554] [evidence ISS]; The conversion of a cytosine residue to uridine in an RNA molecule by deamination [goid 16554] [evidence IEA]; The covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically [goid 16556] [evidence IDA]; The covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically [goid 16556] [evidence ISS]; The covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically [goid 16556] [evidence IEA]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms [goid 32869] [evidence IEP]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence ISS]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42158] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; The directed movement of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids, into, out of, within or between cells [goid 42953] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IDA]; The chemical reactions and pathways involving cytidine, cytosine riboside, a widely distributed nucleoside [goid 46087] [evidence IC ]; Prevention of degradation of mRNA molecules. In the absence of compensating changes in other processes, the slowing of mRNA degradation can result in an overall increase in the population of active mRNA molecules [goid 48255] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IDA]; Reactions triggered in response to the presence of a virus that act to protect the cell or organism [goid 51607] [evidence IDA]"	"Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence NAS]; Catalysis of the reaction: cytidine + H2O = uridine + NH3 [goid 4126] [evidence IDA]; Catalysis of the reaction: cytidine + H2O = uridine + NH3 [goid 4126] [evidence NAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with AU-rich elements within the 3' untranslated region of mRNAs [goid 17091] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]"	REPR	REPR
Transcription factor -> HMG box transcription factor;Nucleic acid binding -> Chromatin/chromatin-binding protein	Nucleoside, nucleotide and nucleic acid metabolism -> Chromatin packaging and remodeling	Rattus norvegicus	RefSeq	GI_62657142-S	ILMN_68735	UBTF	XM_340913.3	XM_340913.3		25574	109489109	XM_340913.3	Ubtf	XP_340914.1	ILMN_1359692	5910592	S	2906	GGCATGGACAGTGGACCGGAGAGTTTGGGGGTGGGAGCGTGTTCTAAAGA	10	-	91385713-91385762	10q32.1	"PREDICTED: Rattus norvegicus upstream binding transcription factor, RNA polymerase I (Ubtf), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]"	"The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47577784-S	ILMN_270639	OLR1239	NM_001000811.1	NM_001000811.1		405097	47577784	NM_001000811.1	Olr1239	NP_001000811.1	ILMN_1363032	1170441	S	763	AGTGCATTTGCATATTTCAAATCCTCCTCAGCTGGGTCTTGGGATGAAGG	8	+	40599369-40599418	8q22	"Rattus norvegicus olfactory receptor 1239 (Olr1239), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1239	Olr1239
		Rattus norvegicus	RefSeq	GI_62662626-S	ILMN_288197	RGD1562856_PREDICTED	XR_007515.1	XR_007515.1		498627	109514066	XR_007515.1	RGD1562856_predicted		ILMN_1373462	4730093	S	257	AAGGTGTGGAGGGCAGAGCCAGGGAGGAGTGAGAATGTCTTGGGACCGGA				16p11	"PREDICTED: Rattus norvegicus similar to nidogen 2 protein (predicted) (RGD1562856_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_34861271-A	ILMN_51138	H19	XR_000314.1	XR_000314.1		309122	62641651	XR_000314.1	H19		ILMN_1376550	2340368	S	619	CCTGCCTCAGGAATCGGCTCGAAGGTAAAGCTGAAGGAACAGACGGTGAC					"PREDICTED: Rattus norvegicus H19 fetal liver mRNA (H19), misc RNA."		"Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]"
		Rattus norvegicus	RefSeq	GI_62641651-I	ILMN_51138	H19	XR_000314.1	XR_000314.1		309122	62641651	XR_000314.1	H19		ILMN_1375895	3610152	S	34	TCATGACAGGACGAGTGCGGGTGCGGGGTGAGGCGAACGTGCGCTGGAAA					"PREDICTED: Rattus norvegicus H19 fetal liver mRNA (H19), misc RNA."		"Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]"
Phosphatase -> Protein phosphatase	Protein metabolism and modification -> Protein modification;Developmental processes -> Ectoderm development;Cell structure and motility -> Cell motility	Rattus norvegicus	RefSeq	GI_62660123-S	ILMN_286408	LOC498331	XM_001059696.1	XM_001059696.1		498331	109500257	XM_001059696.1	LOC498331	XP_001059696.1	ILMN_1365973	5130672	S	7902	GGACCGGACAAAGCAGGTCTTAGGGCTGGAGACAGCATTTGATCATAGTG				14p22	"PREDICTED: Rattus norvegicus similar to protein Tyr phosphatase (LOC498331), mRNA."
Phosphatase -> Protein phosphatase	Protein metabolism and modification -> Protein modification;Developmental processes -> Ectoderm development;Cell structure and motility -> Cell motility	Rattus norvegicus	RefSeq	GI_62660125-S	ILMN_286408	LOC498331	XM_001059696.1	XM_001059696.1		498331	109500257	XM_001059696.1	LOC498331	XP_001059696.1	ILMN_1351444	3610093	S	6663	CCCGTCAAAGAGGAAGCCACGCAGGAAAGCAGAGAGTCGACAACGGAGAC				14p22	"PREDICTED: Rattus norvegicus similar to protein Tyr phosphatase (LOC498331), mRNA."
Nucleic acid binding -> Nuclease	Nucleoside, nucleotide and nucleic acid metabolism -> Pre-mRNA processing -> mRNA splicing;Protein metabolism and modification -> Protein biosynthesis;Other metabolism	Rattus norvegicus	RefSeq	GI_62650927-S	ILMN_61435	RGD1566139_PREDICTED	XM_229709.4	XM_229709.4		302133	109478410	XM_229709.4	RGD1566139_predicted	XP_229709.3	ILMN_1349045	4850494	S	937	TCAAAATGTGGCCCATGAGGTTCTGTGCCTGGAGATGCTCACTTTGCTGC	6	-	103548468-103548517	6q24	"PREDICTED: Rattus norvegicus similar to Ac2-155 (predicted) (RGD1566139_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_8393414-S	ILMN_292869	GAP43	NM_017195.1	NM_017195.1		29423	8393414	NM_017195.1	Gap43	NP_058891.1	ILMN_1356366	5670114	S	1167	CTTGCACTGTACCCCGGTTTTTTGATCTGGTGCGTGTGGCCCTGTGGGAG	11	+	60083655-60083704	11q21	"Rattus norvegicus growth associated protein 43 (Gap43), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence TAS]; A prolongation or process extending from a cell, e.g. a flagellum or axon [goid 42995] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]"	"Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEP]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell [goid 10001] [evidence IEA]; The recognition of molecules at a choice point by an axon growth cone; at a choice point the growth cone determines the direction of its future growth [goid 16198] [evidence ISS]; The recognition of molecules at a choice point by an axon growth cone; at a choice point the growth cone determines the direction of its future growth [goid 16198] [evidence IEA]; Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development [goid 40008] [evidence IEA]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEP]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence ISS]; The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field [goid 45165] [evidence IEA]"	"Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]"	Basp2	Basp2
Protease -> Metalloprotease	Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_31542414-S	ILMN_297225	CPA1	NM_016998.2	NM_016998.2		24269	31542414	NM_016998.2	Cpa1	NP_058694.1	ILMN_1365546	2690162	S	1540	TGGACCACACAGTCAAACACCCCTACTGAAAGCAGCCCTTATCCCCCACC	4	+	57555294-57555322:57555323-57555343	4q22	"Rattus norvegicus carboxypeptidase A1 (Cpa1), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]"	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein during the chemical reactions and pathways resulting in the breakdown of a protein by individual cells [goid 51603] [evidence TAS]	"Catalysis of the hydrolysis of C-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4181] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain, in a reaction that requires a free N-terminal amino group, C-terminal carboxyl group or both [goid 8238] [evidence IDA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]"
Transcription factor -> Zinc finger transcription factor -> KRAB box transcription factor	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62647187	ILMN_269966	REPIN1	NM_001005893.1	NM_001005893.1		445541	54312115	NM_001005893.1	Repin1	NP_001005893.1	ILMN_1650033	4050037	S	1589	CTTCTGCTGTGCCATCTGCGGCCAGACCTTTGACGATGAGGACCGTCTCT	4	+	76690013-76690062	4q24	"Rattus norvegicus replication initiator 1 (Repin1), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Ap-4; Ap4	Ap-4; Ap4
Membrane traffic protein -> Membrane traffic regulatory protein	Intracellular protein traffic -> Endocytosis;Protein targeting and localization -> Protein targeting	Rattus norvegicus	RefSeq	GI_16758147-S	ILMN_293046	SNX1	NM_053411.1	NM_053411.1		84471	16758147	NM_053411.1	Snx1	NP_445863.1	ILMN_1369110	1300035	S	1632	AGGGCCATCTCCTGAGGGACCAAGGAGACCAGAGCCTACCTTCGTGACGC	8	-	70370682-70370717:70370718-70370731	8q24	"Rattus norvegicus sorting nexin 1 (Snx1), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The lipid bilayer surrounding an endosome [goid 10008] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"	"The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The directed movement of substances from endosomes to lysosomes [goid 8333] [evidence IPI]"	"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IPI]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]"	MGC105373	MGC105373
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62640961-S	ILMN_285020	XRRA1_PREDICTED	XM_001066474.1	XM_001066474.1		365313	109462491	XM_001066474.1	Xrra1_predicted	XP_001066474.1	ILMN_1351187	4920390	S	2389	GTGTTGCAGCGGCGTGGACAGCAGCGACTAGTGAACCAGAAGCAATACCG					"PREDICTED: Rattus norvegicus X-ray radiation resistance associated 1 (predicted) (Xrra1_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62640959-S	ILMN_285020	XRRA1_PREDICTED	XM_001066474.1	XM_001066474.1		365313	109462491	XM_001066474.1	Xrra1_predicted	XP_001066474.1	ILMN_1357242	6770377	S	1104	CCTACAACAGGTTCAGCTCCGTGATGGGACAGGGGACTGGGTTACAGAGG					"PREDICTED: Rattus norvegicus X-ray radiation resistance associated 1 (predicted) (Xrra1_predicted), mRNA."
Molecular function unclassified	Developmental processes -> Gametogenesis -> Spermatogenesis and motility	Rattus norvegicus	RefSeq	GI_40538848-S	ILMN_282337	SVS2	NM_012710.2	NM_012710.2		25013	40538848	NM_012710.2	Svs2	NP_036842.2	ILMN_1355000	2230673	S	1214	AGGGAGGGGCAGGCCTATATCAGGCTCAACTTAAGGGATAACATATTCAC	3	-	155180628-155180637:155180638-155180677	3q42	"Rattus norvegicus seminal vesicle secretory protein 2 (Svs2), mRNA."	"A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IEA]"	"The act of sexual union between male and female, involving the transfer of sperm [goid 7620] [evidence IEA]; The union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy) [goid 9566] [evidence ISS]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence IEA]; A process required for sperm to reach fertilization competence. Sperm undergo an incompletely understood series of morphological and molecular maturational processes, termed capacitation, involving, among other processes, protein tyrosine phosphorylation and increased intracellular calcium [goid 48240] [evidence ISS]; The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times [goid 19953] [evidence IEA]"	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any component on the surface of a eukaryotic cell [goid 43499] [evidence ISS]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]	Svs2p2; SVPIIA; RATSVPIIA	Svs2p2; SVPIIA; RATSVPIIA
Extracellular matrix -> Extracellular matrix structural protein	Signal transduction -> Cell communication;Cell adhesion;Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_62654794-S	ILMN_52638	COL9A1	XM_223124.4	XM_223124.4		305104	109485890	XM_223124.4	Col9a1	XP_223124.4	ILMN_1365064	2350072	S	2768	CTGCCAGCTATGGGAAAAATGGCCGAGATGGAGAGCAAGGTCCCCCAGGA	9	+	22989862-22989911	9q13	"PREDICTED: Rattus norvegicus procollagen, type IX, alpha 1 (Col9a1), mRNA."	"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]"	"A homeostatic process involved in the maintenance of an internal equilibrium within a defined tissue of an organism, including control of cellular proliferation and death and control of metabolic function [goid 1894] [evidence ISS]; The process whereby a chondroblast acquires specialized structural and/or functional features of a chondrocyte. A chondrocyte is a polymorphic cell that forms cartilage [goid 2062] [evidence IEP]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]"	"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]"
Oxidoreductase -> Oxygenase	Lipid, fatty acid and steroid metabolism -> Fatty acid metabolism;Lipid, fatty acid and steroid metabolism -> Steroid metabolism;Electron transport	Rattus norvegicus	RefSeq	GI_62639190-S	ILMN_281157	CYP2S1	XM_001077464.1	XM_001077464.1		308445	109461496	XM_001077464.1	Cyp2s1	XP_001077464.1	ILMN_1358204	4810440	S	431	AGCTCTCTGACGGGAAAGCTAGAGTGGAGCAAGGAAAAGCCAACCATGCC				1q21	"PREDICTED: Rattus norvegicus cytochrome P450, family 2, subfamily s, polypeptide 1 (Cyp2s1), mRNA."			"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]"
Transcription factor -> Other transcription factor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Signal transduction -> Intracellular signaling cascade -> NF-kappaB cascade;Immunity and defense -> B-cell- and antibody-mediated immunity;Apoptosis -> Inhibition of apoptosis;Developmental processes	Rattus norvegicus	RefSeq	GI_62644422-S	ILMN_266578	NFKB1	XM_001075876.1	XM_001075876.1		81736	109467593	XM_001075876.1	Nfkb1	XP_001075876.1	ILMN_1367023	5130253	S	2609	TGGAGGCCCTGCGACAGATGGGCTACACAGAGGCCATTGAAGTGATCCAG				2q43	"PREDICTED: Rattus norvegicus nuclear factor of kappa light chain gene enhancer in B-cells 1, p105 (Nfkb1), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]"	"The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-12 [goid 45083] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus [goid 46688] [evidence IEP]"	"Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Any activity that stops or downregulates transcription of specific genes or sets of genes [goid 16566] [evidence ISS]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IPI]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IDA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62651274-S	ILMN_277015	RGD1307749_PREDICTED	XM_001071760.1	XM_001071760.1		299338	109480016	XM_001071760.1	RGD1307749_predicted	XP_001071760.1	ILMN_1362805	4150139	S	2324	ATGCTCAGCCAGGGGGAACCAAGAGATGAGGCATCCCAGGCATTTGTGGG				6q32	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1600013K19 (predicted) (RGD1307749_predicted), mRNA."
Ligase -> Ubiquitin-protein ligase	Developmental processes -> Gametogenesis;Developmental processes -> Ectoderm development -> Neurogenesis;Cell proliferation and differentiation;Cell structure and motility -> Cell motility	Rattus norvegicus	RefSeq	GI_62646364-I	ILMN_58389	NEURL2_PREDICTED	XM_230848.4	XM_230848.4		311633	109469239	XM_230848.4	Neurl2_predicted	XP_230848.2	ILMN_1375676	4210050	S	118	GACTTCCAGTCCAAAGGCGGCTCCAGGAGAGCAAGGACACAAGGAAGCAG	3	-	155866229-155866278	3q42	"PREDICTED: Rattus norvegicus neuralized-like 2 (Drosophila) (predicted) (Neurl2_predicted), mRNA."
Ligase -> Ubiquitin-protein ligase	Developmental processes -> Gametogenesis;Developmental processes -> Ectoderm development -> Neurogenesis;Cell proliferation and differentiation;Cell structure and motility -> Cell motility	Rattus norvegicus	RefSeq	GI_62646363-S	ILMN_58389	NEURL2_PREDICTED	XM_230848.4	XM_230848.4		311633	109469239	XM_230848.4	Neurl2_predicted	XP_230848.2	ILMN_1350548	1570019	S	1148	CGCTGTGGTAGATGTGTTTGCCTCCACCAAGAGTGTGCGCCTGGTCCAAC	3	-	155865199-155865248	3q42	"PREDICTED: Rattus norvegicus neuralized-like 2 (Drosophila) (predicted) (Neurl2_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62647842-S	ILMN_63121	LOC500258	XM_575608.1	XM_575608.1		500258	62647842	XM_575608.1	LOC500258	XP_575608.1	ILMN_1358723	6370538	S	2430	CCTGTTTTGAAGAAGGCTTGAGTCAGCAAAGGGGTGTGGAGCTGCCCCTG				4q34	"PREDICTED: Rattus norvegicus similar to chromosome 3 open reading frame 20 (LOC500258), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47577586-S	ILMN_279449	OLR527	NM_001000675.1	NM_001000675.1		404878	47577586	NM_001000675.1	Olr527	NP_001000675.1	ILMN_1362934	5570301	S	467	CCTCTGTCACTGTGTTTGGCATGAGTAACCTGCATTTCTGCAAGTCCAAC	3	-	70252916-70252965	3q24	"Rattus norvegicus olfactory receptor 527 (Olr527), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr527	Olr527
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_34859196-S	ILMN_270777	LOC688103	XM_001081142.1	XM_001081142.1		688103	109470812	XM_001081142.1	LOC688103	XP_001081142.1	ILMN_1371046	3060397	S	273	CTCCGTGATTGGCTTCGTGTGGTCGCATCTGACAAGGAGACTTATGAACT					"PREDICTED: Rattus norvegicus similar to ribosomal protein L22 like 1 (LOC688103), mRNA."
Cytoskeletal protein -> Intermediate filament -> Intermediate filament binding protein	Cell adhesion;Developmental processes -> Ectoderm development;Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_62657370-S	ILMN_275582	EVPL_PREDICTED	XM_001081714.1	XM_001081714.1		303687	109492265	XM_001081714.1	Evpl_predicted	XP_001081714.1	ILMN_1367755	6040594	S	6003	CCAGCTACGAGAAGGATTTGACAGACCCCATCACCAAGGAGAGGCTGAGC				10q32.3	"PREDICTED: Rattus norvegicus envoplakin (predicted) (Evpl_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47577950-S	ILMN_267991	OLR1122	NM_001000882.1	NM_001000882.1		405181	47577950	NM_001000882.1	Olr1122	NP_001000882.1	ILMN_1373146	5860156	S	757	GGTACAGCATTGGGTGTTTATATTAGCTCTGCAGTCACGACCTCAGTCAC	8	-	16883134-16883183	8q13	"Rattus norvegicus olfactory receptor 1122 (Olr1122), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1122	Olr1122
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62661080-S	ILMN_56973	RGD1560592_PREDICTED	XM_577379.2	XM_577379.2		501952	109501246	XM_577379.2	RGD1560592_predicted	XP_577379.2	ILMN_1368158	2690736	S	5	GAAAATTCATCAATCTGCTCCGGCAGTCCCAGTCCTATTGCACCAACACA	15	+	5528439-5528488	15p16	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110003E01 (predicted) (RGD1560592_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62078762-S	ILMN_278774	RGD1311107	NM_001014016.1	NM_001014016.1		308428	62078762	NM_001014016.1	RGD1311107	NP_001014038.1	ILMN_1372540	4200059	S	1490	AATGCAGTGGAAAAGCGGAGCAGTGGGGAAGGAACCAGCGAGGAAGCCCC	1	-	79675200-79675249	1q21	"Rattus norvegicus similar to hypothetical protein R30953_1 (RGD1311107), mRNA."			"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]"
		Rattus norvegicus	RefSeq	GI_62638760-S	ILMN_65304	LOC365128	XM_344829.2	XM_344829.2		365128	62638760	XM_344829.2	LOC365128	XP_344830.2	ILMN_1366440	4670735	S	1837	GCTGCACAGCCCAGGCACAGCAAAATGCTCATCCAAAAGGAGGCAAAAGA					"PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC365128), mRNA."
Receptor -> Ligand-gated ion channel -> Acetylcholine receptor;Ion channel -> Ligand-gated ion channel -> Acetylcholine receptor;Transporter -> Cation transporter	Signal transduction -> Cell communication;Transport -> Ion transport -> Cation transport;Neuronal activities -> Synaptic transmission -> Neuromuscular synaptic transmission;Muscle contraction	Rattus norvegicus	RefSeq	GI_8393128-S	ILMN_292260	CHRNE	NM_017194.1	NM_017194.1		29422	8393128	NM_017194.1	Chrne	NP_058890.1	ILMN_1359490	6940309	S	1293	GCCCCTGAAGTCCGCTGCTGTGTGGATGCTGTGAACTTTGTGGCTGAGAG	10	-	57497544-57497593	10q24	"Rattus norvegicus cholinergic receptor, nicotinic, epsilon (Chrne), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IMP]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]"	"The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence IEA]"	 [goid 4889] [evidence ISS];  [goid 4889] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Combining with a neurotransmitter to initiate a change in cell activity [goid 30594] [evidence IEA]
Membrane traffic protein -> Membrane traffic regulatory protein	Intracellular protein traffic -> Endocytosis;Transport;Neuronal activities -> Synaptic transmission -> Neurotransmitter release	Rattus norvegicus	RefSeq	GI_11560001-S	ILMN_297265	AMPH	NM_022217.1	NM_022217.1		60668	11560001	NM_022217.1	Amph	NP_071553.1	ILMN_1359382	6980132	S	1888	ACCCTACAAAGGGGTGATGTGGTGCTCGTGGTGCCCTCAGACTCAGAAGC	17	-	53569281-53569330	17q11	"Rattus norvegicus amphiphysin (Amph), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]"	Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence ISS]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence IEA]; Any process that modulates the rate of GTP hydrolysis by a GTPase [goid 43087] [evidence IMP]; Invagination of the axonal plasma membrane creating a membrane-bounded vesicle. Without this process the presynaptic terminal would swell up due to fusion of vesicle membranes during neurotransmitter release. The vesicles created may subsequently be used for neurotransmitter storage/release [goid 48488] [evidence ISS]; Invagination of the axonal plasma membrane creating a membrane-bounded vesicle. Without this process the presynaptic terminal would swell up due to fusion of vesicle membranes during neurotransmitter release. The vesicles created may subsequently be used for neurotransmitter storage/release [goid 48488] [evidence IEA]	"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IMP]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62648864-S	ILMN_267526	ACY1L2_PREDICTED	XM_001064002.1	XM_001064002.1		313130	109476296	XM_001064002.1	Acy1l2_predicted	XP_001064002.1	ILMN_1356392	60441	S	1081	ATCGGGACTGATGCCTTGAACCACACGGAAGAGTACACAGAAGCCGCAGG				5q21	"PREDICTED: Rattus norvegicus aminoacylase 1-like 2 (predicted) (Acy1l2_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62651074	ILMN_294971	FAM164C	NM_001014079.1	NM_001014079.1		314321	62078890	NM_001014079.1	Fam164c	NP_001014101.1	ILMN_1650965	2030037	S	1453	GCACGAGTCTTTTATCCGTACCCTCCGGCATGCACGACAAGTCCAGCAGG	6	+	109343208-109343257	6q31	"Rattus norvegicus family with sequence similarity 164, member C (Fam164c), mRNA."
Receptor -> Nuclear hormone receptor;Transcription factor -> Nuclear hormone receptor;Nucleic acid binding	Lipid, fatty acid and steroid metabolism -> Regulation of lipid, fatty acid and steroid metabolism;Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Coenzyme and prosthetic group metabolism -> Vitamin metabolism;Signal transduction	Rattus norvegicus	RefSeq	GI_58531216-A	ILMN_287912	RXRB	NM_206849.2	NM_206849.2		361801	77404366	NM_206849.2	Rxrb	NP_996731.2	ILMN_1376944	1190497	S	1662	CCAGGGGTCTGGCAACACTTAACAGGGTTTGCGTGGTCCCCAAGTCAGAG	20	-	4955105-4955154	20p12	"Rattus norvegicus retinoid X receptor beta (Rxrb), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The ventricle is the part of the heart that pumps blood away from the organ [goid 55012] [evidence ISS]; The expansion of a cardiac muscle cell population by cell division [goid 60038] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]"	"The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA];  [goid 3706] [evidence ISS]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA];  [goid 4886] [evidence IDA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA];  [goid 30375] [evidence IDA]; Interacting selectively with the vitamin D receptor, a nuclear receptor that mediates the action of vitamin D by binding DNA and controlling the transcription of hormone-sensitive genes [goid 42809] [evidence IDA]; Interacting selectively with the retinoic acid receptor, a ligand-regulated transcription factor belonging to the nuclear receptor superfamily [goid 42974] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a thyroid hormone receptor [goid 46966] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]"	RXR-beta	RXR-beta
Receptor -> Nuclear hormone receptor;Transcription factor -> Nuclear hormone receptor;Nucleic acid binding	Lipid, fatty acid and steroid metabolism -> Regulation of lipid, fatty acid and steroid metabolism;Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Coenzyme and prosthetic group metabolism -> Vitamin metabolism;Signal transduction	Rattus norvegicus	RefSeq	GI_62665691-I	ILMN_287912	RXRB	NM_206849.2	NM_206849.2		361801	77404366	NM_206849.2	Rxrb	NP_996731.2	ILMN_1375706	3870333	S	2382	GAGATGGGTGCTGGGCTGCATGGTTTTTGCCCTGGATCTCTTTTGGGGGG	20	-	4954385-4954434	20p12	"Rattus norvegicus retinoid X receptor beta (Rxrb), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The ventricle is the part of the heart that pumps blood away from the organ [goid 55012] [evidence ISS]; The expansion of a cardiac muscle cell population by cell division [goid 60038] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]"	"The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA];  [goid 3706] [evidence ISS]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA];  [goid 4886] [evidence IDA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA];  [goid 30375] [evidence IDA]; Interacting selectively with the vitamin D receptor, a nuclear receptor that mediates the action of vitamin D by binding DNA and controlling the transcription of hormone-sensitive genes [goid 42809] [evidence IDA]; Interacting selectively with the retinoic acid receptor, a ligand-regulated transcription factor belonging to the nuclear receptor superfamily [goid 42974] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a thyroid hormone receptor [goid 46966] [evidence IDA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Combining with a steroid hormone to initiate a change in cell activity [goid 3707] [evidence IEA]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]"	RXR-beta	RXR-beta
		Rattus norvegicus	RefSeq	GI_62663013-S	ILMN_65362	LOC290908	XM_225046.3	XM_225046.3		290908	62663013	XM_225046.3	LOC290908	XP_225046.3	ILMN_1368650	6220161	S	342	CGCTCTGATGTGTGGCTTTTCCAGCTTGGTGTCCGCATCCGCAATGGAGG				16q12.5	"PREDICTED: Rattus norvegicus similar to ribosomal protein S23 (LOC290908), mRNA."
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis;Other metabolism	Rattus norvegicus	RefSeq	GI_62647655-S	ILMN_276900	MRPL19	NM_001029898.1	NM_001029898.1		297372	71361648	NM_001029898.1	Mrpl19	NP_001025069.1	ILMN_1373380	4670465	S	947	CTGGAGCCGAGGGTGGAAGGAGAATACTGACTCCTAAAGTTGCCCTCTGG	4	-	116207714-116207763	4q34	"Rattus norvegicus mitochondrial ribosomal protein L19 (Mrpl19), nuclear gene encoding mitochondrial protein, mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence ISS]"			Rpml15; MRP-L15	Rpml15; MRP-L15
Phosphatase -> Other phosphatase	Lipid, fatty acid and steroid metabolism -> Phospholipid metabolism;Signal transduction -> Cell surface receptor mediated signal transduction -> Receptor protein tyrosine kinase signaling pathway	Rattus norvegicus	RefSeq	GI_19424245-S	ILMN_273967	PIB5PA	NM_133562.1	NM_133562.1		171088	19424245	NM_133562.1	Pib5pa	NP_598246.1	ILMN_1349574	6130181	S	3199	TGGCACCACCTCAACTGTGACAATCAGCAAAGCCTCGCCTGGGCCCTCAT	14	-	84125874-84125923	14q21	"Rattus norvegicus phosphatidylinositol (4,5) bisphosphate 5-phosphatase, A (Pib5pa), mRNA."	"Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IDA]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"		"Catalysis of the removal of a phosphate group from phosphorylated myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4437] [evidence IEA]; Catalysis of the reactions: D-myo-inositol 1,4,5-trisphosphate + H2O = myo-inositol 1,4-bisphosphate + phosphate, and 1D-myo-inositol 1,3,4,5-tetrakisphosphate + H2O = 1D-myo-inositol 1,3,4-trisphosphate + phosphate [goid 4445] [evidence IDA]; Catalysis of the reactions: D-myo-inositol 1,4,5-trisphosphate + H2O = myo-inositol 1,4-bisphosphate + phosphate, and 1D-myo-inositol 1,3,4,5-tetrakisphosphate + H2O = 1D-myo-inositol 1,3,4-trisphosphate + phosphate [goid 4445] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]"	Inpp; Pipp	Inpp; Pipp
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62651080-S	ILMN_68987	RGD1310769_PREDICTED	XM_216756.4	XM_216756.4		299207	109478528	XM_216756.4	RGD1310769_predicted	XP_216756.3	ILMN_1359799	430592	S	1271	CTGCCCAGAGCAGCTGCAAGCAAGGGCTGCTTCATGGGGCTAAGCACATA	6	-	109934993-109935042	6q31	"PREDICTED: Rattus norvegicus similar to HSPC288 (predicted) (RGD1310769_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Pheromone response	Rattus norvegicus	RefSeq	GI_57113814-S	ILMN_276601	V1RA8	NM_001008948.1	NM_001008948.1		494294	57113814	NM_001008948.1	V1ra8	NP_001008948.1	ILMN_1355031	6510136	S	788	TCCAGGGAAACCCATCTCTCTATTGTGCCCAGATTCTTGTAGCTCATAGC	4	+	124057073-124057122	4q34	"Rattus norvegicus vomeronasal 1 receptor, A8 (V1ra8), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus [goid 19236] [evidence IEA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]
Molecular function unclassified	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_62645984-S	ILMN_285525	INSM1_PREDICTED	XM_001055419.1	XM_001055419.1		366210	109470953	XM_001055419.1	Insm1_predicted	XP_001055419.1	ILMN_1359438	870162	S	1537	CTCTACGAGTGCCACCACTGCGCCAAGAAGTTCCGTCGTCAGGCCTATCT				3q41	"PREDICTED: Rattus norvegicus insulinoma-associated 1 (predicted) (Insm1_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62667272-S	ILMN_53429	LOC501623	XM_580220.1	XM_580220.1		501623	62667272	XM_580220.1	LOC501623	XP_580220.1	ILMN_1360219	4120725	S	832	TGAGCACAGCTGAAGAATAATTGGGGCAGGGCTGACAACATGTGGAAGAC					"PREDICTED: Rattus norvegicus LOC501623 (LOC501623), mRNA."
Transcription factor -> Other transcription factor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription;Oncogenesis -> Oncogene	Rattus norvegicus	RefSeq	GI_62660119-S	ILMN_48569	MLLT2_PREDICTED	XM_223161.3	XM_223161.3		305152	62660119	XM_223161.3	Mllt2_predicted	XP_223161.3	ILMN_1355116	4670193	S	6278	CCTAATGACCCAACACGACCCCCCAACAAACCCACGGTAGAGGTGACTAG				14p22	"PREDICTED: Rattus norvegicus myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 2 (predicted) (Mllt2_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62652359-S	ILMN_65334	OXR1	XM_576258.2	XM_576258.2		117520	109480687	XM_576258.2	Oxr1	XP_576258.2	ILMN_1350714	2680433	S	3309	GGCCTGGGTTCCAGTAGTTTAACAGCCAGGTGGGATCTGTCAGCCCAGTG	7	+	77500809-77500858	7q31	"PREDICTED: Rattus norvegicus oxidation resistance 1 (Oxr1), mRNA."	"A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IDA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]"	"A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of a cell wall [goid 16998] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a cell wall [goid 16998] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62648985	ILMN_294964	RGD1307218	NM_001014190.1	NM_001014190.1		362518	62079106	NM_001014190.1	RGD1307218	NP_001014212.1	ILMN_1650261	540411	S	1342	CAATGTTGCTAGGTGTAAAGGCTCTGGGACAGTGGAGGAATGCACCCGAG	5	-	66327656-66327705	5q22	"Rattus norvegicus similar to RIKEN cDNA 2810432L12 (RGD1307218), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"			MGC109354	MGC109354
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62658213-I	ILMN_276519	RGD1559843_PREDICTED	XM_001073905.1	XM_001073905.1		500729	109480010	XM_001073905.1	RGD1559843_predicted	XP_001073905.1	ILMN_1375687	3360750	S	391	GCCTTCAGGGTGCATGGAAGGCCTGTGTTTGGGGCTGTTCGCACTATTGC				6q32	"PREDICTED: Rattus norvegicus RGD1559843 (predicted) (RGD1559843_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62651322-S	ILMN_276519	RGD1559843_PREDICTED	XM_001073905.1	XM_001073905.1		500729	109480010	XM_001073905.1	RGD1559843_predicted	XP_001073905.1	ILMN_1357523	6180333	S	2249	TGCCTCCTGATCCTGCCGAGAGTGGAAGCACCCCAGCTACAGAAGCACCT				6q32	"PREDICTED: Rattus norvegicus RGD1559843 (predicted) (RGD1559843_predicted), mRNA."
Signaling molecule -> Other signaling molecule	Apoptosis -> Inhibition of apoptosis;Oncogenesis	Rattus norvegicus	RefSeq	GI_51036649-S	ILMN_290086	MCL1	NM_021846.2	NM_021846.2		60430	51036649	NM_021846.2	Mcl1	NP_068618.2	ILMN_1357312	60347	S	1502	GCTAGAAGCTGCAGTGCTGTACAAGAGGGTGAAGGAGGATGTGCTCTGAG	2|NW_047645.1	-	136231-136280		"Rattus norvegicus myeloid cell leukemia sequence 1 (Mcl1), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]"	"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IPI]"
Select regulatory molecule -> G-protein modulator -> Other G-protein modulator	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Immunity and defense -> T-cell mediated immunity	Rattus norvegicus	RefSeq	GI_62643413-S	ILMN_292131	RGD1560995_PREDICTED	XM_227116.3	XM_227116.3		310390	62643413	XM_227116.3	RGD1560995_predicted	XP_227116.3	ILMN_1362715	1580427	S	2678	CCGGTCATTGTATTTCAATGTTCTCTTCTACCTCCCACAAACCATAGCGG	2	+	138086388-138086437	2q26	"PREDICTED: Rattus norvegicus similar to GTPase activating protein testicular GAP1 (predicted) (RGD1560995_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62655183-S	ILMN_286852	RGD1563521_PREDICTED	XR_007378.1	XR_007378.1		501161	109487283	XR_007378.1	RGD1563521_predicted		ILMN_1361681	3170471	S	751	CGCTTGAAGAAGGAAAAGAAGCGACTGGCTGCACTGGCCCTGACCTTTTC				9q33	"PREDICTED: Rattus norvegicus similar to Nol5a_predicted protein (predicted) (RGD1563521_predicted), mRNA."
Transcription factor -> Zinc finger transcription factor -> KRAB box transcription factor	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62656030-S	ILMN_67690	LOC497896	XM_573081.1	XM_573081.1		497896	62656030	XM_573081.1	LOC497896	XP_573081.1	ILMN_1358096	7050100	S	1945	CATGCGGGAAAGCGTTCAGTCAAAGCTCATCTCTTGCCAACCACCAGAAG				10q22	"PREDICTED: Rattus norvegicus similar to hypothetical protein 9630041N07 (LOC497896), mRNA."
Transcription factor -> Zinc finger transcription factor -> KRAB box transcription factor	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62667144-S	ILMN_68934	LOC302327	XM_228451.3	XM_228451.3		302327	62667144	XM_228451.3	LOC302327	XP_228451.3	ILMN_1355716	2190338	S	4123	GCATCCCTTAACAACGCTTTGTGTTAGCATGCTGCAAATCAAAATGGCGC				Xq32	"PREDICTED: Rattus norvegicus similar to ZNF6 protein (LOC302327), mRNA."
Kinase -> Other kinase	Lipid, fatty acid and steroid metabolism -> Phospholipid metabolism;Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling	Rattus norvegicus	RefSeq	GI_62642049	ILMN_264256	PIP5K1B	NM_001012743.1	NM_001012743.1		309419	60678263	NM_001012743.1	Pip5k1b	NP_001012761.1	ILMN_1650947	770072	S	2313	ATGGCCCGTCAGCAGATGGATGTGAAAAGCCCACACCGTTCTGTGGGTGC	1	-	227690258-227690307	1q51	"Rattus norvegicus phosphatidylinositol-4-phosphate 5-kinase, type I, beta (Pip5k1b), mRNA."	"A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles [goid 12505] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"	"The chemical reactions and pathways involving phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 46488] [evidence ISS]; The chemical reactions and pathways involving phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol [goid 46488] [evidence IEA]"	"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol 4-phosphate = ADP + 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate [goid 16308] [evidence ISS]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol 4-phosphate = ADP + 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate [goid 16308] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]"	MGC105713; Pip5k1a	MGC105713; Pip5k1a
Transcription factor -> Zinc finger transcription factor -> KRAB box transcription factor	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62648082-S	ILMN_296854	RGD1561270_PREDICTED	XM_001057394.1	XM_001057394.1		500304	109474111	XM_001057394.1	RGD1561270_predicted	XP_001057394.1	ILMN_1355485	6840195	S	2596	CCACCAGCGTCTTTATAGGTTGATAGGACTGTGTGTTTCTGGACATGTCT					"PREDICTED: Rattus norvegicus similar to Zinc finger protein 248 (predicted) (RGD1561270_predicted), mRNA."
Transcription factor -> Homeobox transcription factor;Nucleic acid binding -> Other DNA-binding protein	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_62666113	ILMN_58877	RGD1565550_PREDICTED	XM_574776.2	XM_574776.2		499453	109509570	XM_574776.2	RGD1565550_predicted	XP_574776.1	ILMN_1649730	2360519	S	1062	GACGCTCTCCCTAGGCCCTGTACATCTGAAAGGTGCAGTTCAGCAAATGC	20	+	38403256-38403305	20q12	"PREDICTED: Rattus norvegicus similar to double homeobox, 4 (predicted) (RGD1565550_predicted), mRNA."
Transcription factor -> Homeobox transcription factor;Nucleic acid binding -> Other DNA-binding protein	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_62666250	ILMN_58877	RGD1565550_PREDICTED	XM_574776.2	XM_574776.2		499453	109509570	XM_574776.2	RGD1565550_predicted	XP_574776.1	ILMN_1650570	1690280	S	1	ATGGAAGCTGGAAGCAATGTGGATAGCAGCTGTGTGCTGCGGGAATCCCG	20	+	38402195-38402244	20q12	"PREDICTED: Rattus norvegicus similar to double homeobox, 4 (predicted) (RGD1565550_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62655570-S	ILMN_56959	LOC501207	XR_000311.1	XR_000311.1		501207	62655570	XR_000311.1	LOC501207		ILMN_1372570	2970605	S	2266	GTTGCCACAGGGCCTCACTCTATCATCAGTGGGTACAAGCAGGTCCTGAT					"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810022L02 (LOC501207), mRNA."
		Rattus norvegicus	RefSeq	GI_62656862-S	ILMN_50814	LOC287637	XM_220885.3	XM_220885.3		287637	62656862	XM_220885.3	LOC287637	XP_220885.2	ILMN_1358969	2940438	S	1412	GGATAGGGACTGCCCTTCTGACCCTGATTTACCTCCTGGACTGACCTGGG				10q31	"PREDICTED: Rattus norvegicus similar to cDNA sequence BC034054 (predicted) (LOC287637), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47577020-S	ILMN_275538	OLR781	NM_001000375.1	NM_001000375.1		296035	47577020	NM_001000375.1	Olr781	NP_001000375.1	ILMN_1354691	6510242	S	401	CCATCATGAGCCCACGGATGTGCATCTTGTTTTCAGTGGCCTCCTGGTTG	3	-	97533728-97533777	3q34	"Rattus norvegicus olfactory receptor 781 (Olr781), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr781	Olr781
Defense/immunity protein -> Other defense and immunity protein	Immunity and defense -> Complement-mediated immunity	Rattus norvegicus	RefSeq	GI_6981187-S	ILMN_59501	MBL1	NM_012599.2	NM_012599.2		24548	61098192	NM_012599.2	Mbl1	NP_036731.2	ILMN_2039269	3370767	S	282	AGGAGCCCCTGGAAGTCAAGGACCAAAAGGCCAAAAAGGGGATCGTGGAG	16	+	17594359-17594408	16p14	"Rattus norvegicus mannose binding lectin (A) (Mbl1), mRNA."	"The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The lipid bilayer surrounding the rough endoplasmic reticulum [goid 30867] [evidence IEA]"	"Any process involved in the activation of any of the steps of the lectin pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes [goid 1867] [evidence IDA]; Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence IEA]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]"	"The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Interacting selectively with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans [goid 5537] [evidence IEA]; Interacting selectively with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans [goid 5537] [evidence IDA]; Interacting selectively with any polysaccharide [goid 30247] [evidence IDA]"	Mlb1; Mbpa	Mlb1; Mbpa
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62665022-S	ILMN_283359	ZSWIM4_PREDICTED	XM_001067858.1	XM_001067858.1		304655	109508553	XM_001067858.1	Zswim4_predicted	XP_001067858.1	ILMN_1353595	6420008	S	4431	TGAACACAGCTTCTAGAGTGGGACAGGAGGGGCTTCCAGTAGTATCACGG				19q11	"PREDICTED: Rattus norvegicus zinc finger, SWIM domain containing 4 (predicted) (Zswim4_predicted), mRNA."
Select regulatory molecule -> G-protein modulator -> Other G-protein modulator	Signal transduction -> Intracellular signaling cascade -> Other intracellular signaling cascade;Signal transduction -> Cell communication;Intracellular protein traffic;Transport	Rattus norvegicus	RefSeq	GI_62662669-S	ILMN_51475	SNX25	XM_224863.4	XM_224863.4		306471	109503353	XM_224863.4	Snx25	XP_224863.4	ILMN_1353074	1850593	S	3312	CACTGAGGATTCTGACCATTCCTGTGTCTCCCGTGTATTGAAGACCACTG	16	+	49518487-49518536	16q11	"PREDICTED: Rattus norvegicus sorting nexin 25 (Snx25), mRNA."		"Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]"	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]
		Rattus norvegicus	RefSeq	GI_62667612-S	ILMN_49232	LOC367975	XM_346380.2	XM_346380.2		367975	62667612	XM_346380.2	LOC367975	XP_346381.2	ILMN_1361309	1570128	S	79	GCTCTGGTGAAGGACACCCCCACACATCTCCCTTTTTAATCATTGCAGCC					"PREDICTED: Rattus norvegicus similar to B-cell translocation gene 1 (LOC367975), mRNA."
Select regulatory molecule -> Protease inhibitor -> Serine protease inhibitor	Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_6978496-S	ILMN_296812	AMBP	NM_012901.1	NM_012901.1		25377	6978496	NM_012901.1	Ambp	NP_037033.1	ILMN_1370481	50368	S	1015	GCAAGGAGTACTGTGGAGTCCCTGGTGATGGGTACGAGGAGCTAACACGC	5	-	80119821-80119824:80119825-80119850:80120564-80120583	5q24	"Rattus norvegicus alpha-1-microglobulin/bikunin precursor (Ambp), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]"	"The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The covalent or noncovalent linking of a chromophore to a protein [goid 18298] [evidence IEA]"	"Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with an immunoglobulin of an IgA isotype [goid 19862] [evidence ISS]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence ISS]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]"
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Cell cycle -> Cell cycle control;Cell cycle -> Mitosis	Rattus norvegicus	RefSeq	GI_62646796-S	ILMN_58924	CDK6	XM_342638.3	XM_342638.3		114483	109471703	XM_342638.3	Cdk6	XP_342639.2	ILMN_1374074	5900358	S	1721	TCTAACCTTGAATGCTGCCAGTGTAGAATGGGGATCCAGGCCCAGCGGAG	4	-	27362846-27362895	4q13	"PREDICTED: Rattus norvegicus cyclin-dependent kinase 6 (Cdk6), mRNA."	"Cyclin-dependent protein kinases (CDKs) are heterodimeric enzymes that contain a kinase catalytic subunit associated with a regulatory cyclin partner [goid 307] [evidence ISS]; Cyclin-dependent protein kinases (CDKs) are heterodimeric enzymes that contain a kinase catalytic subunit associated with a regulatory cyclin partner [goid 307] [evidence IEA]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"Progression through G1 phase, one of two 'gap' phases in the mitotic cell cycle; G1 is the interval between the completion of mitosis and the beginning of DNA synthesis [goid 80] [evidence ISS]; Progression through G1 phase, one of two 'gap' phases in the mitotic cell cycle; G1 is the interval between the completion of mitosis and the beginning of DNA synthesis [goid 80] [evidence IEA]; Any process that activates or increases the rate or extent of cell adhesion to an extracellular matrix [goid 1954] [evidence ISS]; Any process that activates or increases the rate or extent of cell adhesion to an extracellular matrix [goid 1954] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence IEA]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence IEA]; The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates [goid 30097] [evidence ISS]; The process by which glial cells are generated. This includes the production of glial progenitors and their differentiation into mature glia [goid 42063] [evidence ISS]; The process by which glial cells are generated. This includes the production of glial progenitors and their differentiation into mature glia [goid 42063] [evidence IEA]; The process whereby a specialized cell loses the structural or functional features that characterize it in the mature organism, or some other relatively stable phase of the organism's life history. Under certain conditions, these cells can revert back to the features of the stem cells that were their ancestors [goid 43697] [evidence ISS]; The process whereby a specialized cell loses the structural or functional features that characterize it in the mature organism, or some other relatively stable phase of the organism's life history. Under certain conditions, these cells can revert back to the features of the stem cells that were their ancestors [goid 43697] [evidence IEA]; Any process that modulates the frequency, rate or extent of erythrocyte differentiation [goid 45646] [evidence ISS]; Any process that modulates the frequency, rate or extent of erythrocyte differentiation [goid 45646] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoblast differentiation [goid 45668] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoblast differentiation [goid 45668] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells [goid 48146] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence IEA]"	"Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with cyclins, proteins whose levels in a cell varies markedly during the cell cycle, rising steadily until mitosis, then falling abruptly to zero. As cyclins reach a threshold level, they are thought to drive cells into G2 phase and thus to mitosis [goid 30332] [evidence ISS]; Interacting selectively with cyclins, proteins whose levels in a cell varies markedly during the cell cycle, rising steadily until mitosis, then falling abruptly to zero. As cyclins reach a threshold level, they are thought to drive cells into G2 phase and thus to mitosis [goid 30332] [evidence IEA]"
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47577058-S	ILMN_275544	OLR302	NM_001000238.1	NM_001000238.1		293600	47577058	NM_001000238.1	Olr302	NP_001000238.1	ILMN_1358601	5220193	S	282	CAAGGGATGTATGGCCCAACTCTTCTTCCTTGTGTGGTCTGCATCGTCTG	1	+	200459091-200459140	1q41	"Rattus norvegicus olfactory receptor 302 (Olr302), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr302; ratchr1-200608802-200609734_ORF	Olr302; ratchr1-200608802-200609734_ORF
Molecular function unclassified	Signal transduction -> Cell surface receptor mediated signal transduction;Signal transduction -> Intracellular signaling cascade;Homeostasis	Rattus norvegicus	RefSeq	GI_62658015-S	ILMN_280457	RGD1311861_PREDICTED	XM_001073139.1	XM_001073139.1		288042	109494528	XM_001073139.1	RGD1311861_predicted	XP_001073139.1	ILMN_1366132	4560400	S	519	AGCCTTTGAGCGTGGGTATGAGTTCCTGGGGGTTGCCTTCCGAGGACTTC				11q22	"PREDICTED: Rattus norvegicus similar to hypothetical protein MGC19444 (predicted) (RGD1311861_predicted), mRNA."
Transporter -> Amino acid transporter	Amino acid metabolism -> Amino acid transport;Transport -> Amino acid transport;Transport -> Small molecule transport;Other metabolism	Rattus norvegicus	RefSeq	GI_62656510-S	ILMN_53493	CTNS_PREDICTED	XM_220649.4	XM_220649.4		287478	109488503	XM_220649.4	Ctns_predicted	XP_220649.4	ILMN_1354257	1230017	S	900	GAGCATTGGTGGTGTGCTCCTGGATTTTACAGGGGGCAGCTTTAGCCTCC	10	-	60061409-60061458	10q24	"PREDICTED: Rattus norvegicus cystinosis, nephropathic (predicted) (Ctns_predicted), mRNA."
Transcription factor -> Transcription cofactor;Nucleic acid binding -> Other RNA-binding protein	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription	Rattus norvegicus	RefSeq	GI_62654387-S	ILMN_302213	LRRFIP2	NM_001024761.1	NM_001024761.1		301035	67078495	NM_001024761.1	Lrrfip2	NP_001019932.1	ILMN_1354141	630438	S	1589	CCACCTGGCAAAGCGGCTAGAGAAGATGAAGGCCAACAGGACAGCCCTTC	8	+	115612329-115612378	8q32	"Rattus norvegicus leucine rich repeat (in FLII) interacting protein 2 (Lrrfip2), mRNA."		The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state [goid 16055] [evidence IEA]
Signaling molecule -> Other signaling molecule;Cell adhesion molecule;Cytoskeletal protein	Signal transduction -> Cell communication -> Cell adhesion-mediated signaling	Rattus norvegicus	RefSeq	GI_41529836-S	ILMN_288011	JUP	NM_031047.2	NM_031047.2		81679	41529836	NM_031047.2	Jup	NP_112309.2	ILMN_1359114	1170427	S	3081	GTAGCGGGAGAGAGTGGAGACTTTTTAAGTGCCCCTGCTAGGACCTGCCC	10	-	89308246-89308295	10q32.1	"Rattus norvegicus junction plakoglobin (Jup), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence IDA]; A specialized region of connection between two cells including but not limited to gap junctions, desmosomes, and tight junctions, but excluding direct cytoplasmic junctions such as ring canals [goid 5911] [evidence ISS]; An adherens junction which connects two cells to each other [goid 5913] [evidence IDA]; An adherens junction which connects two cells to each other [goid 5913] [evidence ISS]; An electron dense junctional complex, at the end to end contacts of cardiac muscle cells, that contains gap junctions and desmosomes. Most of the disc is formed of a convoluted fascia adherens type of junction into which the actin filaments of the terminal sarcomeres insert (or in the case of muscle cells, myofibrils), desmosomes are also present. The lateral portion of the stepped disc contains gap junctions that couple the cells electrically and thus coordinate the contraction [goid 5916] [evidence IDA]; The side of the plasma membrane that faces the cytoplasm [goid 9898] [evidence IDA]; The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes [goid 15629] [evidence IDA]; The apical end of the lateral plasma membrane of epithelial cells [goid 16327] [evidence IDA]; The membranes on the sides of epithelial cells which lie at the interface of adjacent cells [goid 16328] [evidence IDA]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence ISS]; Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence IEA]; A specialised type of cell junction into which intermediate filaments of adjacent cells are inserted. This type of cell junction is characteristic of epithelia. Desmosomes are particularly conspicuous in tissues such as skin that have to withstand mechanical stress [goid 30057] [evidence IDA]; A specialised type of cell junction into which intermediate filaments of adjacent cells are inserted. This type of cell junction is characteristic of epithelia. Desmosomes are particularly conspicuous in tissues such as skin that have to withstand mechanical stress [goid 30057] [evidence ISS]; A specialised type of cell junction into which intermediate filaments of adjacent cells are inserted. This type of cell junction is characteristic of epithelia. Desmosomes are particularly conspicuous in tissues such as skin that have to withstand mechanical stress [goid 30057] [evidence IEA]"	"The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence ISS]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]"	"The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IPI]"
Ion channel -> Voltage-gated ion channel -> Voltage-gated potassium channel	Transport -> Ion transport -> Cation transport;Neuronal activities -> Synaptic transmission	Rattus norvegicus	RefSeq	GI_62643608-S	ILMN_55830	KCNMB3_PREDICTED	XM_227040.3	XM_227040.3		310303	62643608	XM_227040.3	Kcnmb3_predicted	XP_227040.3	ILMN_1353538	3990138	S	1160	AGCCCCAGGTGTGTTTCATCGTCACAGAGGCTTTCCCCGAAGACAGAGGC				2q25	"PREDICTED: Rattus norvegicus potassium large conductance calcium-activated channel, subfamily M beta member 3 (predicted) (Kcnmb3_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47577718-S	ILMN_273781	OLR586	NM_001000660.1	NM_001000660.1		404860	47577718	NM_001000660.1	Olr586	NP_001000660.1	ILMN_1366446	6110500	S	354	GGCTTTTGATCGGTACAAGGCCATCAGCAATCCCCTGATATATGCTGTAG	3	+	71532474-71532523	3q24	"Rattus norvegicus olfactory receptor 586 (Olr586), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr586	Olr586
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47578078-S	ILMN_268940	OLR596	NM_001001056.1	NM_001001056.1		405944	47578078	NM_001001056.1	Olr596	NP_001001056.1	ILMN_1367437	360315	S	872	GCCTGAGGAACAAGGATGTGAAGGAGGCCCTGAAAAAACTGAAAATGAAA	3	+	71665077-71665126	3q24	"Rattus norvegicus olfactory receptor 596 (Olr596), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr596	Olr596
Transporter -> Other transporter	Transport -> Ion transport -> Cation transport;Homeostasis	Rattus norvegicus	RefSeq	GI_62644231-S	ILMN_65672	SLC30A7	XM_227612.4	XM_227612.4		310801	109465417	XM_227612.4	Slc30a7	XP_227612.3	ILMN_1369680	380170	S	1208	CCTTGAAGCTTGTAGTAGCCCCTGATGCAGACGCCAGGTGGATCTTGAGC	2	-	212096204-212096253	2q41	"PREDICTED: Rattus norvegicus solute carrier family 30 (zinc transporter), member 7 (Slc30a7), mRNA."	"A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence IEA]; A membrane-bounded vesicle found in the cytoplasm of the cell [goid 16023] [evidence ISS]"	"The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of zinc (Zn) ions into, out of, within or between cells [goid 6829] [evidence IEA]; The directed movement of zinc (Zn) ions into, out of, within or between cells [goid 6829] [evidence ISS]"	Catalysis of the transfer of zinc (Zn) ions from one side of a membrane to the other [goid 5385] [evidence IEA]; Catalysis of the transfer of zinc (Zn) ions from one side of a membrane to the other [goid 5385] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of cation from one side of the membrane to the other [goid 8324] [evidence IEA]
		Rattus norvegicus	RefSeq	GI_62718676-S	ILMN_52966	LOC503390	XM_578928.1	XM_578928.1		503390	62718676	XM_578928.1	LOC503390	XP_578928.1	ILMN_1349784	2850348	S	876	GTATCCTTTAGTTTCCCGCTGACCGCACCAGCCGGGGCTGGTCTCAGGTA					"PREDICTED: Rattus norvegicus similar to Ac1147 (LOC503390), mRNA."
Transporter -> Other transporter	Intracellular protein traffic -> Other intracellular protein traffic;Immunity and defense -> Blood clotting	Rattus norvegicus	RefSeq	GI_21245095-S	ILMN_272380	MCFD2	NM_139253.1	NM_139253.1		246117	21245095	NM_139253.1	Mcfd2	NP_640346.1	ILMN_1369244	6550692	S	1417	GGAAGAGCAGTAGTAGCTGAAAGAGAAACAGCCATAGGTCGTACTTTGCG	6	-	10763791-10763840	6q12	"Rattus norvegicus multiple coagulation factor deficiency 2 (Mcfd2), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]"	"The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-) [goid 19752] [evidence IDA]"	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	Sdnsf	Sdnsf
Oxidoreductase -> Dehydrogenase	Lipid, fatty acid and steroid metabolism -> Fatty acid metabolism -> Acyl-CoA metabolism;Electron transport	Rattus norvegicus	RefSeq	GI_6978430-S	ILMN_300820	ACADL	NM_012819.1	NM_012819.1		25287	6978430	NM_012819.1	Acadl	NP_036951.1	ILMN_1355733	3450056	S	1194	CCCGATTGCAAAAGCCTACGTGGATGCTCGAGTTCAGCCGATCTACGGTG	9	-	65613338-65613376:65618657-65618667	9q32	"Rattus norvegicus acyl-Coenzyme A dehydrogenase, long-chain (Acadl), nuclear gene encoding mitochondrial protein, mRNA."	"A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]"	"The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]"	"Catalysis of the reaction: acyl-CoA + ETF = 2,3-dehydroacyl-CoA + reduced ETF [goid 4466] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]"	ACOADA; LCAD	ACOADA; LCAD
		Rattus norvegicus	RefSeq	GI_62666099-S	ILMN_58255	LOC499447	XM_574770.1	XM_574770.1		499447	62666099	XM_574770.1	LOC499447	XP_574770.1	ILMN_1354075	4050672	S	469	CGGGAGGTCTCAGTGGCAAGGATGAGACAGCACGGGACAACCTGTTATTG					"PREDICTED: Rattus norvegicus similar to hypothetical protein MGC67567 (LOC499447), mRNA."
Select calcium binding protein -> Calmodulin related protein	Signal transduction -> Intracellular signaling cascade -> Calcium mediated signaling;Cell cycle;Cell proliferation and differentiation	Rattus norvegicus	RefSeq	GI_62664019-S	ILMN_51668	CETN1	XM_344646.3	XM_344646.3		84592	109506287	XM_344646.3	Cetn1	XP_344647.1	ILMN_1352601	2850707	S	449	CAACGAGTTGGGGGAAAGCCTCACAGACGAGGAGCTGCAGGAAATGATCG	18	-	914108-914157	18p13	"PREDICTED: Rattus norvegicus centrin 1 (Cetn1), mRNA."	"A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; A cellular organelle, found close to the nucleus in many eukaryotic cells, consisting of a small cylinder with microtubular walls, 300-500 nm long and 150-250 nm in diameter. It contains nine short, parallel, peripheral microtubular fibrils, each fibril consisting of one complete microtubule fused to two incomplete microtubules. Cells usually have two centrioles, lying at right angles to each other. At division, each pair of centrioles generates another pair and the twin pairs form the pole of the mitotic spindle [goid 5814] [evidence IDA]; A 9+0 cilium that forms the portion of the axoneme traversing the boundary between the photoreceptor inner and outer segments [goid 32391] [evidence ISS]"	"Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence TAS]"	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with a complex of G-protein beta/gamma subunits [goid 31683] [evidence ISS]
Oxidoreductase -> Oxygenase;Oxidoreductase -> Hydroxylase	Coenzyme and prosthetic group metabolism -> Vitamin metabolism -> Vitamin biosynthesis	Rattus norvegicus	RefSeq	GI_12018319-S	ILMN_271918	BBOX1	NM_022629.1	NM_022629.1		64564	12018319	NM_022629.1	Bbox1	NP_072151.1	ILMN_1353895	5420136	S	1042	GGACGTCGCAGCTATGAAGCAGGAACTGAGATATCCCGCCATCTGGAAGG	3	-	95747807-95747856	3q33	"Rattus norvegicus butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1 (Bbox1), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"The chemical reactions and pathways resulting in the formation of carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 45329] [evidence TAS]; The chemical reactions and pathways resulting in the formation of carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 45329] [evidence ISS]; The chemical reactions and pathways resulting in the formation of carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane [goid 45329] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]"	"Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Catalysis of the reaction: 4-trimethylammoniobutanoate + 2-oxoglutarate + O2 = 3-hydroxy-4-trimethylammoniobutanoate + succinate + CO2 [goid 8336] [evidence TAS]; Catalysis of the reaction: 4-trimethylammoniobutanoate + 2-oxoglutarate + O2 = 3-hydroxy-4-trimethylammoniobutanoate + succinate + CO2 [goid 8336] [evidence ISS]; Catalysis of the reaction: 4-trimethylammoniobutanoate + 2-oxoglutarate + O2 = 3-hydroxy-4-trimethylammoniobutanoate + succinate + CO2 [goid 8336] [evidence IMP]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IEA]"	Bbh; Bbox	Bbh; Bbox
		Rattus norvegicus	RefSeq	GI_62718654-S	ILMN_51813	LOC302210	XM_217546.3	XM_217546.3		302210	62718654	XM_217546.3	LOC302210	XP_217546.3	ILMN_1357758	4810047	S	861	GGTCGTACTTTCACCTCGCCTCTCTGCAGCAAGTGTGTACTTTTGGAGGG					"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930555G01 (LOC302210), mRNA."
		Rattus norvegicus	RefSeq	GI_62638578-S	ILMN_56549	LOC499029	XM_579903.1	XM_579903.1		499029	62638578	XM_579903.1	LOC499029	XP_579903.1	ILMN_1369314	2760348	S	220	GTGGTAATGGCTCCCAAGCAAAGAATCTGAACCTTACAGCAGCCCCACCT					"PREDICTED: Rattus norvegicus LOC499029 (LOC499029), mRNA."
Ligase -> Ubiquitin-protein ligase	Protein metabolism and modification -> Proteolysis;Immunity and defense	Rattus norvegicus	RefSeq	GI_62662543-S	ILMN_281276	MARCH1_PREDICTED	XM_001071042.1	XM_001071042.1		361135	109504041	XM_001071042.1	March1_predicted	XP_001071042.1	ILMN_1370328	1230333	S	746	CGTGTAATGTGAACACGGAAGGCAAGGATGCTGTGGTTGTGCCTGTGCCA				16p14-p13	"PREDICTED: Rattus norvegicus membrane-associated ring finger (C3HC4) 1 (predicted) (March1_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62657224-S	ILMN_49864	TEX2	XM_221043.4	XM_221043.4		303611	109489187	XM_221043.4	Tex2	XP_221043.4	ILMN_1369672	5900647	S	3203	CTGCTAACTGTGGAAGTGCAGGAGTGTCGCGGGACCTTGGCGGTCAACAT	10	+	95993147-95993196	10q32.1	"PREDICTED: Rattus norvegicus testis expressed gene 2 (Tex2), mRNA."	"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]"	"Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The uptake and phosphorylation of specific carbohydrates from the extracellular environment; uptake and phosphorylation are coupled, making the PTS a link between the uptake and metabolism of sugars; phosphoenolpyruvate is the original phosphate donor; phosphoenolpyruvate passes the phosphate via a signal transduction pathway, to enzyme 1 (E1), which in turn passes it on to the histidine protein, HPr; the next step in the system involves sugar-specific membrane-bound complex, enzyme 2 (EII), which transports the sugar into the cell; it includes the sugar permease, which catalyzes the transport reactions; EII is usually divided into three different domains, EIIA, EIIB, and EIIC [goid 9401] [evidence IEA]"	"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in) [goid 5351] [evidence IEA]"
		Rattus norvegicus	Unigene	Rn.37544	ILMN_160560	RN.37544	Rn.37544		Rn.37544		3018630	AA891751			ILMN_1530219	5130736	S	509	AATTGAAGAAATATTCTCCTTTTCCAAGTGGCATAACATACAAAATGTAG					"EST195554 Normalized rat kidney, Bento Soares Rattus sp. cDNA clone RKIAG34 3' end, mRNA"
Ion channel -> Voltage-gated ion channel -> Voltage-gated potassium channel	Transport -> Ion transport -> Cation transport	Rattus norvegicus	RefSeq	GI_13928821-S	ILMN_289263	KCNJ10	NM_031602.1	NM_031602.1		29718	13928821	NM_031602.1	Kcnj10	NP_113790.1	ILMN_1357099	840577	S	1033	GAGATCCTCTGGGGCTACGAGTTCACACCTGCTATCTCACTGTCAGCCAG	13	+	88370201-88370250	13q24	"Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 10 (Kcnj10), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence ISS]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA];  [goid 5242] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence ISS]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]"
Select calcium binding protein -> Calmodulin related protein	Signal transduction -> Intracellular signaling cascade	Rattus norvegicus	RefSeq	GI_6981497-S	ILMN_283542	S100B	NM_013191.1	NM_013191.1		25742	6981497	NM_013191.1	S100b	NP_037323.1	ILMN_1373043	780348	S	1136	GGACACGGACAGAGGAGGGCACTGGAGAGAGTGTCAGGTCTTTTTCTAGC	20	-	12791738-12791787	20p12	"Rattus norvegicus S100 calcium binding protein B (S100b), mRNA."	"Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]"	"The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence ISS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IEA]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence ISS]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence IEA]"	"Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with S100 beta protein. S100 is a small calcium and zinc binding protein produced in astrocytes that is implicated in Alzheimer's disease, Down Syndrome and ALS [goid 48154] [evidence ISS]; Interacting selectively with S100 beta protein. S100 is a small calcium and zinc binding protein produced in astrocytes that is implicated in Alzheimer's disease, Down Syndrome and ALS [goid 48154] [evidence IEA]; Interacting selectively with tau protein. tau is a microtubule-associated protein, implicated in Alzheimer's disease, Down Syndrome and ALS [goid 48156] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence IEA]"	MGC93559; S100P	MGC93559; S100P
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47576066-S	ILMN_283954	OLR1418	NM_001000008.1	NM_001000008.1		287313	47576066	NM_001000008.1	Olr1418	NP_001000008.1	ILMN_1354505	6590463	S	500	GTGGGTCACGGGAGATCTATCACTTCTACTGTGAGGTTCTGGCTGTGACA	10	-	44254306-44254355	10q22	"Rattus norvegicus olfactory receptor 1418 (Olr1418), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr10-44268478-44267534_ORF; Olr1418	ratchr10-44268478-44267534_ORF; Olr1418
		Rattus norvegicus	RefSeq	GI_62663756-S	ILMN_66906	IDI2_PREDICTED	XM_225508.3	XM_225508.3		291275	62663756	XM_225508.3	Idi2_predicted	XP_225508.2	ILMN_1363470	1780403	S	681	TGAGGAACCGGAAATAAGACACTGGCTGTGAGGATGCCCCAGTTCAGCAC					"PREDICTED: Rattus norvegicus isopentenyl-diphosphate delta isomerase 2 (predicted) (Idi2_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62718770-S	ILMN_60522	LOC501470	XM_576880.1	XM_576880.1		501470	62718770	XM_576880.1	LOC501470	XP_576880.1	ILMN_1370234	1240050	S	640	GAACATCTGTGACCCCAGTGCCACGCAACAGCAGGTAGGGTTAGGCCTCA					"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930555G01 (LOC501470), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62640897-S	ILMN_277603	RGD1308371_PREDICTED	XM_001062219.1	XM_001062219.1		293114	109462408	XM_001062219.1	RGD1308371_predicted	XP_001062219.1	ILMN_1363646	4810100	S	448	CACTGATCGGCGTAGCCTGTGGGGTCTCCTATCCCAGTGCTTTGGCTTTT				1q32	"PREDICTED: Rattus norvegicus hypothetical LOC293114 (predicted) (RGD1308371_predicted), mRNA."
Nucleic acid binding -> DNA-directed RNA polymerase	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_62656493-S	ILMN_52552	MED31_PREDICTED	XM_213393.4	XM_213393.4		287475	109488487	XM_213393.4	Med31_predicted	XP_213393.2	ILMN_1374051	5700286	S	971	GCAGCAGCAGAATACCACAGCAGGAAAATGAAGAGCTGGCAACAGCAGGC	10	-	59104388-59104407:59104408-59104437	10q24	"PREDICTED: Rattus norvegicus mediator of RNA polymerase II transcription, subunit 31 homolog (yeast) (predicted) (Med31_predicted), mRNA."
Select calcium binding protein	Signal transduction -> Intracellular signaling cascade -> Calcium mediated signaling	Rattus norvegicus	RefSeq	GI_8394170-S	ILMN_290310	RCN2	NM_017132.1	NM_017132.1		29218	8394170	NM_017132.1	Rcn2	NP_058828.1	ILMN_1362290	2260138	S	1506	GTAGCACGTGATGAAGCTGTCAGTTTTCGTTCTTGTACTCGTAGACTTCC	8	+	59659374-59659423	8q24	"Rattus norvegicus reticulocalbin 2, EF-hand calcium binding domain (Rcn2), mRNA."	"The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]"		Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]
Transporter -> Other transporter	Phosphate metabolism -> Phosphate transport;Transport -> Phosphate transport;Transport -> Ion transport -> Cation transport;Transport -> Extracellular transport and import	Rattus norvegicus	RefSeq	GI_24025620-S	ILMN_302599	SLC17A3	NM_153622.1	NM_153622.1		266730	24025620	NM_153622.1	Slc17a3	NP_705886.1	ILMN_1373230	2510347	S	2119	GCATGGCAAAGGCCAAGCTATGAGCAACAAGGGTGGGGTTCAGTCCTGAG				17p11	"Rattus norvegicus solute carrier family 17 (sodium phosphate), member 3 (Slc17a3), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence TAS]; The directed movement of phosphate into, out of, within or between cells [goid 6817] [evidence TAS]"	"Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + phosphate(out) = Na+(in) + phosphate(in) [goid 5436] [evidence TAS]"	Rnpt4	Rnpt4
Receptor;Extracellular matrix	Signal transduction -> Cell surface receptor mediated signal transduction -> Other receptor mediated signaling pathway;Developmental processes	Rattus norvegicus	RefSeq	GI_62662269-S	ILMN_262728	RGD1564668_PREDICTED	XM_001065544.1	XM_001065544.1		498594	109503853	XM_001065544.1	RGD1564668_predicted	XP_001065544.1	ILMN_1359828	4670129	S	1346	CAGGGCCAGTGTGTGGTCTTTGTGACAGGCAAAGGCAGTGGTGAGCTGGA				16p14	"PREDICTED: Rattus norvegicus similar to leucine rich repeat containing 22 (predicted) (RGD1564668_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62657754-S	ILMN_69274	RGD1565472_PREDICTED	XM_573266.2	XM_573266.2		498067	109493015	XM_573266.2	RGD1565472_predicted	XP_573266.1	ILMN_1366083	6130484	S	2260	TCTTCAGACCCCTCTTTGAGGCAAGAAAGGTTGCCAGGTGATGCCTGAGC	11	+	38545367-38545416	11q12	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310003P10 (predicted) (RGD1565472_predicted), mRNA."
Ligase -> Ubiquitin-protein ligase	Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_62645405-S	ILMN_263604	RGD1560612_PREDICTED	XM_001070000.1	XM_001070000.1		362166	109470258	XM_001070000.1	RGD1560612_predicted	XP_001070000.1	ILMN_1365969	4150278	S	2814	TTCCTTTCTGTTTTGTTGGGTGGGGAGCAGGGACGGGCAGAGGGAGGAGA				3q24	"PREDICTED: Rattus norvegicus similar to PHF21A protein (predicted) (RGD1560612_predicted), mRNA."
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_62660188-S	ILMN_53155	MRPL1_PREDICTED	XM_214008.4	XM_214008.4		289491	109499499	XM_214008.4	Mrpl1_predicted	XP_214008.2	ILMN_1363224	2850324	S	923	AGACTGACTCGCTCTTACCCAAGAAGCTGGAAACGCAGAAGCTGCCTAGA	14	-	14813637-14813686	14p22	"PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L1 (predicted) (Mrpl1_predicted), mRNA."
Transporter;Transfer/carrier protein -> Apolipoprotein;Hydrolase -> Lipase	Lipid, fatty acid and steroid metabolism -> Lipid and fatty acid transport;Transport -> Lipid and fatty acid transport;Lipid, fatty acid and steroid metabolism -> Lipid metabolism	Rattus norvegicus	RefSeq	GI_62639111-S	ILMN_271816	APOC2_PREDICTED	XM_001076000.1	XM_001076000.1		292697	109461384	XM_001076000.1	Apoc2_predicted	XP_001076000.1	ILMN_1357481	940601	S	184	GGCCGCCGGAGAACTATACCAGAAGACATACCTGACCAGCGTGGACGAGA				1q21	"PREDICTED: Rattus norvegicus apolipoprotein C-II (predicted) (Apoc2_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62717904-S	ILMN_54708	LOC501251	XM_576670.1	XM_576670.1		501251	62717904	XM_576670.1	LOC501251	XP_576670.1	ILMN_1365966	6020215	S	934	CCTGGGGCAGCTGGAAGCTCCTGAGGCTAAGGCCACAGTTTGGTCACGCT					"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930555G01 (LOC501251), mRNA."	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		"The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]"
Nucleic acid binding -> Double-stranded DNA binding protein	Cell cycle -> Cell cycle control;Cell proliferation and differentiation	Rattus norvegicus	RefSeq	GI_56676353-S	ILMN_299382	NDN	NM_001008558.1	NM_001008558.1		308690	56676353	NM_001008558.1	Ndn	NP_001008558.1	ILMN_1358752	5910725	S	1363	GGGACTGATGGTCCGTATCGACAAAGAAGGCCCTGGAGAGTTAGCAGGAC	1	+	116595965-116596014	1q22	"Rattus norvegicus necdin homolog (mouse) (Ndn), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]"	"The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence IEA]; The characteristic movement of immature neurons from germinal zones to specific positions where they will reside as they mature [goid 1764] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells [goid 7409] [evidence ISS]; The collection of axons into a bundle of rods, known as a fascicle [goid 7413] [evidence IEA]; The collection of axons into a bundle of rods, known as a fascicle [goid 7413] [evidence ISS]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IEA]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence ISS]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence IEA]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence ISS]; The orderly movement of glial cells, non-neuronal cells that provide support and nutrition, maintain homeostasis, form myelin, and participate in signal transmission in the nervous system [goid 8347] [evidence IEA]; The orderly movement of glial cells, non-neuronal cells that provide support and nutrition, maintain homeostasis, form myelin, and participate in signal transmission in the nervous system [goid 8347] [evidence ISS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IEA]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence ISS]; The series of molecular signals generated as a consequence of the nerve growth factor receptor binding to one of its physiological ligands [goid 48011] [evidence IEA]; The series of molecular signals generated as a consequence of the nerve growth factor receptor binding to one of its physiological ligands [goid 48011] [evidence NAS]; The series of molecular signals generated as a consequence of the nerve growth factor receptor binding to one of its physiological ligands [goid 48011] [evidence ISS]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence IEA]; The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 48666] [evidence ISS]; Long distance growth of a single axon process involved in cellular development [goid 48676] [evidence IEA]; Long distance growth of a single axon process involved in cellular development [goid 48676] [evidence ISS]"	"Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IPI]; Interacting selectively with the microtubule constituent protein gamma-tubulin [goid 43015] [evidence IEA]; Interacting selectively with the microtubule constituent protein gamma-tubulin [goid 43015] [evidence ISS]"	MGC105768	MGC105768
Oxidoreductase -> Reductase	Amino acid metabolism -> Amino acid biosynthesis	Rattus norvegicus	RefSeq	GI_62648914-S	ILMN_271865	LOC683694	XM_001065009.1	XM_001065009.1		683694	109476347	XM_001065009.1	LOC683694	XP_001065009.1	ILMN_1370903	6400273	S	1005	GCCTAAGAGGGGAGCCAATGCCCAGTGAACTCAAGCTGTAGCCAGATGGG					"PREDICTED: Rattus norvegicus similar to glyoxylate reductase/hydroxypyruvate reductase (LOC683694), mRNA."
		Rattus norvegicus	RefSeq	GI_62653888	ILMN_279954	RGD1561996_PREDICTED	XR_007349.1	XR_007349.1		300821	109484941	XR_007349.1	RGD1561996_predicted		ILMN_1650860	2350722	S	241	CCTGTGACCCAAGAAAACCAGAGCCATGCCGGCTCATGAAGAGAAGCTGG				8q24	"PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L35 (predicted) (RGD1561996_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_56090240-S	ILMN_285558	THTPA	NM_001007682.1	NM_001007682.1		305889	56090240	NM_001007682.1	Thtpa	NP_001007683.1	ILMN_1351670	2680026	S	2135	GGGGGCTGGTTAGGCCTAGACTGGTTTCGGGTGCAAGCACAGTAAGGTAA	15	+	33204691-33204740	15p13	"Rattus norvegicus thiamine triphosphatase (Thtpa), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"The chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 6171] [evidence IEA]; The chemical reactions and pathways involving thiamin (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver [goid 6772] [evidence IEA]; The process of removing one or more phosphoric (ester or anhydride) residues from a molecule [goid 16311] [evidence ISS]; The process of removing one or more phosphoric (ester or anhydride) residues from a molecule [goid 16311] [evidence IEA]"	"Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate [goid 4016] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: thiamin triphosphate + H2O = thiamin diphosphate + phosphate [goid 50333] [evidence ISS]"	MGC94155	MGC94155
Select regulatory molecule -> G-protein modulator -> Guanyl-nucleotide exchange factor	Signal transduction -> Intracellular signaling cascade -> Other intracellular signaling cascade	Rattus norvegicus	RefSeq	GI_62656623-S	ILMN_283653	ABR_PREDICTED	XM_001080643.1	XM_001080643.1		287537	109491345	XM_001080643.1	Abr_predicted	XP_001080643.1	ILMN_1355402	6840736	S	5242	GGAATCCGGGTATGCCTGTACTTGCTTGTGCAACGACTGAGGGCTGCCAG				10q26	"PREDICTED: Rattus norvegicus active BCR-related gene (predicted) (Abr_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47577974	ILMN_286207	OLR1106	NM_001000423.1	NM_001000423.1		300199	47577974	NM_001000423.1	Olr1106	NP_001000423.1	ILMN_1650287	1190112	S	740	GCTTCTTCTACGGCTCAGGGTTACTCCGTTACCTCATGCCAAATTCCGGG	7	-	137109360-137109409	7q36	"Rattus norvegicus olfactory receptor 1106 (Olr1106), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1106; ratchr7-137186586-137185657_ORF	Olr1106; ratchr7-137186586-137185657_ORF
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62078710-S	ILMN_294355	TMEM175	NM_001013991.1	NM_001013991.1		305623	62078710	NM_001013991.1	Tmem175	NP_001014013.1	ILMN_1374099	780020	S	1378	GGAACATGCTTTCATGTTTGCCAAGCTCGCACTGTACCCCTGTGCCAGCC	14	-	1614912-1614961	14p22	"Rattus norvegicus transmembrane protein 175 (Tmem175), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"
Receptor -> Other receptor	Developmental processes -> Gametogenesis -> Oogenesis	Rattus norvegicus	RefSeq	GI_62648253-S	ILMN_278789	LRP6_PREDICTED	XM_001071349.1	XM_001071349.1		312781	109474380	XM_001071349.1	Lrp6_predicted	XP_001071349.1	ILMN_1349678	50184	S	5450	CTTGGAAGGAGCCAAATTGCCTTCAGGGTAGCTAACATTTGAGGGCCCCG				4q43	"PREDICTED: Rattus norvegicus low density lipoprotein receptor-related protein 6 (predicted) (Lrp6_predicted), mRNA."
Cell adhesion molecule -> Cadherin;Cell junction protein -> Other cell junction protein	Signal transduction -> Cell communication -> Cell adhesion-mediated signaling;Cell adhesion	Rattus norvegicus	RefSeq	GI_62664092-S	ILMN_269160	DSG2_PREDICTED	XM_001054396.1	XM_001054396.1		307562	109506991	XM_001054396.1	Dsg2_predicted	XP_001054396.1	ILMN_1369499	6550673	S	1299	CATGCGGATCAAAGTGACCGACGCGGATGAAGTGGGCTCGGATAACTGGC				18p12	"PREDICTED: Rattus norvegicus desmoglein 2 (predicted) (Dsg2_predicted), mRNA."
Cell adhesion molecule -> Cadherin;Cell junction protein -> Other cell junction protein	Signal transduction -> Cell communication -> Cell adhesion-mediated signaling;Cell adhesion	Rattus norvegicus	RefSeq	GI_62664094-S	ILMN_269160	DSG2_PREDICTED	XM_001054396.1	XM_001054396.1		307562	109506991	XM_001054396.1	Dsg2_predicted	XP_001054396.1	ILMN_1358157	6220717	S	3714	AGAGGAGTCTGGTCCTCCCAACTCTACTGTAACCACGTCTTCCACCAGGG				18p12	"PREDICTED: Rattus norvegicus desmoglein 2 (predicted) (Dsg2_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62665878-S	ILMN_70327	LOC361828	XM_342122.2	XM_342122.2		361828	62665878	XM_342122.2	LOC361828	XP_342123.2	ILMN_1351400	4230176	S	5773	CAGCCCTGGCATGTGAGAGACCCTGTCCCCTAAGAAGGTGATACTTGGAG				20p12	"PREDICTED: Rattus norvegicus similar to mKIAA0376 protein (predicted) (LOC361828), mRNA."
		Rattus norvegicus	RefSeq	GI_62638806-S	ILMN_67648	LOC361490	XM_341769.2	XM_341769.2		361490	62638806	XM_341769.2	LOC361490	XP_341770.2	ILMN_1366856	6510019	S	1086	GACCTCAGGGCAGTCATCAGTCACCAGAACAGTGAAGGGAACCACAACCC					"PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ32191 (LOC361490), mRNA."
Miscellaneous function -> Other miscellaneous function protein	Miscellaneous	Rattus norvegicus	RefSeq	GI_62717819-S	ILMN_290820	PROS1	NM_031086.1	NM_031086.1		81750	71894706	NM_031086.1	Pros1	NP_112348.1	ILMN_1369010	940441	S	2009	AGCGGCTGCATGGAAGTGAACATCAACGGGGTACAGTTGGATCTGGATGA	Un|NW_047841.1	+	1268319-1268368		"Rattus norvegicus protein S (alpha) (Pros1), mRNA."	"That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]"	"A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of phagocytosis [goid 50766] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of coagulation [goid 50819] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of coagulation [goid 50819] [evidence TAS]"	Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IDA]
Nucleic acid binding -> mRNA processing factor -> mRNA splicing factor	Nucleoside, nucleotide and nucleic acid metabolism -> Pre-mRNA processing -> mRNA splicing	Rattus norvegicus	RefSeq	GI_56605689-S	ILMN_276006	SNRPA	NM_001008303.1	NM_001008303.1		292729	56605689	NM_001008303.1	Snrpa	NP_001008304.1	ILMN_1364755	940594	S	1072	CCCAGGGTCTTCCCAGACATTGCACCTGGCGCTGTTGGGTTGTGATTAAA	1	-	82265684-82265733	1q21	"Rattus norvegicus small nuclear ribonucleoprotein polypeptide A (Snrpa), mRNA."	"A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence ISS]"	"The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]"	MGC105915	MGC105915
Lyase -> Decarboxylase	Coenzyme and prosthetic group metabolism -> Porphyrin metabolism	Rattus norvegicus	RefSeq	GI_62649477-S	ILMN_288915	UROD	XM_001067008.1	XM_001067008.1		29421	109476999	XM_001067008.1	Urod	XP_001067008.1	ILMN_1374563	4850180	S	1075	GGGCATGGGCTTTACCCTGACATGGACCCAGAACACGTAGGAGCCTTTGT				5q36	"PREDICTED: Rattus norvegicus uroporphyrinogen decarboxylase (Urod), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]"	"The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group [goid 6779] [evidence IDA]; The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group [goid 6779] [evidence IEA]; The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors [goid 6783] [evidence IC ]; The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors [goid 6783] [evidence IEA]; The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors [goid 6783] [evidence NAS]; The chemical reactions and pathways involving heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 42168] [evidence ISS]; The chemical reactions and pathways involving uroporphyrinogen III, a precursor for synthesis of vitamin B12, chlorophyll, and heme in organisms that produce these compounds [goid 46502] [evidence IDA]"	"Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2 [goid 4853] [evidence IDA]; Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2 [goid 4853] [evidence IEA]; Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2 [goid 4853] [evidence NAS]; Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2 [goid 4853] [evidence ISS]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2 [goid 4853] [evidence IEA]"
		Rattus norvegicus	RefSeq	GI_62654890-S	ILMN_57497	LOC367238	XM_346031.2	XM_346031.2		367238	62654890	XM_346031.2	LOC367238	XP_346032.2	ILMN_1370989	4610152	S	53	CTCTACACAACGAGGAGGTGAGAGTCAAGGAGGTCAGCTAGTGTCAGCTT					"PREDICTED: Rattus norvegicus similar to 60S acidic ribosomal protein P1 (LOC367238), mRNA."
Chaperone -> Other chaperones	Protein metabolism and modification -> Protein folding	Rattus norvegicus	RefSeq	GI_13324703-S	ILMN_61667	GRPEL1	NM_024487.2	NM_024487.2		79563	67972657	NM_024487.2	Grpel1	NP_077813.1	ILMN_1364021	1170368	S	638	TTTGGTGGGGGTGGTGAAGGACGCTTAGCTCTCTCCCTCAAGGCTCTGGA	14	-	79873461-79873483:79873484-79873510	14q21	"Rattus norvegicus GrpE-like 1, mitochondrial (Grpel1), mRNA."	"A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]"	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	"Stimulates the hydrolysis and exchange of adenyl nucleotides by other proteins [goid 774] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence IEA]; Interacting selectively with an unfolded protein [goid 51082] [evidence ISS]; Interacting selectively with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport [goid 51087] [evidence IEA]"	GrpE#1; GrpE1	GrpE#1; GrpE1
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62658590-S	ILMN_281100	RGD1562319_PREDICTED	XM_001075805.1	XM_001075805.1		498165	109496769	XM_001075805.1	RGD1562319_predicted	XP_001075805.1	ILMN_1364872	2510050	S	1605	GGGTGTGGCCGTCTCAAATGAGGCCGTCTCAAATCATCCATCTGTGATGG				12q11	"PREDICTED: Rattus norvegicus similar to family with sequence similarity 55, member C (predicted) (RGD1562319_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_27501443-S	ILMN_274038	NQO1	NM_017000.2	NM_017000.2		24314	27501443	NM_017000.2	Nqo1	NP_058696.2	ILMN_2039396	10411	S	1336	TGCAGTGACTGACAAGCCTCGGGGGATTGCTCTCCAGCTCTTCTCTGCCT	19	-	37251202-37251251	19q12	"Rattus norvegicus NAD(P)H dehydrogenase, quinone 1 (Nqo1), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; Any process that stops or reduces the activity of an enzyme [goid 43086] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptosis [goid 43525] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]"	"Catalysis of the reaction: NAD(P)H + H+ + a quinone = NAD(P)(+) + a hydroquinone [goid 3955] [evidence IDA]; Catalysis of the reaction: NAD(P)H + H+ + a quinone = NAD(P)(+) + a hydroquinone [goid 3955] [evidence ISS]; Catalysis of the reaction: NAD(P)H + H+ + a quinone = NAD(P)(+) + a hydroquinone [goid 3955] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed [goid 50662] [evidence IEA]"	Dia4; MGC93075	Dia4; MGC93075
Select regulatory molecule -> G-protein modulator -> Other G-protein modulator;Select calcium binding protein;Membrane traffic protein	Intracellular protein traffic -> Endocytosis;Neuronal activities -> Synaptic transmission -> Neurotransmitter release	Rattus norvegicus	RefSeq	GI_62638957-S	ILMN_301179	EHD2	NM_001024897.1	NM_001024897.1		361512	67846073	NM_001024897.1	Ehd2	NP_001020068.1	ILMN_1372744	1660593	S	1462	TAGCGCCTGCTGATGGCAAGCTGAGTGGCTCTAAGGCCAAAACCTGGATG	1	-	76292695-76292744	1q21	"Rattus norvegicus EH-domain containing 2 (Ehd2), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]"	"The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane [goid 30866] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane [goid 30866] [evidence ISS]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]"	MGEPS	MGEPS
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62646241-S	ILMN_52190	RGD1305725_PREDICTED	XM_342561.3	XM_342561.3		362255	109469142	XM_342561.3	RGD1305725_predicted	XP_342562.3	ILMN_1359955	4060066	S	733	AGCCTCTCCTCGCTGGTGGTCAAGGTGGTGGGCAGCAACATCTCCCACAA	3	+	148625146-148625160:148651143-148651177	3q42	"PREDICTED: Rattus norvegicus similar to chromosome 20 open reading frame 102 (predicted) (RGD1305725_predicted), mRNA."
Ion channel -> Voltage-gated ion channel -> Voltage-gated potassium channel	Signal transduction -> Cell communication;Transport -> Ion transport -> Cation transport	Rattus norvegicus	RefSeq	GI_19424323-S	ILMN_297204	KCNH5	NM_133610.1	NM_133610.1		171146	19424323	NM_133610.1	Kcnh5	NP_598294.1	ILMN_1358085	1450594	S	2894	GATAAAGCTGGTGAGGCCCGAAGTCCTCTAGAACACAGTCCCAGCCAGGC	6	-	97484750-97484799	6q24	"Rattus norvegicus potassium voltage-gated channel, subfamily H (eag-related), member 5 (Kcnh5), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins [goid 160] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]"	"Catalysis of the phosphorylation of a specific transcription regulator in response to the presence of a particular signal substance outside the cell [goid 155] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]"	Eag2	Eag2
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62660701-S	ILMN_278200	RGD1560636_PREDICTED	XM_001063601.1	XM_001063601.1		305467	109500811	XM_001063601.1	RGD1560636_predicted	XP_001063601.1	ILMN_1357740	4120441	S	3770	TGGGCTTGCCCCTAGGGTAAGGATACCCAACCCTCAACAACAAAACACAA				14q21	"PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1560636_predicted), mRNA."
Transcription factor -> Other transcription factor;Nucleic acid binding	Carbohydrate metabolism;Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Signal transduction -> Cell surface receptor mediated signal transduction -> Other receptor mediated signaling pathway;Signal transduction -> Cell communication;Sensory perception -> Vision;Developmental processes -> Embryogenesis;Developmental processes -> Anterior/posterior patterning;Developmental processes -> Segment specification;Developmental processes -> Ectoderm development -> Neurogenesis;Developmental processes -> Mesoderm development;Cell cycle -> Cell cycle control;Cell proliferation and differentiation;Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_62648380-S	ILMN_65849	RGD1565101_PREDICTED	XM_578387.2	XM_578387.2		502886	109472539	XM_578387.2	RGD1565101_predicted	XP_578387.2	ILMN_1360212	5340017	S	2625	GGCCCAGCACCAATGTACCCAATCTCCACCCAAGACTCAGCAGGATACAG	4	+	159316279-159316328	4q42	"PREDICTED: Rattus norvegicus similar to fork head transcription factor Fhx (predicted) (RGD1565101_predicted), mRNA."
Transporter -> Amino acid transporter	Amino acid metabolism -> Amino acid transport;Transport -> Amino acid transport;Neuronal activities -> Synaptic transmission	Rattus norvegicus	RefSeq	GI_42627862-S	ILMN_271468	SLC6A5	NM_203334.1	NM_203334.1		171148	42627862	NM_203334.1	Slc6a5	NP_976079.1	ILMN_1374850	4540139	S	6593	TATGCTCCGTCACTAGGGTGCTGTTTCGATGGCAACTGGGAACTGCCCTG	1	+	99793051-99793100	1q22	"Rattus norvegicus solute carrier family 6 (neurotransmitter transporter, glycine), member 5 (Slc6a5), mRNA."	"Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"	"The directed movement of glycine, aminoethanoic acid, into, out of, within or between cells [goid 15816] [evidence IDA]; The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]"	Catalysis of the transfer of glycine from one side of a membrane to the other. Glycine is aminoethanoic acid [goid 15187] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: neurotransmitter(out) + Na+(out) = neurotransmitter(in) + Na+(in) [goid 5328] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]	GLYT2	GLYT2
Nucleic acid binding;Synthase and synthetase -> Synthetase -> Aminoacyl-tRNA synthetase;Ligase	Protein metabolism and modification -> Amino acid activation	Rattus norvegicus	RefSeq	GI_62650143-S	ILMN_271106	LRRC47_PREDICTED	XM_001076460.1	XM_001076460.1		362672	109477766	XM_001076460.1	Lrrc47_predicted	XP_001076460.1	ILMN_1360424	3390292	S	1669	AGGTCCGAGTGGTGGACCTGGAAGGCAGCTTGAAAGTGGTGTACCCATCC				5q36	"PREDICTED: Rattus norvegicus leucine rich repeat containing 47 (predicted) (Lrrc47_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62641466-S	ILMN_282274	CTF2_PREDICTED	XM_001080300.1	XM_001080300.1		293515	109462938	XM_001080300.1	Ctf2_predicted	XP_001080300.1	ILMN_1355944	4480601	S	478	ACTCTGGGTATAGTCCCTTTCGGGGCCTCAGCCTTTGAGAGGAAATGCCG				1q36	"PREDICTED: Rattus norvegicus cardiotrophin 2 (predicted) (Ctf2_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62638283	ILMN_284197	RGD1559424_PREDICTED	XR_009046.1	XR_009046.1		292456	109514390	XR_009046.1	RGD1559424_predicted		ILMN_1650197	5050687	S	336	TGCCACCAAAGTGCAGAAATGTTTGACCCAGTGGATAGACCTATTGGGCC				1p13	"PREDICTED: Rattus norvegicus similar to Retinoic acid early inducible protein 1 beta precursor (RAE-1beta) (predicted) (RGD1559424_predicted), mRNA."
Hydrolase -> Phosphodiesterase	Nucleoside, nucleotide and nucleic acid metabolism -> Metabolism of cyclic nucleotides;Signal transduction	Rattus norvegicus	RefSeq	GI_40538864-S	ILMN_276608	PDE8B	NM_199268.1	NM_199268.1		309962	40538864	NM_199268.1	Pde8b	NP_954889.1	ILMN_1348973	5420433	S	2224	CACACCTGCCAGCCCTGATGCAACACCTGGCCGACAACTATAAACACTGG	2	-	25352877-25352926	2q12	"Rattus norvegicus phosphodiesterase 8B (Pde8b), mRNA."		"A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins [goid 160] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]"	"Alters the level of transcription of target genes, usually by binding to a transcription factor, when phosphorylated by a sensor that detects the presence of a particular signal substance outside the cell [goid 156] [evidence IEA]; Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate [goid 4114] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]"	RNPDE8B	RNPDE8B
Select regulatory molecule -> G-protein modulator -> Guanyl-nucleotide exchange factor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Signal transduction -> Cell surface receptor mediated signal transduction -> Receptor protein tyrosine kinase signaling pathway	Rattus norvegicus	RefSeq	GI_27719656-S	ILMN_272831	RGL3_PREDICTED	XM_001077564.1	XM_001077564.1		300444	109484377	XM_001077564.1	Rgl3_predicted	XP_001077564.1	ILMN_2040657	6290382	S	2034	CTATCGGAGCATCTTGCTTACTTGTCAGGATAAAGCCCCCAGCGTGGTGC				8q13	"PREDICTED: Rattus norvegicus ral guanine nucleotide dissociation stimulator-like 3 (predicted) (Rgl3_predicted), mRNA."
Nucleic acid binding -> Helicase -> RNA helicase	Nucleoside, nucleotide and nucleic acid metabolism -> Pre-mRNA processing -> mRNA splicing	Rattus norvegicus	RefSeq	GI_61557429-S	ILMN_275365	DHX30	NM_001013249.1	NM_001013249.1		367172	61557429	NM_001013249.1	Dhx30	NP_001013267.1	ILMN_1357694	2470528	S	3559	TGATTCACGAACTGTGCGGTTGCTAAGGGAGCTTCGGCGGGCCCTAGGAA	8	-	114438607-114438656	8q32	"Rattus norvegicus DEAH (Asp-Glu-Ala-His) box polypeptide 30 (Dhx30), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]"		"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with double-stranded RNA [goid 3725] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]"	MGC109411	MGC109411
		Rattus norvegicus	RefSeq	GI_62661282-S	ILMN_50386	LOC497702	XM_579713.1	XM_579713.1		497702	62661282	XM_579713.1	LOC497702	XP_579713.1	ILMN_1357998	3990092	S	794	TTCAGCCTGTAGTCTGCTGGCTCTGTTGTCCTGGGGAGGAGTGAGGCAGA					"PREDICTED: Rattus norvegicus hypothetical gene supported by NM_178103 (LOC497702), mRNA."
Transcription factor -> Zinc finger transcription factor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_62665926-S	ILMN_264357	JMJD1C	XM_001080424.1	XM_001080424.1		171120	109510023	XM_001080424.1	Jmjd1c	XP_001080424.1	ILMN_1355515	520056	S	547	CCTAGCCAGACTCAGGGATCAAAGAGCAGACAGATTCAGTGGCCTGCGCT				20p11	"PREDICTED: Rattus norvegicus jumonji domain containing 1C (Jmjd1c), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]"	"Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]"
Transcription factor -> Zinc finger transcription factor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_62665924-S	ILMN_264357	JMJD1C	XM_001080424.1	XM_001080424.1		171120	109510023	XM_001080424.1	Jmjd1c	XP_001080424.1	ILMN_1354357	1690041	S	7561	AGAGCCTGCACTCTGGTTCAGTTCCTTGGAGATGCCATTGTCCTGCCAGC				20p11	"PREDICTED: Rattus norvegicus jumonji domain containing 1C (Jmjd1c), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure [goid 16568] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]"	"Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor [goid 16702] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_38454319-S	ILMN_296633	HRPAP20	NM_198783.1	NM_198783.1		362495	38454319	NM_198783.1	Hrpap20	NP_942078.1	ILMN_1352329	3710093	S	1741	GCATGGTGATGGAGGGAGGCAGAGTAACAGCGAAGAGGGGAGATGAATGG	5	+	39944647-39944696	5q21	"Rattus norvegicus hormone-regulated proliferation associated protein 20 (Hrpap20), mRNA."	"A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]"	A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IMP]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IMP]	"Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]"
		Rattus norvegicus	RefSeq	GI_62656841-S	ILMN_48562	LOC363666	XM_343955.2	XM_343955.2		363666	62656841	XM_343955.2	LOC363666	XP_343956.2	ILMN_1360456	6380128	S	1491	CTCTCTGAAGGTGTTTATACTCAGCATCTGTCTCGGGCCTGCGGCCTGGC					"PREDICTED: Rattus norvegicus similar to hypothetical protein 4932411E22 (LOC363666), mRNA."
		Rattus norvegicus	RefSeq	GI_62652159-S	ILMN_55197	LOC366873	XM_345816.2	XM_345816.2		366873	62652159	XM_345816.2	LOC366873	XP_345817.2	ILMN_1354117	2350133	S	1036	GATTTCAGAGCCTTGTATCAGCTCTCTTCAACGGCCACCAGCTCTTGGAC					"PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)  (EC 1.2.1.12) - mouse (LOC366873), mRNA."
Ion channel -> Voltage-gated ion channel -> Voltage-gated potassium channel	Transport -> Ion transport -> Cation transport	Rattus norvegicus	RefSeq	GI_19923708-S	ILMN_275902	KCNK10	NM_023096.2	NM_023096.2		65272	19923708	NM_023096.2	Kcnk10	NP_075584.1	ILMN_2039953	5290598	S	2974	GACACACCGAGGAGGACCATGGCATCTTTCCATCTCAGGGCTTCCTGTCC	6	-	122600189-122600238	6q32	"Rattus norvegicus potassium channel, subfamily K, member 10 (Kcnk10), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]"	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IDA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	TREK2	TREK2
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_56090408-S	ILMN_283091	RGD1359127	NM_001007657.1	NM_001007657.1		299612	56090408	NM_001007657.1	RGD1359127	NP_001007658.1	ILMN_1371628	4210008	S	1467	GGAGCCCCGAATCGCCTTCTCGGGTTGGACAACAGCTGCAGAAGAAGGAA	7	+	10903572-10903621	7q11	"Rattus norvegicus similar to RIKEN cDNA 2310011J03 (RGD1359127), mRNA."				MGC94198	MGC94198
		Rattus norvegicus	RefSeq	GI_62663386	ILMN_51574	LOC498725	XM_579868.1	XM_579868.1		498725	62663386	XM_579868.1	LOC498725	XP_579868.1	ILMN_1650348	4230168	S	639	ACGGCTTTGGCAGTGCTGGCAGTGCAATCATTTGTCCCCACACCTGTGAC					"PREDICTED: Rattus norvegicus LOC498725 (LOC498725), mRNA."
		Rattus norvegicus	RefSeq	GI_62658080-S	ILMN_70137	LOC501778	XM_577179.1	XM_577179.1		501778	62658080	XM_577179.1	LOC501778	XP_577179.1	ILMN_1373781	580010	S	830	GACCCTCCCCAGCCGCAGGAAGCCAATGGGAAACGGAAGTTCATTTGCGA					"PREDICTED: Rattus norvegicus similar to ribosomal protein L37 (LOC501778), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62652647	ILMN_292302	RGD1308613	NM_001014086.1	NM_001014086.1		315095	62078904	NM_001014086.1	RGD1308613	NP_001014108.1	ILMN_1650250	4150156	S	1736	CAGAAGCATTCCTGGTCCGCAATAGGCCCAGACAACGCAGAGCCTGACAG	7	-	114422172-114422221	7q34	"Rattus norvegicus similar to serine/threonine kinase 22A (spermiogenesis associated); testis-specific serine/threonine kinase (RGD1308613), mRNA."				MGC105906	MGC105906
		Rattus norvegicus	RefSeq	GI_62640914-S	ILMN_60687	LOC499206	XM_574492.1	XM_574492.1		499206	62640914	XM_574492.1	LOC499206	XP_574492.1	ILMN_1364865	4150167	S	1433	CACACCAGACTTCTCGCCAGAAACTATGAAGGCCAGAAGATCCTAGACTG					"PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC499206), mRNA."
Transporter -> Other transporter	Carbohydrate metabolism;Transport -> Small molecule transport;Transport -> Extracellular transport and import;Immunity and defense -> Detoxification	Rattus norvegicus	RefSeq	GI_19923677-S	ILMN_288635	ABCC9	NM_013040.2	NM_013040.2		25560	19923677	NM_013040.2	Abcc9	NP_037172.2	ILMN_1368143	5700373	S	6405	GCTGGTGCTGCAGAAGGTTCTGCTGGGGCTGATACCCATGACGTTTGTTG				4q44	"Rattus norvegicus ATP-binding cassette, sub-family C (CFTR/MRP), member 9 (Abcc9), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; A protein complex that comprises four pore-forming (Kir6.x) and four regulatory sulphonylurea receptor (SURx) subunits and forms a transmembrane channel through which ions may pass. The opening and closing of the channel is regulated by ATP: binding of ATP to the Kir6.2 subunit inhibits channel activity, whereas binding of Mg2+-complexed ATP or ADP to the SUR1 subunit stimulates channel activity [goid 8282] [evidence TAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs [goid 30017] [evidence ISS]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence IDA]"	"The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The translocation of the cell body forward during cell migration, mediated by tractional force on its substrate and tension in the cortical cytoskeleton. Adhesions transmit propulsive forces and serve as traction points over which the cell moves [goid 6932] [evidence NAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Reactions triggered in response to the presence of a virus that act to protect the cell or organism [goid 51607] [evidence ISS]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IMP]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease [goid 8144] [evidence IDA]; Combining with sulfonylurea to initiate a change in cell activity [goid 8281] [evidence TAS]; Combining with sulfonylurea to initiate a change in cell activity [goid 8281] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Interacting selectively with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse [goid 19905] [evidence IPI]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]"	Sur2	Sur2
		Rattus norvegicus	RefSeq	GI_62638808-S	ILMN_273877	RGD1566248_PREDICTED	XR_007895.1	XR_007895.1		499060	109460942	XR_007895.1	RGD1566248_predicted		ILMN_1374861	2060176	S	1654	GGAACAGGCCAGAACTCTGCGAGAGACTAATCTTGATGCCCAGACCCACC				1q12	"PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ14345 (predicted) (RGD1566248_predicted), mRNA."
Transfer/carrier protein -> Mitochondrial carrier protein	Intracellular protein traffic -> Mitochondrial transport;Transport	Rattus norvegicus	RefSeq	GI_25742815-S	ILMN_300072	TIMM17A	NM_019351.1	NM_019351.1		54311	25742815	NM_019351.1	Timm17a	NP_062224.1	ILMN_1367338	670458	S	598	GAAAGCCTTAGGTGGGACACCGGCGGCCAAGCAGGCCATCAAGAGACATT	13	-	48297766-48297815	13q13	"Rattus norvegicus translocase of inner mitochondrial membrane 17 homolog A (yeast) (Timm17a), nuclear gene encoding mitochondrial protein, mRNA."	"A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IMP]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The protein transport machinery of the mitochondrial inner membrane that contains three essential Tim proteins: Tim17 and Tim23 are thought to build a preprotein translocation channel while Tim44 interacts transiently with the matrix heat-shock protein Hsp70 to form an ATP-driven import motor [goid 5744] [evidence IPI]; The protein transport machinery of the mitochondrial inner membrane that contains three essential Tim proteins: Tim17 and Tim23 are thought to build a preprotein translocation channel while Tim44 interacts transiently with the matrix heat-shock protein Hsp70 to form an ATP-driven import motor [goid 5744] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IPI]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]"	"Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]; Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated [goid 15450] [evidence IPI]; Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated [goid 15450] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]"	Timm17	Timm17
Miscellaneous function -> Other miscellaneous function protein	Immunity and defense -> Other immune and defense;Miscellaneous	Rattus norvegicus	RefSeq	GI_62661727-S	ILMN_300129	LOC364427	NM_001024803.1	NM_001024803.1		364427	67078411	NM_001024803.1	LOC364427	NP_001019974.1	ILMN_1349021	2120204	S	1806	TGGTGCCATGGTCCCAAGTTTGGTGAAGGTTTCGGCATCATCCGATCCTG	15	-	55944815-55944864	15q11	"Rattus norvegicus similar to CG5407-PA, isoform A (LOC364427), mRNA."			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576972-S	ILMN_266937	OLR262	NM_001000221.1	NM_001000221.1		293400	47576972	NM_001000221.1	Olr262	NP_001000221.1	ILMN_1355996	2570458	S	291	TCTTGGGTGTGCCATCCAGCTCAGTTTAGCTGCTTTTTGTGGTACAGTTG	1	-	165821143-165821192	1q33	"Rattus norvegicus olfactory receptor 262 (Olr262), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr262	Olr262
		Rattus norvegicus	RefSeq	GI_62643977-S	ILMN_51910	LOC502546	XM_578032.1	XM_578032.1		502546	62643977	XM_578032.1	LOC502546	XP_578032.1	ILMN_1356113	2810484	S	472	GGGAGAATTCCCTCTTCACAGATTGCTGCCTGGTGGAGATGATGGGCTTC					"PREDICTED: Rattus norvegicus similar to TDPOZ4 (LOC502546), mRNA."
Oxidoreductase -> Dehydrogenase;Oxidoreductase -> Reductase	Other metabolism	Rattus norvegicus	RefSeq	GI_62650816	ILMN_280399	DHRS7	NM_001013098.1	NM_001013098.1		299131	61556947	NM_001013098.1	Dhrs7	NP_001013116.1	ILMN_1650087	3780670	S	1440	GGACAGGAATCCCTATACCCTTGAGTGCTCCACCTTCAGAACAACCCATT	6	-	95005938-95005987	6q24	"Rattus norvegicus dehydrogenase/reductase (SDR family) member 7 (Dhrs7), mRNA."		The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	"The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]"	MGC124901; DR-NR#3	MGC124901; DR-NR#3
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Signal transduction -> Intracellular signaling cascade -> NF-kappaB cascade;Immunity and defense -> Cytokine/chemokine mediated immunity	Rattus norvegicus	RefSeq	GI_16758077-S	ILMN_276254	IKBKB	NM_053355.1	NM_053355.1		84351	16758077	NM_053355.1	Ikbkb	NP_445807.1	ILMN_1357714	1570020	S	2755	GACGGTGATACCAAGCTCCCTGATGTCCCGGCTCCTTTAAGCCACAGAGC	16	+	73857821-73857870	16q12.5	"Rattus norvegicus inhibitor of kappaB kinase beta (Ikbkb), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A protein serine/threonine kinase that phosphorylates IkappaB, thereby targeting this for proteasomal degradation and allowing the nuclear translocation of kB. Composed of alpha, beta and gamma subunits, the latter not having kinase activity but presumed to play a regulatory role [goid 8385] [evidence IPI]"	"The process of regulating the proliferation and elimination of B cells such that the total number of B cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 1782] [evidence ISS]; A process whereby force is generated within skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the skeletal muscle, the muscle contraction takes advantage of an ordered sarcomeric structure and in most cases it is under voluntary control [goid 3009] [evidence IEP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group into an I-kappaB protein [goid 7252] [evidence IDA]; The process of introducing a phosphate group into an I-kappaB protein [goid 7252] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that modulates an I-kappaB kinase/NF-kappaB induced cascade [goid 43122] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence ISS]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IMP]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IDA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + IkappaB protein = ADP + IkappaB phosphoprotein [goid 8384] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IPI]"	AIM-1	AIM-1
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47577182-S	ILMN_265068	OLR34	NM_001000689.1	NM_001000689.1		404894	47577182	NM_001000689.1	Olr34	NP_001000689.1	ILMN_1351277	730180	S	390	CCCTATGATTATGAACCATCAGTTCTGTGTTCAGATGACACTGGCTTCCC	1	+	142923319-142923368	1q32	"Rattus norvegicus olfactory receptor 34 (Olr34), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr34	Olr34
Ion channel -> Voltage-gated ion channel -> Voltage-gated potassium channel	Transport -> Ion transport -> Cation transport	Rattus norvegicus	RefSeq	GI_62657336-S	ILMN_272387	RGD1566063_PREDICTED	XM_001081684.1	XM_001081684.1		498024	109492227	XM_001081684.1	RGD1566063_predicted	XP_001081684.1	ILMN_1372689	1340451	S	1057	GGAGGATAAGGTGTCCTGGCTGTGGTTGGAGCATGGGAGTTGCTGTTCCC				10q32.3	"PREDICTED: Rattus norvegicus similar to Potassium channel tetramerisation domain containing protein 2 (predicted) (RGD1566063_predicted), mRNA."
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Cell cycle -> Cell cycle control;Cell cycle -> Mitosis	Rattus norvegicus	RefSeq	GI_62663841-S	ILMN_278208	CDC2L5	XM_001053539.1	XM_001053539.1		306998	109505847	XM_001053539.1	Cdc2l5	XP_001053539.1	ILMN_1352533	4590632	S	4627	CATGGTCCTATCACGGTCCTCACAAACAGCAGTGACCCTTCCACAGGGCC				17q12.1	"PREDICTED: Rattus norvegicus cell division cycle 2-like 5 (cholinesterase-related cell division controller), transcript variant 1 (Cdc2l5), mRNA."		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	"Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]"
Cytoskeletal protein -> Microtubule family cytoskeletal protein	Nucleoside, nucleotide and nucleic acid metabolism -> RNA localization;Intracellular protein traffic -> General vesicle transport;Cell cycle;Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_16758747-S	ILMN_298895	DYNC1I2	NM_053880.1	NM_053880.1		116659	16758747	NM_053880.1	Dync1i2	NP_446332.1	ILMN_1367536	1780601	S	1989	CCTGGAGGGTGGCCGTAGCCTTATCGAGTCTGGCAAAGAGGATGAAGTAG	3	+	53532684-53532733	3q21	"Rattus norvegicus dynein cytoplasmic 1 intermediate chain 2 (Dync1i2), mRNA."	"Any dynein complex that catalyzes movement along a cytoplasmic microtubule; cytoplasmic dynein complexes participates in many transport activities in eukaryotes, such as mRNA localization, intermediate filament transport, nuclear envelope breakdown, apoptosis, transport of centrosomal proteins, mitotic spindle assembly, virus transport, kinetochore functions, and movement of signaling and spindle checkpoint proteins. Subunits associated with the dynein heavy chain mediate association between dynein heavy chain and cargoes,and may include light chains and light intermediate chains [goid 5868] [evidence IPI]; A 20S multiprotein assembly of total mass about 1.2 MDa that activates dynein-based activity in vivo. A large structural component of the complex is an actin-like 40 nm filament composed of actin-related protein, to which other components attach [goid 5869] [evidence IPI]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]"	"Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence TAS]"	"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]"	Dnci2; MGC93277	Dnci2; MGC93277
		Rattus norvegicus	RefSeq	GI_62651332-S	ILMN_58308	LOC500733	XM_576112.1	XM_576112.1		500733	62651332	XM_576112.1	LOC500733	XP_576112.1	ILMN_1374013	2570338	S	36	TTTATGAAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGG					"PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain variable region (LOC500733), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62660229-S	ILMN_265580	RGD1562932_PREDICTED	XM_577316.1	XM_577316.1		501893	62660229	XM_577316.1	RGD1562932_predicted	XP_577316.1	ILMN_1372841	4210128	S	1206	GTTGCAGCACACAGCCAACTGGAGCAGGATCAATGTGGAACAATACCCTG	14	-	15515563-15515612	14p22	"PREDICTED: Rattus norvegicus similar to DNA segment, Chr 5, ERATO Doi 577, expressed (predicted) (RGD1562932_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62078448-S	ILMN_294421	LRRC48	NM_001013857.1	NM_001013857.1		287371	62078448	NM_001013857.1	Lrrc48	NP_001013879.1	ILMN_1356648	1170450	S	1730	AGAGCATGGACCCAGCCCCTGAGAGTTATGGGATTTCTTTCATTCACCCC	10	+	46662578-46662627	10q22	"Rattus norvegicus leucine rich repeat containing 48 (Lrrc48), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]"		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	RGD1309150	RGD1309150
Select regulatory molecule -> Kinase modulator	Signal transduction -> Intracellular signaling cascade -> Other intracellular signaling cascade;Signal transduction -> Cell communication;Protein targeting and localization -> Protein targeting	Rattus norvegicus	RefSeq	GI_53850641-S	ILMN_280924	AKAP3	NM_001005557.1	NM_001005557.1		312720	53850641	NM_001005557.1	Akap3	NP_001005557.1	ILMN_1351919	1580671	S	2550	GAAGCGTCGGGGAGGTTCTGCAGTCGGTGCTTAGGTATGAGAAGGAGCGA	4	+	163263123-163263172	4q42	"Rattus norvegicus A kinase (PRKA) anchor protein 3 (Akap3), mRNA."	"A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence IEA]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence ISS]"	"Any process involved in the controlled movement of a cell [goid 6928] [evidence IEA]; Any process involved in the controlled movement of a cell [goid 6928] [evidence ISS]; The series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand [goid 7178] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand [goid 7178] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]"	"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Interacting selectively with any subunit of protein kinase A [goid 51018] [evidence IEA]; Interacting selectively with any subunit of protein kinase A [goid 51018] [evidence ISS]"	MGC93915	MGC93915
Select regulatory molecule -> Kinase modulator -> Kinase activator	Signal transduction -> Intracellular signaling cascade -> JNK cascade	Rattus norvegicus	RefSeq	GI_62652935-S	ILMN_48633	MAPK8IP2	XM_235565.4	XM_235565.4		315220	109481186	XM_235565.4	Mapk8ip2	XP_235565.4	ILMN_1349937	1450286	S	2760	TTGCTGGGTGGATCGCTTCGATGTGCAGTTCTTGGGCTCTGTGGAGGTAC	7	+	127778224-127778273	7q34	"PREDICTED: Rattus norvegicus mitogen-activated protein kinase 8 interacting protein 2 (Mapk8ip2), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]"	"A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence ISS]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46328] [evidence IEA]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46328] [evidence ISS]"	"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively and stoichiometrically with kinesin, a cytoplasmic protein responsible for moving vesicles and organelles towards the distal end of microtubules [goid 19894] [evidence IEA]; Interacting selectively and stoichiometrically with kinesin, a cytoplasmic protein responsible for moving vesicles and organelles towards the distal end of microtubules [goid 19894] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Increases the activity of a protein kinase, an enzyme which phosphorylates a protein [goid 30295] [evidence IEA]; Increases the activity of a protein kinase, an enzyme which phosphorylates a protein [goid 30295] [evidence ISS]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47577954-S	ILMN_299725	OLR1118	NM_001000883.1	NM_001000883.1		405182	47577954	NM_001000883.1	Olr1118	NP_001000883.1	ILMN_1356970	2690133	S	370	GTGGCCGTTTGTCACCCTCTGAGGTATTCCACAATAATGAATCCTTCCTG	8	-	16185236-16185285	8q12	"Rattus norvegicus olfactory receptor 1118 (Olr1118), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1118	Olr1118
Oxidoreductase -> Dehydrogenase;Oxidoreductase -> Reductase	Lipid, fatty acid and steroid metabolism -> Fatty acid metabolism -> Fatty acid beta-oxidation	Rattus norvegicus	RefSeq	GI_18959235-S	ILMN_270939	PECR	NM_133299.1	NM_133299.1		113956	18959235	NM_133299.1	Pecr	NP_579833.1	ILMN_1353117	4920181	S	902	CTCGCAACTTCACGATACCAGATCATGACAACTGGCCTGTGGGAGCTGGG	9	-	71415047-71415076:71417624-71417643	9q33	"Rattus norvegicus peroxisomal trans-2-enoyl-CoA reductase (Pecr), mRNA."	"A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]"	"The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]"	"The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: acyl-CoA + NADP+ = trans-2,3-dehydroacyl-CoA + NADPH + H+ [goid 19166] [evidence IEA]"
Cell adhesion molecule -> CAM family adhesion molecule	Signal transduction -> Cell communication -> Cell adhesion-mediated signaling;Cell adhesion;Developmental processes -> Other developmental process	Rattus norvegicus	RefSeq	GI_27545442-S	ILMN_276851	CEACAM10	NM_173339.1	NM_173339.1		287009	27545442	NM_173339.1	Ceacam10	NP_775461.1	ILMN_1352135	2470148	S	553	AACTGGGACCAAGTTCTGGGAAAGAAGGCTGATGTTCACTCGTGAACCCC	1	+	80076404-80076453	1q21	"Rattus norvegicus carcinoembryonic antigen-related cell adhesion molecule 10 (Ceacam10), mRNA."
		Rattus norvegicus	RefSeq	GI_62639037-S	ILMN_57006	LOC365196	XM_577766.1	XM_577766.1		365196	62639037	XM_577766.1	LOC365196	XP_577766.1	ILMN_1350641	130132	S	1158	GGAGGTGGCTTTGTTGGTCAAGGAGAAGGGGGAGACTTCAATCCACAAGG					"PREDICTED: Rattus norvegicus similar to Nucleolin (Protein C23) (LOC365196), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62650651-S	ILMN_70290	RGD1311444_PREDICTED	XM_234092.4	XM_234092.4		314075	109478174	XM_234092.4	RGD1311444_predicted	XP_234092.4	ILMN_1355933	4810242	S	2355	GATCTGTGAAAACATACCCCTAGATGAAAGCCGCAATGAGAAGCTGGACC	6	+	63704127-63704176	6q21	"PREDICTED: Rattus norvegicus similar to intracellular membrane-associated calcium-independent phospholipase A2 gamma (predicted) (RGD1311444_predicted), mRNA."
Cytoskeletal protein -> Microtubule family cytoskeletal protein	Cell structure and motility -> Cell motility	Rattus norvegicus	RefSeq	GI_62665322-S	ILMN_266528	DYNLRB2_PREDICTED	XM_001076519.1	XM_001076519.1		361415	109508831	XM_001076519.1	Dynlrb2_predicted	XP_001076519.1	ILMN_1356945	2320035	S	129	ACCCTGGACAACTCCACAACGGTTCAGTATGCGGGTCTCCTCCACCAGCT				19q12	"PREDICTED: Rattus norvegicus dynein light chain roadblock-type 2 (predicted) (Dynlrb2_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62664488-S	ILMN_294513	RGD1309362	NM_001024884.1	NM_001024884.1		307415	67846045	NM_001024884.1	RGD1309362	NP_001020055.1	ILMN_1359065	540010	S	1059	GCAGAAGATTTGGCTCGAAGCCTTTGCAGCTGACCTACTGAGCATCATCC	18	+	56177949-56177998	18q12.1	"Rattus norvegicus similar to interferon-inducible GTPase (RGD1309362), mRNA."				MGC116227	MGC116227
		Rattus norvegicus	RefSeq	GI_62638322-S	ILMN_66482	LOC498983	XM_574273.1	XM_574273.1		498983	62638322	XM_574273.1	LOC498983	XP_574273.1	ILMN_1348822	6180040	S	379	AGCCTCAGAGTCGTGGTGATGGTGGCTCGGGCTTTGGGGTGATCAGCAGT					"PREDICTED: Rattus norvegicus similar to High mobility group protein 1 (HMG-1) (Amphoterin) (Heparin-binding protein p30) (LOC498983), mRNA."
Nucleic acid binding;Synthase and synthetase -> Synthetase;Transferase -> Nucleotidyltransferase;Defense/immunity protein	Nucleoside, nucleotide and nucleic acid metabolism;Immunity and defense -> Interferon-mediated immunity;Other metabolism	Rattus norvegicus	RefSeq	GI_57222307-S	ILMN_265618	OAS1K	NM_001009489.1	NM_001009489.1		494198	57222307	NM_001009489.1	Oas1k	NP_001009489.1	ILMN_1358567	1090154	S	1095	GGGAAGTGCAGACGGAGGTTCCTGTATGTTTCTAGCAGGTGGATGAGGCC	12	-	36897116-36897128:36897276-36897278:36897279-36897302:36898409-36898418	12q16	"Rattus norvegicus 2 ' -5 ' oligoadenylate synthetase 1K (Oas1k), mRNA."		Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]	"Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]"
Molecular function unclassified	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Signal transduction -> Cell surface receptor mediated signal transduction;Immunity and defense -> B-cell- and antibody-mediated immunity	Rattus norvegicus	RefSeq	GI_62666458-S	ILMN_268549	RGD1566363_PREDICTED	XM_001062396.1	XM_001062396.1		313434	109512500	XM_001062396.1	RGD1566363_predicted	XP_001062396.1	ILMN_1355771	6100102	S	2886	GTCCAGTTCCAGTGATGAAGCAGAGAACACCACGAGGAAGAGAAGGAGAC					"PREDICTED: Rattus norvegicus similar to DNA segment on chromosome X and Y (unique) 155 expressed sequence isoform 1 (predicted) (RGD1566363_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62650543-I	ILMN_65065	TSSC1_PREDICTED	XM_576012.1	XM_576012.1		362721	62650543	XM_576012.1	Tssc1_predicted	XP_576012.1	ILMN_1375485	2680546	S	2247	CTGCCAGCCAGGAAGATCCTTGGAATCAGTTCTTGCCATCACCAGCCACC				6q16	"PREDICTED: Rattus norvegicus tumor suppressing subtransferable candidate 1 (predicted) (Tssc1_predicted), mRNA."
Miscellaneous function -> Other miscellaneous function protein	Immunity and defense -> Other immune and defense;Miscellaneous	Rattus norvegicus	RefSeq	GI_62646781-S	ILMN_58209	RGD1562785_PREDICTED	XM_216085.4	XM_216085.4		296836	109471696	XM_216085.4	RGD1562785_predicted	XP_216085.3	ILMN_1364879	6380239	S	1885	AGTCAGATAAGTGGGAAAAAGTTAACAAGACTTCCAGAAGAGGTGTCTCG	4	-	26989674-26989703:27000087-27000106	4q13	"PREDICTED: Rattus norvegicus similar to hypothetical protein 4932412H11 (predicted) (RGD1562785_predicted), mRNA."
Transcription factor -> Basal transcription factor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_62664252-S	ILMN_53006	TAF7_PREDICTED	XM_226031.4	XM_226031.4		307485	109506497	XM_226031.4	Taf7_predicted	XP_226031.2	ILMN_1358227	2260671	S	1183	GAAAGGCAAGCTTCAAGAAACCCAAGACAGAGCAAAGCGCCAGGAGGATC	18	-	30542018-30542067	18p11	"PREDICTED: Rattus norvegicus TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa (predicted) (Taf7_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_56119146-A	ILMN_271969	ARRDC3	NM_001007797.1	NM_001007797.1		309945	56119146	NM_001007797.1	Arrdc3	NP_001007798.1	ILMN_1376333	6840398	S	1027	CCTGAAGCACCACCCAGTTATGCAGAGGTTGTAACGGAGGAACAGAGACG	2|NW_047635.1	-	299295-299338:299609-299614		"Rattus norvegicus arrestin domain containing 3 (Arrdc3), mRNA."				LRRGT00048	LRRGT00048
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_34879460-S	ILMN_60103	RGD1563576_PREDICTED	XM_240482.3	XM_240482.3		306617	109503559	XM_240482.3	RGD1563576_predicted	XP_240482.2	ILMN_1350055	5270403	S	1917	GTACCATCTACTGTGTGAGCCGCGCTGGGACCTGGCGTTTCGTGCCTTCT	16	-	79430388-79430437	16q12.5	"PREDICTED: Rattus norvegicus similar to mKIAA0711 protein (predicted) (RGD1563576_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Vision	Rattus norvegicus	RefSeq	GI_20302015-S	ILMN_272430	OPN4	NM_138860.1	NM_138860.1		192223	20302015	NM_138860.1	Opn4	NP_620215.1	ILMN_1370657	4760088	S	1933	GAGCCAAGCATCTTAGCCAGCCTTTGCAACCAGGCCGGACATCTCATTGG	16	-	10250026-10250075	16p15	"Rattus norvegicus opsin 4 (Opn4), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence TAS]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; The sequence of reactions within a cell required to convert absorbed photons into a molecular signal [goid 7602] [evidence IDA]; The sequence of reactions within a cell required to convert absorbed photons into a molecular signal [goid 7602] [evidence ISS]; The sequence of reactions within a cell required to convert absorbed photons into a molecular signal [goid 7602] [evidence ISS]; The sequence of reactions within a cell required to convert absorbed photons into a molecular signal [goid 7602] [evidence IEA]; The covalent or noncovalent linking of a chromophore to a protein [goid 18298] [evidence IEA]; Any process that modulates the frequency, rate or extent of a circadian rhythm behavior [goid 42752] [evidence ISS]; Any process that modulates the frequency, rate or extent of a circadian rhythm behavior [goid 42752] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]"	"Interacting selectively with 11-cis retinal, an isomer of retinal that plays an important role in the visual process in most vertebrates. 11-cis retinal combines with opsin in the rods (scotopsin) to form rhodopsin or visual purple. Retinal is one of the three compounds that makes up vitamin A [goid 5502] [evidence ISS]; A G-protein coupled receptor that responds to incidental electromagnetic radiation, particularly visible light [goid 8020] [evidence IDA]; A G-protein coupled receptor that responds to incidental electromagnetic radiation, particularly visible light [goid 8020] [evidence ISS]; A G-protein coupled receptor that responds to incidental electromagnetic radiation, particularly visible light [goid 8020] [evidence ISS]; A G-protein coupled receptor that responds to incidental electromagnetic radiation, particularly visible light [goid 8020] [evidence IEA]"
		Rattus norvegicus	RefSeq	GI_62638380-S	ILMN_69481	LOC498993	XM_574283.1	XM_574283.1		498993	62638380	XM_574283.1	LOC498993	XP_574283.1	ILMN_1349099	5720725	S	1031	GGAAGACGGAACTAGACAGAAACCCCGGAGCCAGGAAGGAGTCAACACGC					"PREDICTED: Rattus norvegicus similar to LRRGT00021 (LOC498993), mRNA."
		Rattus norvegicus	RefSeq	GI_34932480-S	ILMN_54944	LOC364905	XM_344705.1	XM_344705.1		364905	34932480	XM_344705.1	LOC364905	XP_344706.1	ILMN_1356751	1580520	S	1	TGGCGATGGTCAGAGTGAATAGATTTGGCTGTACCGGGGGCCTAGTTACC					"PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC364905), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62663232-S	ILMN_277622	RNF44	NM_001024795.1	NM_001024795.1		361212	67078431	NM_001024795.1	Rnf44	NP_001019966.1	ILMN_1359873	5290095	S	1338	TGAGCAGACGCTGTGTGTGGTCTGCTTCAGTGACTTCGAGGTGCGGCAGC	17	+	15993602-15993613:15993686-15993723	17p14	"Rattus norvegicus ring finger protein 44 (Rnf44), mRNA."			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62660280-S	ILMN_60638	LOC360919	XM_341193.3	XM_341193.3		360919	109499550	XM_341193.3	LOC360919	XP_341194.3	ILMN_1359627	540487	S	2075	GAACACTCACGGCCTCCAGACAATTTAATGTGCAGCCACACCTCCCTGGG	14	-	18992921-18992970	14p22	"PREDICTED: Rattus norvegicus similar to alpha-fetoprotein (LOC360919), mRNA."	"That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]"	"The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]"
Transcription factor -> Zinc finger transcription factor -> KRAB box transcription factor	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62639128-S	ILMN_283879	ZFP61	NM_001017512.1	NM_001017512.1		499094	62945379	NM_001017512.1	Zfp61	NP_001017512.1	ILMN_1357461	6220576	S	1659	CGTGTGTACTGTGTGTGGTAAGGGCTACACTCTGAACTCGAACCTCCAGG	1	-	79505163-79505212	1q21	"Rattus norvegicus zinc finger protein 61 (Zfp61), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]"	Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]
Kinase	Lipid, fatty acid and steroid metabolism -> Lipid metabolism;Signal transduction -> Intracellular signaling cascade -> Other intracellular signaling cascade	Rattus norvegicus	RefSeq	GI_62655372-S	ILMN_262377	RGD1563309_PREDICTED	XM_001065445.1	XM_001065445.1		368088	109487473	XM_001065445.1	RGD1563309_predicted	XP_001065445.1	ILMN_1354261	5570575	S	3228	GCCCATGGAGCCTGGTGAGGAAGAGAATGTGATGCTGGATCTTACTAAAC				9q35	"PREDICTED: Rattus norvegicus similar to diacylglycerol kinase, delta 130kDa isoform 1 (predicted) (RGD1563309_predicted), mRNA."
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_51491894-S	ILMN_295651	RPL15	NM_139114.2	NM_139114.2		245981	51491894	NM_139114.2	Rpl15	NP_620814.1	ILMN_1366604	1450309	S	1504	TACAGTCTGCCCGTGGGTAGATGCTCAGGTTGCTGTCTCCTGGCATTGCC	15	+	9085105-9085154	15p16	"Rattus norvegicus ribosomal protein L15 (Rpl15), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]"	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]
Cell adhesion molecule -> Cadherin	Signal transduction -> Cell communication -> Cell adhesion-mediated signaling;Cell adhesion;Developmental processes -> Embryogenesis;Developmental processes -> Ectoderm development -> Neurogenesis;Cell structure and motility -> Cell structure;Cell structure and motility -> Cell motility	Rattus norvegicus	RefSeq	GI_19924084-S	ILMN_276507	FAT3	NM_138544.1	NM_138544.1		191571	19924084	NM_138544.1	Fat3	NP_612553.1	ILMN_1352249	1980450	S	14385	GAAGGAGAAGTGAGAGCTAAGCACGAGTGTGGGCGGAAGCCTTAGAAGCC	8	-	12701791-12701840	8q12	"Rattus norvegicus FAT tumor suppressor homolog 3 (Drosophila) (Fat3), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]"	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62667055-S	ILMN_273536	ZMYM3	XM_001081960.1	XM_001081960.1		317260	109510912	XM_001081960.1	Zmym3	XP_001081960.1	ILMN_1359133	510333	S	4185	TCGCATTCTGGCTGTGCGGGAGATTTATGAGGAACTTGGTCGTCCTGGGG	X	-	89477877-89477926	Xq31	"PREDICTED: Rattus norvegicus zinc finger, MYM-type 3 (Zmym3), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"		Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62649421-S	ILMN_283124	LOC362564	XM_001063544.1	XM_001063544.1		362564	109476929	XM_001063544.1	LOC362564	XP_001063544.1	ILMN_1372980	3390324	S	1609	GCAGGGCTGTAAAGCATCAGAGTAGCCTGTCGGGACCACAATACGAACTG				5q35	"PREDICTED: Rattus norvegicus hypothetical LOC362564 (LOC362564), mRNA."	"A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]"
Receptor;Ion channel -> Other ion channel	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62642031	ILMN_264855	TRPM3_PREDICTED	XM_001079904.1	XM_001079904.1		309407	109463708	XM_001079904.1	Trpm3_predicted	XP_001079904.1	ILMN_1650447	2320390	S	5085	CTCTGACAGTGAGGAAAATGAGGCCAGAGGCCGGAGAGCTGCCAATCCGA				1q51	"PREDICTED: Rattus norvegicus transient receptor potential cation channel, subfamily M, member 3 (predicted) (Trpm3_predicted), mRNA."
Synthase and synthetase -> Synthetase;Ligase -> Other ligase	Amino acid metabolism -> Amino acid biosynthesis	Rattus norvegicus	RefSeq	GI_62655024-S	ILMN_268021	RGD1306332_PREDICTED	XM_001060870.1	XM_001060870.1		299507	109487062	XM_001060870.1	RGD1306332_predicted	XP_001060870.1	ILMN_1349109	6420053	S	1802	GGTTGGTGACCGAGGATGCTGTGCAGTCTTACAAGAGCAGTGCAAAGGTG				9q22	"PREDICTED: Rattus norvegicus similar to HCV NS3-transactivated protein 1 (predicted) (RGD1306332_predicted), mRNA."
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation	Rattus norvegicus	RefSeq	GI_62648907-S	ILMN_271402	MELK_PREDICTED	XM_001064686.1	XM_001064686.1		362510	109476341	XM_001064686.1	Melk_predicted	XP_001064686.1	ILMN_1364553	4210280	S	1810	GGAACAAGAAGAAGGGCTCTGCCAAAGATGGGCCAAGAAGGCGAAAGCTG				5q22	"PREDICTED: Rattus norvegicus maternal embryonic leucine zipper kinase (predicted) (Melk_predicted), mRNA."
Membrane traffic protein -> Vesicle coat protein	Intracellular protein traffic -> General vesicle transport	Rattus norvegicus	RefSeq	GI_62653147-S	ILMN_269112	COPZ1_PREDICTED	XM_001069027.1	XM_001069027.1		315345	109483028	XM_001069027.1	Copz1_predicted	XP_001069027.1	ILMN_1364072	5080021	S	428	AGCGAGCTTTGCTGGAGAACATGGAGGGGCTCTTCTTGGCTGTGGATGAA				7q36	"PREDICTED: Rattus norvegicus coatomer protein complex, subunit zeta 1 (predicted) (Copz1_predicted), mRNA."
Extracellular matrix	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62650232-S	ILMN_49517	LOC313831	XM_233802.3	XM_233802.3		313831	62650232	XM_233802.3	LOC313831	XP_233802.3	ILMN_1370407	2640072	S	3721	TGCCTGGGGGCATTCGCTTCACGCCATCTTTCGTCTCCACAGGGGTGATC				6q11	"PREDICTED: Rattus norvegicus similar to vitrin (LOC313831), mRNA."
Nucleic acid binding -> Helicase -> RNA helicase	Nucleoside, nucleotide and nucleic acid metabolism -> Pre-mRNA processing -> mRNA splicing	Rattus norvegicus	RefSeq	GI_62659498-S	ILMN_50818	DHX9_PREDICTED	XM_239780.4	XM_239780.4		304859	109497979	XM_239780.4	Dhx9_predicted	XP_239780.4	ILMN_1370524	3990113	S	4223	GGTGGGGGCTATAGAGGATCTGGAGGATTCCAGCGAAGGGGTTATGGAGG	13	-	68471607-68471656	13q21	"PREDICTED: Rattus norvegicus DEAH (Asp-Glu-Ala-His) box polypeptide 9 (predicted) (Dhx9_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62654868-S	ILMN_288777	RGD1561213_PREDICTED	XR_008625.1	XR_008625.1		367222	109486825	XR_008625.1	RGD1561213_predicted		ILMN_1366117	3440603	S	19	AAGAGGTGAGGCACTCGGTACATGCTCTCTAGGCCCTTTAGGACACATGG				9q12	"PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1561213_predicted), mRNA."
Synthase and synthetase -> Synthetase;Ligase -> Other ligase	Amino acid metabolism -> Amino acid biosynthesis;Nitrogen metabolism	Rattus norvegicus	RefSeq	GI_31341232-S	ILMN_297515	LGSN	NM_181383.2	NM_181383.2		316304	31341232	NM_181383.2	Lgsn	NP_852048.1	ILMN_1367567	2640020	S	1815	GCCCCTCCCCCACGGATTACTGGGCAGATGAAATGGGATTGGTGAGATCC	9	+	29871468-29871517	9q21	"Rattus norvegicus lengsin, lens protein with glutamine synthetase domain (Lgsn), mRNA."		"The chemical reactions and pathways resulting in the formation of glutamine, 2-amino-4-carbamoylbutanoic acid [goid 6542] [evidence IEA]; The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds; includes nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium [goid 6807] [evidence IEA]"	"Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: ATP + L-glutamate + NH3 = ADP + phosphate + L-glutamine [goid 4356] [evidence IEA]"	Lgs	Lgs
Ligase -> Other ligase	Carbohydrate metabolism -> Gluconeogenesis	Rattus norvegicus	RefSeq	GI_31543463-S	ILMN_281736	PC	NM_012744.2	NM_012744.2		25104	31543463	NM_012744.2	Pc	NP_036876.2	ILMN_1368486	2100075	S	3716	TGGGACAGCACACACACTACCTGCAATGGCCCTCCCATTCCCTTCAGCTA	1	+	207212481-207212530	1q42	"Rattus norvegicus pyruvate carboxylase (Pc), nuclear gene encoding mitochondrial protein, mRNA."
Transporter -> Other transporter	Transport -> Ion transport	Rattus norvegicus	RefSeq	GI_62663925-S	ILMN_277398	SLC39A12_PREDICTED	XM_001072845.1	XM_001072845.1		291328	109506197	XM_001072845.1	Slc39a12_predicted	XP_001072845.1	ILMN_1360213	6980706	S	2022	GGACTGTACATTGGTCTCTCGGTGTCTGCTGATCCACGTGTCCAAGACTG				17q12.3	"PREDICTED: Rattus norvegicus solute carrier family 39 (zinc transporter), member 12 (predicted) (Slc39a12_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62650547-S	ILMN_65241	LOC298842	XM_216656.3	XM_216656.3		298842	62650547	XM_216656.3	LOC298842	XP_216656.3	ILMN_1356943	2900736	S	999	TTCACAGTGCAGATACCCCACAAGCGCCTACGACAGCCCCCACCCTGCTA					"PREDICTED: Rattus norvegicus similar to Prolactin regulatory element-binding protein (Mammalian guanine nucleotide exchange factor mSec12) (LOC298842), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62660633-S	ILMN_64393	SH3TC1_PREDICTED	XM_223527.3	XM_223527.3		305441	62660633	XM_223527.3	Sh3tc1_predicted	XP_223527.3	ILMN_1357201	1990465	S	4404	CTCAGAGGAGCCCAATCTTTTGCAGGAGCAATCTGTGAGCAGGAGCTGAC				14q21	"PREDICTED: Rattus norvegicus SH3 domain and tetratricopeptide repeats 1 (predicted) (Sh3tc1_predicted), mRNA."
Transporter -> ATP-binding cassette (ABC) transporter	Transport	Rattus norvegicus	RefSeq	GI_40018561-S	ILMN_294089	NECAP2	NM_199096.1	NM_199096.1		298598	40018561	NM_199096.1	Necap2	NP_954527.1	ILMN_1361729	5130711	S	1583	CTGGGCTCACAGGTTCATGGTGTAGCTGGCCCACTTGTCTTTCCCGGATG	5	-	159924949-159924998	5q36	"Rattus norvegicus NECAP endocytosis associated 2 (Necap2), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; A clathrin coat found on a vesicle [goid 30125] [evidence ISS]; A clathrin coat found on a vesicle [goid 30125] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence ISS]; A clathrin coat found on a vesicle [goid 30125] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]"	"A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC72598	MGC72598
Kinase	Intracellular protein traffic;Protein targeting and localization;Transport	Rattus norvegicus	RefSeq	GI_40254771-S	ILMN_295687	SNX16	NM_022289.2	NM_022289.2		64088	40254771	NM_022289.2	Snx16	NP_071625.2	ILMN_1370095	2450088	S	2044	TCACTGGGGTTGCCTCTTTCAGAACACTACCTCTTTTTGCTAATCAAGGC	2	+	93296097-93296146	2q23	"Rattus norvegicus sorting nexin 16 (Snx16), mRNA."		"Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The directed movement of substances, in membrane-bounded vesicles, from the early sorting endosomes to the late sorting endosomes; transport occurs along microtubules and can be experimentally blocked with microtubule-depolymerizing drugs [goid 45022] [evidence IDA]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any inositol-containing glycerophospholipid [goid 35091] [evidence IEA]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62656038-S	ILMN_273069	LOC497899	NM_001017472.1	NM_001017472.1		497899	62945299	NM_001017472.1	LOC497899	NP_001017472.1	ILMN_1351260	5290600	S	746	CCCAGGAACCAGCCTTGGGATTATGGTGTTGCTGCTCCTTCTGCACAGCT	10	-	36776546-36776595	10q22	"Rattus norvegicus similar to hypothetical protein 4930503F14 (LOC497899), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"	"The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]"	"Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62945299	ILMN_273069	LOC497899	NM_001017472.1	NM_001017472.1		497899	62945299	NM_001017472.1	LOC497899	NP_001017472.1	ILMN_1530465	2340292	S	1029	TGTGGGCTTATTTCTCTACCTCATAAGGGAAAAATGTGGAGTTAAATAAA	10	-	36776263-36776312	10q22	"Rattus norvegicus similar to hypothetical protein 4930503F14 (LOC497899), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"	"The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]"	"Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62665439-S	ILMN_286738	RGD1307980_PREDICTED	XM_001053807.1	XM_001053807.1		292087	109509045	XM_001053807.1	RGD1307980_predicted	XP_001053807.1	ILMN_1371593	360427	S	4212	GCATGAAGGACGGCAGAAAGACCAAGGGAGCATGGATGACCTGCCAGTGG				19q12	"PREDICTED: Rattus norvegicus similar to mKIAA0133 protein (predicted) (RGD1307980_predicted), mRNA."
Miscellaneous function	Protein metabolism and modification -> Translational regulation	Rattus norvegicus	RefSeq	GI_62718740-S	ILMN_289294	LOC363418	XM_001056019.1	XM_001056019.1		363418	109496262	XM_001056019.1	LOC363418	XP_001056019.1	ILMN_1366443	5050133	S	30	CTCTACTCCCTTGACCCAGAAAACCCCACGAAATCACGCAAGTCAAGAGG					"PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L17 (L23) (Amino acid starvation-induced protein) (ASI) (LOC363418), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site) [goid 15934] [evidence IEA]"	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]
Nucleic acid binding -> Translation factor -> Translation initiation factor	Protein metabolism and modification -> Protein biosynthesis;Protein metabolism and modification -> Translational regulation	Rattus norvegicus	RefSeq	GI_58865555-A	ILMN_284085	EIF3E	NM_001011990.1	NM_001011990.1		299872	58865555	NM_001011990.1	Eif3e	NP_001011990.1	ILMN_1376581	6450463	S	784	CGTCATAACCAACAAAGATGTGCGGAAACGCCGGCAGGTGCTGAAAGACC	7	-	79026043-79026092	7q31	"Rattus norvegicus eukaryotic translation initiation factor 3, subunit E (Eif3e), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]"	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]
Transcription factor -> Zinc finger transcription factor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Developmental processes	Rattus norvegicus	RefSeq	GI_62659468-S	ILMN_299525	RNF2	NM_001025667.1	NM_001025667.1		304850	71043689	NM_001025667.1	Rnf2	NP_001020838.1	ILMN_1371460	4760673	S	1677	GTGGCTCCTTTAGGGAGGACACCTCGACCTAGGAGGTTTTCACAGTTCTG	13	-	66346315-66346364	13q21	"Rattus norvegicus ring finger protein 2 (Rnf2), mRNA."	"A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [evidence IEA]; A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [evidence ISS]; A condensed mass of compacted chromatin that represents an inactivated X chromosome [goid 1739] [evidence IEA]; A condensed mass of compacted chromatin that represents an inactivated X chromosome [goid 1739] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]; Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins [goid 16604] [evidence IEA]; Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins [goid 16604] [evidence ISS]; A chromatin-associated multiprotein complex containing Polycomb Group proteins. In Drosophila, Polycomb group proteins are involved in the long-term maintenance of gene repression, and PcG protein complexes associate with Polycomb group response elements (PREs) in target genes to regulate higher-order chromatin structure [goid 31519] [evidence IEA]; A chromatin-associated multiprotein complex containing Polycomb Group proteins. In Drosophila, Polycomb group proteins are involved in the long-term maintenance of gene repression, and PcG protein complexes associate with Polycomb group response elements (PREs) in target genes to regulate higher-order chromatin structure [goid 31519] [evidence ISS]"	"Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent [goid 278] [evidence IEA]; Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent [goid 278] [evidence ISS]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence IEA]; A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. In Deuterostomes the initial blastopore becomes the anus and the mouth forms second [goid 1702] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The establishment, maintenance and elaboration of the anterior/posterior axis [goid 9948] [evidence IEA]; The establishment, maintenance and elaboration of the anterior/posterior axis [goid 9948] [evidence ISS]; The modification of histones by addition of ubiquitin groups [goid 16574] [evidence IEA]; The modification of histones by addition of ubiquitin groups [goid 16574] [evidence ISS]"	"Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence IEA]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence ISS]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]"	MGC114502	MGC114502
Transcription factor -> Zinc finger transcription factor	Nucleoside, nucleotide and nucleic acid metabolism	Rattus norvegicus	RefSeq	GI_62644655-S	ILMN_276159	LOC310958	XM_001078082.1	XM_001078082.1		310958	109467693	XM_001078082.1	LOC310958	XP_001078082.1	ILMN_1356846	2190603	S	3848	AGTACACAGCCTTCTGCCTCTGTGTGGAGTTGTCAGTACAGCTCGTCAGA					"PREDICTED: Rattus norvegicus similar to zinc finger, ZZ domain containing 3 (LOC310958), mRNA."			Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]
Transcription factor -> Zinc finger transcription factor	Nucleoside, nucleotide and nucleic acid metabolism	Rattus norvegicus	RefSeq	GI_62644567-S	ILMN_276159	LOC310958	XM_001078082.1	XM_001078082.1		310958	109467693	XM_001078082.1	LOC310958	XP_001078082.1	ILMN_1363540	380079	S	1810	GCCAAAGAGAGTGCCAGTCAGCACACTGCGGAAGAGGAAGATGATGACCC					"PREDICTED: Rattus norvegicus similar to zinc finger, ZZ domain containing 3 (LOC310958), mRNA."			Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62653424-A	ILMN_264532	RPS25	NM_001005528.1	NM_001005528.1		122799	53850581	NM_001005528.1	Rps25	NP_001005528.1	ILMN_1376541	4010494	S	13	GGTCCACACTACTCTCTGAGTTTCGCCATGCCGCCCAAAGACGACAAGAA	8	+	47374315-47374341:47374342-47374344:47374575-47374594	8q22	"Rattus norvegicus ribosomal protein s25 (Rps25), mRNA."	"A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence ISS]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence IDA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [evidence ISS]"	"The aggregation, arrangement and bonding together of constituent RNAs and proteins to form and maintain the small ribosomal subunit [goid 28] [evidence IMP]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]"	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]
Molecular function unclassified	Neuronal activities -> Synaptic transmission -> Neurotransmitter release	Rattus norvegicus	RefSeq	GI_40786496-S	ILMN_268475	ICA1L	NM_199400.1	NM_199400.1		316432	40786496	NM_199400.1	Ica1l	NP_955432.1	ILMN_2039807	2680730	S	894	GAGATTTGAGAGAGAACCAGCAGTTGCACGCGCTCTGCCTAGAGACTCAC	9	-	58556245-58556275:58564469-58564487	9q31	"Rattus norvegicus islet cell autoantigen 1-like (Ica1l), mRNA."
		Rattus norvegicus	RefSeq	GI_62646134-S	ILMN_69852	LOC502664	XM_578159.1	XM_578159.1		502664	62646134	XM_578159.1	LOC502664	XP_578159.1	ILMN_1359013	2640097	S	1060	CAAAGGTACGGATGTGGCAAACCAGCGGAACTTGCAGTGTGCCGGTCCTT					"PREDICTED: Rattus norvegicus similar to galactokinase 2 (LOC502664), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62652992-S	ILMN_51357	TMEM16F_PREDICTED	XM_235640.4	XM_235640.4		315272	109481230	XM_235640.4	Tmem16f_predicted	XP_235640.4	ILMN_1361175	450100	S	2658	TCACGAGAGTCACCTCAAAGACCTGACCAAAAACATGGGGCTCATCGCCG	7	+	134621305-134621354	7q35	"PREDICTED: Rattus norvegicus transmembrane protein 16F (predicted) (Tmem16f_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62658350-S	ILMN_66620	LOC363855	XM_577203.1	XM_577203.1		363855	62658350	XM_577203.1	LOC363855	XP_577203.1	ILMN_1361306	4730619	S	1318	AGGGGACCTGGGACCTGGACGACTGCCAAGGACTGAGGACAGAAATGTTA				12p12	"PREDICTED: Rattus norvegicus similar to MAP kinase kinase 7 beta 2 (LOC363855), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47087082-S	ILMN_286598	TCF19	NM_213561.2	NM_213561.2		406195	78187976	NM_213561.2	Tcf19	NP_998726.2	ILMN_1371788	60315	S	1300	GCCAGCATACCAGGCAAGTCCCCTGTACTGAGCACCCACCCTAACCCTAA					"Rattus norvegicus transcription factor 19 (Tcf19), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_56119123-A	ILMN_301130	CMTM6	NM_001007802.2	NM_001007802.2		316035	82617558	NM_001007802.2	Cmtm6	NP_001007803.1	ILMN_1376882	1230181	S	474	GTTTCTACTGGACTTCGTCGTCATGCTGTGTGAGAAGCTGCGGGAGAGCC	8	+	119165403-119165452	8q32	"Rattus norvegicus CKLF-like MARVEL transmembrane domain containing 6 (Cmtm6), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"			Cklfsf6; Da2-17; LRRGT00102	Cklfsf6; Da2-17; LRRGT00102
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	Rn.98431	ILMN_301130	CMTM6	NM_001007802.2	NM_001007802.2		316035	82617558	NM_001007802.2	Cmtm6	NP_001007803.1	ILMN_1530543	6840039	S	909	AGGAACTGGTTAATTTCTGTTGTGTCGTTAGAGATTTAATTTGTGTTTAA	8	+	119165838-119165887	8q32	"Rattus norvegicus CKLF-like MARVEL transmembrane domain containing 6 (Cmtm6), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"			Cklfsf6; Da2-17; LRRGT00102	Cklfsf6; Da2-17; LRRGT00102
		Rattus norvegicus	RefSeq	GI_62653848-S	ILMN_50452	APH1B	XM_217185.4	XM_217185.4		300802	109483586	XM_217185.4	Aph1b	XP_217185.2	ILMN_1359346	2940242	S	518	CTTGGGGCCAGGCACAGTGGGCATTCATGGTGATTCTCCTCAGTTCTTCC	8	-	71136768-71136817	8q24	"PREDICTED: Rattus norvegicus anterior pharynx defective 1b homolog (C. elegans) (Aph1b), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence ISS]"	"The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence ISS]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence IEA]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence IEA]"	"Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]"
		Rattus norvegicus	RefSeq	GI_62641589-S	ILMN_47903	IFITM5_PREDICTED	XM_215126.2	XM_215126.2		293617	62641589	XM_215126.2	Ifitm5_predicted	XP_215126.1	ILMN_1350793	520288	S	531	CTCAGAGGCCACCCTCTTTGTCCACCAAGTGTTTTCGATGGTGACCCACT					"PREDICTED: Rattus norvegicus interferon induced transmembrane protein 5 (predicted) (Ifitm5_predicted), mRNA."
Signaling molecule -> Cytokine -> Interleukin	Signal transduction -> Cell surface receptor mediated signal transduction -> Cytokine and chemokine mediated signaling pathway;Signal transduction -> Cell communication -> Ligand-mediated signaling;Immunity and defense -> Macrophage-mediated immunity;Immunity and defense -> Cytokine/chemokine mediated immunity;Apoptosis;Cell cycle -> Cell cycle control;Cell proliferation and differentiation	Rattus norvegicus	RefSeq	GI_13928691-S	ILMN_278738	IL1B	NM_031512.1	NM_031512.1		24494	13928691	NM_031512.1	Il1b	NP_113700.1	ILMN_1358370	1990148	S	948	GGCAGTCTCCAGGGGAAGCCTTTGTCCTCTGCCAAGTCAGGTCTCTCAGA	3	-	116964758-116964807	3q36	"Rattus norvegicus interleukin 1 beta (Il1b), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IMP]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence ISS]"	"The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IEA]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IMP]; A rise in body temperature above the normal, often as a response to infection [goid 1660] [evidence IEP]; A rise in body temperature above the normal, often as a response to infection [goid 1660] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence ISS]; A chronic inflammatory response to an antigenic stimulus. A chronic inflammatory response persists indefinitely during days, weeks, or months in the life of an individual [goid 2439] [evidence IEP]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEP]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IDA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence IEP]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IMP]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of glutamate [goid 14050] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IEP]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence ISS]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; Any process that activates or increases the frequency, rate, or extent of interleukin-6 production [goid 32755] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-6 production [goid 32755] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade [goid 32874] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus [goid 33198] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin D stimulus [goid 33280] [evidence IEP]; Behavior that occurs predominantly, or only, in individuals that are part of a group [goid 35176] [evidence IMP]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus [goid 42221] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a morphine stimulus. Morphine is an opioid alkaloid, isolated from opium, with a complex ring structure [goid 43278] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of JUN kinase activity [goid 43507] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chemokines [goid 45080] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chemokines [goid 45080] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-6 [goid 45410] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-6 [goid 45410] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide [goid 45429] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence IEA]; Any process that modulates the frequency, rate or extent of the regulated release of insulin [goid 50796] [evidence ISS]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence ISS]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 51091] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 51091] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; The initiation of the activity of the inactive enzyme MAP kinase by phosphorylation by a MAPKK [goid 187] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding [goid 30593] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of interleukin-6 production [goid 32755] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chemokines [goid 45080] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-6 [goid 45410] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence IEA]; The movement of leukocytes within or between different tissues and organs of the body [goid 50900] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 51091] [evidence IEA]"	"Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence TAS]; Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence ISS]; Interacting selectively with the interleukin-1 receptor [goid 5149] [evidence IEA]; Interacting selectively with the interleukin-1 receptor [goid 5149] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]"
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47834338-S	ILMN_282650	OLR1737	NM_001001422.1	NM_001001422.1		405349	47834338	NM_001001422.1	Olr1737	NP_001001422.1	ILMN_1365792	2350446	S	844	CCTGCTCTCAATCCACTCATCTACACCTTGAGAAACAAGGAAGTGAGGAG	20	+	1382220-1382269	20p12	"Rattus norvegicus olfactory receptor 1737 (Olr1737), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1737; Or13	Olr1737; Or13
Transferase -> Other transferase;Isomerase -> Epimerase/racemase	Immunity and defense -> Detoxification;Immunity and defense -> Antioxidation and free radical removal	Rattus norvegicus	RefSeq	GI_62665862-S	ILMN_69460	LOC499422	XM_574740.1	XM_574740.1		499422	62665862	XM_574740.1	LOC499422	XP_574740.1	ILMN_1356650	7100176	S	890	GCAGCAGGGCCATGTGGCAGAAGATGATGTTCCTTGCTGGCTGCAAAATC				20p12	"PREDICTED: Rattus norvegicus similar to Glutathione S-transferase, theta 3 (LOC499422), mRNA."
Hydrolase -> Lipase -> Phospholipase	Lipid, fatty acid and steroid metabolism -> Phospholipid metabolism	Rattus norvegicus	RefSeq	GI_62639141-S	ILMN_274053	RGD1565787_PREDICTED	XM_001076633.1	XM_001076633.1		308429	109461411	XM_001076633.1	RGD1565787_predicted	XP_001076633.1	ILMN_1358959	6110286	S	748	CTGGCAGGGGAGAGTGAAGAACCAAGAAGTGTGTGATTTGAGGAGCCCTG				1q21	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1810065E05 (predicted) (RGD1565787_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_52138744-S	ILMN_268710	DEAR	NM_001004448.1	NM_001004448.1		446170	52138744	NM_001004448.1	Dear	NP_001004448.1	ILMN_1354932	3870138	S	2935	GAGCTCATCTAAGGCCAGCAACTTCTCTGGTCCACTCCAGCTCTACCAAA	2	-	176736907-176736956	2q34	"Rattus norvegicus dual endothelin 1, angiotensin II receptor (Dear), mRNA."		The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IMP]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4945] [evidence IMP]; Combining with endothelin to initiate a change in cell activity [goid 4962] [evidence IMP]
Kinase	Miscellaneous	Rattus norvegicus	RefSeq	GI_62641922	ILMN_279698	RFK	NM_001014106.1	NM_001014106.1		499328	62078944	NM_001014106.1	Rfk	NP_001014128.1	ILMN_1649985	130593	S	1807	CTGAATTGGCTTGAGTTGCCTATGCTGGCAGAAGGTTGACATTGGGCGAC	1	+	220931655-220931704	1q43	"Rattus norvegicus riboflavin kinase (Rfk), mRNA."		"The chemical reactions and pathways resulting in the formation of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) [goid 9231] [evidence IEA]"	Catalysis of the reaction: ATP + riboflavin = ADP + FMN [goid 8531] [evidence IEA]
Transfer/carrier protein -> Other transfer/carrier protein	Coenzyme and prosthetic group metabolism -> Vitamin/cofactor transport;Transport -> Vitamin/cofactor transport;Coenzyme and prosthetic group metabolism -> Other coenzyme and prosthetic group metabolism	Rattus norvegicus	RefSeq	GI_16758013-S	ILMN_276624	HPX	NM_053318.1	NM_053318.1		58917	16758013	NM_053318.1	Hpx	NP_445770.1	ILMN_1363859	3870070	S	1210	GCCCCATGAGAAAGTTGATGGTGCCCTGTGTTTGGAAAAGTCCCTTGGTC	1	-	163319733-163319782	1q33	"Rattus norvegicus hemopexin (Hpx), mRNA."	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]	"The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence IEA]; The chemical reactions and pathways involving hemoglobin, including its uptake and utilization [goid 20027] [evidence ISS]; The chemical reactions and pathways involving heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 42168] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein [goid 51246] [evidence ISS]"	"Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]"	Hpxn	Hpxn
Molecular function unclassified	Protein metabolism and modification;Immunity and defense -> T-cell mediated immunity	Rattus norvegicus	RefSeq	GI_31581535-A	ILMN_60676	SQSTM1	NM_175843.3	NM_175843.3		113894	78185889	NM_175843.3	Sqstm1	NP_787037.2	ILMN_1376894	870717	A	505	TGCACAGGGAGCACAGCAAGCTCATCTTTCCCAACCCCTTTGGCCACCTC	10	-	35759877-35759926	10q22	"Rattus norvegicus sequestosome 1 (Sqstm1), transcript variant 1, mRNA."	"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence IEA]"	"Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence IDA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that modulates an I-kappaB kinase/NF-kappaB induced cascade [goid 43122] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that modulates an I-kappaB kinase/NF-kappaB induced cascade [goid 43122] [evidence ISS]"	"Interacting selectively with protein kinase C [goid 5080] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]; Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation [goid 43130] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 9177193] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]; Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation [goid 43130] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]"	ZIP; ZIP3; Osi	ZIP; ZIP3; Osi
Molecular function unclassified	Protein metabolism and modification;Immunity and defense -> T-cell mediated immunity	Rattus norvegicus	RefSeq	GI_31581535-I	ILMN_60676	SQSTM1	NM_175843.3	NM_175843.3		113894	78185889	NM_175843.3	Sqstm1	NP_787037.2	ILMN_1376089	5910717	I	1276	CCAGGCTCCTACAGACCAAGAATTATGACATCGGGGCTGCTCTGGACACG	10	-	35751932-35751936:35751937-35751981	10q22	"Rattus norvegicus sequestosome 1 (Sqstm1), transcript variant 1, mRNA."	"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center [goid 5770] [evidence IEA]"	"Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein [goid 1934] [evidence IDA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that modulates an I-kappaB kinase/NF-kappaB induced cascade [goid 43122] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that modulates an I-kappaB kinase/NF-kappaB induced cascade [goid 43122] [evidence ISS]"	"Interacting selectively with protein kinase C [goid 5080] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]; Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation [goid 43130] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 9177193] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class [goid 42169] [evidence ISS]; Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation [goid 43130] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]"	ZIP; ZIP3; Osi	ZIP; ZIP3; Osi
		Rattus norvegicus	RefSeq	GI_62654620-S	ILMN_66972	LOC501087	XM_576501.1	XM_576501.1		501087	62654620	XM_576501.1	LOC501087	XP_576501.1	ILMN_1366649	2680253	S	937	AGACACAGAAGGAACACTCGTTCAGAGCCTGCCCCTCATGTGGCCCATAC					"PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC501087), mRNA."
Nucleic acid binding -> Helicase -> DNA helicase;Hydrolase	Nucleoside, nucleotide and nucleic acid metabolism;Developmental processes -> Meiosis	Rattus norvegicus	RefSeq	GI_62662575-S	ILMN_266701	RGD1560014_PREDICTED	XM_001072319.1	XM_001072319.1		306409	109514244	XM_001072319.1	RGD1560014_predicted	XP_001072319.1	ILMN_1355993	6650113	S	4921	GGATCCCTTGCTGGATTAGACCAGGACAATAGGATACATCCAAGGGATGC				16p12	"PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20035 (predicted) (RGD1560014_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47578072	ILMN_269269	OLR61	NM_001001022.1	NM_001001022.1		405906	47578072	NM_001001022.1	Olr61	NP_001001022.1	ILMN_1360092	5690092	S	474	CACTCTGTCACTTTTCCCAGGGCCCTTCTTGCTGAAACGACTGAACTACT	1	+	160635197-160635246	1q32	"Rattus norvegicus olfactory receptor 61 (Olr61), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr61	Olr61
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Signal transduction -> Intracellular signaling cascade -> MAPKKK cascade	Rattus norvegicus	RefSeq	GI_62656606-S	ILMN_58497	KSR_PREDICTED	XM_340852.2	XM_340852.2		360573	62656606	XM_340852.2	Ksr_predicted	XP_340853.2	ILMN_1371154	6900168	S	6123	CGCTGGCGGAGTCGCTACTATGGGAAAGGACGCTATGGTCACCCTGACTT				10q25	"PREDICTED: Rattus norvegicus kinase suppressor of ras (predicted) (Ksr_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62662942-S	ILMN_58871	RASA3	XM_225020.3	XM_225020.3		29372	62662942	XM_225020.3	Rasa3	XP_225020.3	ILMN_1353437	3990014	S	5075	CAGGATGTCATGGAAACCCATCACTAGGCTGAGGGGCAGCACTGAGCACC				16q12.5	"PREDICTED: Rattus norvegicus RAS p21 protein activator 3 (Rasa3), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]"	"A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction [goid 51056] [evidence IEA]"	"Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]"
Transcription factor -> Other transcription factor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_40254724-S	ILMN_273025	ATF5	NM_172336.2	NM_172336.2		282840	40254724	NM_172336.2	Atf5	NP_758839.2	ILMN_1359736	5490300	S	1637	GTGTTTTGTGAAGGTGTGGGGGAAGGGTTGCATCTGGTGGGGGCTGATCC	1	-	95284126-95284175	1q22	"Rattus norvegicus activating transcription factor 5 (Atf5), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence IEA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell proliferation [goid 42127] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of neurogenesis, the origin and formation of neurons [goid 50768] [evidence IDA]; Any process that modulates the rate or extent of progression through the cell cycle [goid 51726] [evidence ISS]"	"The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence ISS]; Functions to initiate or regulate RNA polymerase II transcription [goid 3702] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47576366-S	ILMN_292811	OLR1548	NM_001001108.1	NM_001001108.1		406004	47576366	NM_001001108.1	Olr1548	NP_001001108.1	ILMN_1362199	4730300	S	520	CACTTTTACTGTGACATCATTCCATTGCTAAAGATTTCCTGCACTGACTC	11	+	42178741-42178790	11q12	"Rattus norvegicus olfactory receptor 1548 (Olr1548), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1548	Olr1548
		Rattus norvegicus	RefSeq	GI_62643571-S	ILMN_53990	LOC499637	XM_579992.1	XM_579992.1		499637	62643571	XM_579992.1	LOC499637	XP_579992.1	ILMN_1356253	2970110	S	8	GATCTACCTGTGGCCTGCACGCAGCATAGGAGAGCTCACTGAGGACTCAG					"PREDICTED: Rattus norvegicus LOC499637 (LOC499637), mRNA."
		Rattus norvegicus	RefSeq	GI_62646640-I	ILMN_51626	SMARCD3_PREDICTED	XM_575322.1	XM_575322.1		296732	62646640	XM_575322.1	Smarcd3_predicted	XP_575322.1	ILMN_1375383	6770647	S	414	GGACGAAGTTGCCGGAGGGGCGCGCAAAGCCACGAAAAGCAAACTTTTTG				4q11	"PREDICTED: Rattus norvegicus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 (predicted) (Smarcd3_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62665342-S	ILMN_67104	LOC307901	XM_226525.3	XM_226525.3		307901	62665342	XM_226525.3	LOC307901	XP_226525.3	ILMN_1364051	4780402	S	1862	TGAGCCCTACCGGGGCCTGACTGAGGAGGGGACATCACTATGCACTGTAA				19q12	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4632415K11 (predicted) (LOC307901), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_27545365-S	ILMN_293838	NP4	NM_173299.1	NM_173299.1		286958	27545365	NM_173299.1	Np4	NP_775421.1	ILMN_1357957	7100446	S	126	GCAGAGTCTCCCCAAGAAAGAGCTAAGGCGGCTCCAGACCAGGATATGGT	16	-	75285525-75285574	16q12.5	"Rattus norvegicus defensin NP-4 precursor (Np4), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]"	"The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence IEA]; Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack [goid 6952] [evidence TAS]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEA]; Reactions triggered in response to the presence of a fungus that act to protect the cell or organism [goid 50832] [evidence IEA]; The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence IEA]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEA]; Reactions triggered in response to the presence of a fungus that act to protect the cell or organism [goid 50832] [evidence IEA]"		NP-4	NP-4
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62655827-S	ILMN_291574	TRAF7_PREDICTED	XM_001055375.1	XM_001055375.1		360491	109490318	XM_001055375.1	Traf7_predicted	XP_001055375.1	ILMN_1371994	1580563	S	1609	CTGGGACATCGTGGGCACTGAGCTAAAGTTGAAGAAGGAACTCACAGGCC				10q12	"PREDICTED: Rattus norvegicus Tnf receptor-associated factor 7 (predicted) (Traf7_predicted), mRNA."
Extracellular matrix -> Extracellular matrix structural protein	Cell adhesion;Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_62655016-S	ILMN_269280	COL5A2	XM_001061982.1	XM_001061982.1		85250	109487074	XM_001061982.1	Col5a2	XP_001061982.1	ILMN_1360855	2940168	S	4770	CAGAACACAGAATGTGGCCCGCTTGCCCATCATAGATATCGGTCCTGTGG				9q22	"PREDICTED: Rattus norvegicus procollagen, type V, alpha 2 (Col5a2), mRNA."	Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence ISS]; Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence IEA]; A collagen heterotrimer containing type V alpha chains; [alpha1(V)]2alpha2(V) and alpha1(V)alpha2(V)alpha3(V) trimers have been observed; type V collagen triple helices associate to form fibrils [goid 5588] [evidence TAS]; Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures [goid 5581] [evidence IEA]	"The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEP]; Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix [goid 30199] [evidence ISS]; The process whose specific outcome is the progression of the skin over time, from its formation to the mature structure. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner vascular dermis (cutis, corium or true skin) composed mostly of connective tissue [goid 43588] [evidence ISS]"	The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence TAS]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence ISS]; The action of a molecule that contributes to the structural integrity of the extracellular matrix [goid 5201] [evidence IEA]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62642294-S	ILMN_57567	ANKRD22_PREDICTED	XM_220065.4	XM_220065.4		294093	109460061	XM_220065.4	Ankrd22_predicted	XP_220065.4	ILMN_1372477	7100427	S	662	TGCTCCTGGCAGCCCGTGCAGACCCCACGATAAAGAACAAGCATGGTGAG	1	-	237986283-237986292:237989742-237989781	1q52	"PREDICTED: Rattus norvegicus ankyrin repeat domain 22 (predicted) (Ankrd22_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62660508-S	ILMN_55123	LOC498370	XM_573605.1	XM_573605.1		498370	62660508	XM_573605.1	LOC498370	XP_573605.1	ILMN_1359922	1340129	S	21	GCTGCTCAGGCTATTTCGGGTGAAAGTGGAGATCAAGGAGAGACCACACC				14p11	"PREDICTED: Rattus norvegicus similar to cDNA sequence AY358078 (LOC498370), mRNA."
		Rattus norvegicus	RefSeq	GI_62661429-S	ILMN_64303	LOC290195	XM_214174.3	XM_214174.3		290195	62661429	XM_214174.3	LOC290195	XP_214174.1	ILMN_1358665	4010279	S	423	GGCCCCTGAGGCAGGACTAGAGCACTTGCCAAAATGAGAGACTCGAGGGT					"PREDICTED: Rattus norvegicus similar to T cell receptor V delta 2 (LOC290195), mRNA."
Hydrolase -> Phosphodiesterase	Lipid, fatty acid and steroid metabolism -> Fatty acid metabolism;Nucleoside, nucleotide and nucleic acid metabolism -> Metabolism of cyclic nucleotides;Signal transduction	Rattus norvegicus	RefSeq	GI_8393928-S	ILMN_289755	PDE3B	NM_017229.1	NM_017229.1		29516	8393928	NM_017229.1	Pde3b	NP_058925.1	ILMN_1363159	4610603	S	3848	TGGGGGTGGGATGGGGCCAGAAACAAACTTCTATGCTTAATCCAAAAAGG	1	+	172576566-172576615	1q34	"Rattus norvegicus phosphodiesterase 3B, cGMP-inhibited (Pde3b), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process whose specific outcome is the progression of the endocrine pancreas over time, from its formation to the mature structure. The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin [goid 31018] [evidence ISS]; The process whose specific outcome is the progression of the endocrine pancreas over time, from its formation to the mature structure. The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin [goid 31018] [evidence IEA]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence IEA]; Any process that modulates the frequency, rate or extent of the regulated release of insulin [goid 50796] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of insulin [goid 50796] [evidence IEA]"	"Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate [goid 4114] [evidence IEA]; Catalysis of the reaction: adenosine 3',5'-cyclic phosphate + H2O = adenosine 5'-phosphate [goid 4115] [evidence IDA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]"
Cytoskeletal protein -> Microtubule family cytoskeletal protein -> Microtubule binding motor protein	Intracellular protein traffic -> General vesicle transport;Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_62641244-S	ILMN_268342	DCTN5	NM_001037778.1	NM_001037778.1		308961	83649768	NM_001037778.1	Dctn5	NP_001032867.1	ILMN_1360824	4280279	S	633	CTCCAAGATGGACCTGGAGATGAGAAGGGCAGTTGGTGACGACAGAGCTG	1	+	180968540-180968589	1q36	"Rattus norvegicus dynactin 5 (Dctn5), mRNA."			"Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]"	RGD1305654; MGC112788	RGD1305654; MGC112788
Transcription factor;Transferase -> Acetyltransferase	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Signal transduction -> Cell communication -> Steroid hormone-mediated signaling	Rattus norvegicus	RefSeq	GI_62646424-S	ILMN_278449	NCOA3	XM_001072953.1	XM_001072953.1		84584	109471350	XM_001072953.1	Ncoa3	XP_001072953.1	ILMN_1349092	2360239	S	4020	GCAGGCTCAGCAATGCCACAAGCCCCTCCACAACAGTTTCCGTATGCGAC				3q42	"PREDICTED: Rattus norvegicus nuclear receptor coactivator 3 (Ncoa3), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]"	"Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the activity of any steroid hormone receptor signaling pathway [goid 33145] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the activity of an estrogen receptor signaling pathway [goid 33148] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 51091] [evidence IDA]"	"The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IEA]; Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone [goid 4402] [evidence IEA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with an estrogen receptor [goid 30331] [evidence IPI];  [goid 30374] [evidence IDA]; Interacting selectively with a nuclear hormone receptor, a ligand-dependent receptor found in the nucleus of the cell [goid 35257] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IEA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence ISS]"
		Rattus norvegicus	RefSeq	GI_62662689-S	ILMN_52825	ZFP42_PREDICTED	XM_224882.2	XM_224882.2		290765	62662689	XM_224882.2	Zfp42_predicted	XP_224882.1	ILMN_1353364	3840242	S	1130	GCTGAGGGATAAAACTGCCCTGAGGAAACACATGCTGGTCCACGGTCCCC					"PREDICTED: Rattus norvegicus zinc finger protein 42 (predicted) (Zfp42_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576852-S	ILMN_265684	OLR818	NM_001000844.1	NM_001000844.1		405133	47576852	NM_001000844.1	Olr818	NP_001000844.1	ILMN_1350486	2570288	S	642	GGTCTCTTATGCATGTATCCTTGGTGCTATACTGAGGATCCAGTCAGGGG	4	+	70920184-70920233	4q23	"Rattus norvegicus olfactory receptor 818 (Olr818), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr818	Olr818
Transferase -> Other transferase	Lipid, fatty acid and steroid metabolism -> Steroid metabolism -> Steroid hormone metabolism;Sulfur metabolism	Rattus norvegicus	RefSeq	GI_56961636-S	ILMN_266208	STE2	XM_001074217.1	XM_001074217.1		360268	109500439	XM_001074217.1	ste2	XP_001074217.1	ILMN_1365787	4280338	S	748	GAGGAGCACTACCAGCGGCATATGAAGGACTGCCCTGTGAAGTTTAGAGC				14p21	"PREDICTED: Rattus norvegicus estrogen sulfotransferase (ste2), mRNA."		"The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEA]; The chemical reactions and pathways involving estrogens, C18 steroid hormones that can stimulate the development of female sexual characteristics. Also found in plants [goid 8210] [evidence IEA]"	"Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate [goid 8146] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62643973-S	ILMN_51714	THH_PREDICTED	XM_227373.4	XM_227373.4		310588	109465160	XM_227373.4	Thh_predicted	XP_227373.4	ILMN_1359006	6520563	S	4498	CAACTGCGGAGGGAGAAGCGAGATGGTCAGTACCCGGCTGAGGAGCAATT	2	+	186533595-186533644	2q34	"PREDICTED: Rattus norvegicus trichohyalin (predicted) (Thh_predicted), mRNA."
Transporter -> ATP-binding cassette (ABC) transporter	Transport -> Extracellular transport and import	Rattus norvegicus	RefSeq	GI_11560033-S	ILMN_272034	ABCB9	NM_022238.1	NM_022238.1		63886	11560033	NM_022238.1	Abcb9	NP_071574.1	ILMN_1351742	4560091	S	3228	TGCCCAGGGTCTGGCTTTGTCCTGGTTTAAGATTTTGGGAGAACTGGGTC	12	+	33656167-33656216	12q15	"Rattus norvegicus ATP-binding cassette, sub-family B (MDR/TAP), member 9 (Abcb9), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A complex for the transport of metabolites into and out of the cell, typically comprised of four domains; two membrane-associated domains and two ATP-binding domains at the intracellular face of the membrane, that form a central pore through the plasma membrane. Each of the four core domains may be encoded as a separate polypeptide or the domains can be fused in any one of a number of ways into multidomain polypeptides. In Bacteria and Archaebacteria, ABC transporters also include substrate binding proteins to bind substrate external to the cytoplasm and deliver it to the transporter [goid 43190] [evidence TAS]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of, within or between cells [goid 15833] [evidence IEA]; The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages [goid 6857] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Enables the directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of, within or between cells [goid 15197] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence TAS]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Enables the directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages [goid 15198] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence IEA]"	Tapl	Tapl
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62665488-S	ILMN_51293	LOC502208	XM_577668.1	XM_577668.1		502208	62665488	XM_577668.1	LOC502208	XP_577668.1	ILMN_1367503	3290204	S	1370	AGCCCTGGCAGCTCTCTGCACCCCCAGCTCAGTAAGGGAGAGCCAAGATG				19q12	"PREDICTED: Rattus norvegicus similar to Gene model 587 (LOC502208), mRNA."
Select regulatory molecule -> Kinase modulator -> Kinase inhibitor;Phosphatase -> Protein phosphatase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Signal transduction -> Intracellular signaling cascade -> JNK cascade;Immunity and defense -> Stress response	Rattus norvegicus	RefSeq	GI_62648256-S	ILMN_59986	DUSP16_PREDICTED	XM_232473.3	XM_232473.3		297682	62648256	XM_232473.3	Dusp16_predicted	XP_232473.3	ILMN_1373390	4010025	S	923	GATGGTCCTGCAGACATGGGGAAGCCTGACGCACTCGTGTATAAAACCCG				4q43	"PREDICTED: Rattus norvegicus dual specificity phosphatase 16 (predicted) (Dusp16_predicted), mRNA."
Transferase -> Glycosyltransferase	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62645068-S	ILMN_285171	GTDC1	NM_001024274.1	NM_001024274.1		362129	66730365	NM_001024274.1	Gtdc1	NP_001019445.1	ILMN_1370882	2470064	S	1740	TTGCCAGGTTATCATCGGAGCCTTCTTGTGTCCTCAAAGGGCCACGGGGC	3	-	25042796-25042845	3q12	"Rattus norvegicus glycosyltransferase-like domain containing 1 (Gtdc1), mRNA."		The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]
Miscellaneous function -> Other miscellaneous function protein	Biological process unclassified	Rattus norvegicus	RefSeq	GI_56090462-S	ILMN_300903	GORASP2	NM_001007720.1	NM_001007720.1		113961	56090462	NM_001007720.1	Gorasp2	NP_001007721.1	ILMN_1365777	380746	I	2086	AGCTACTTCATGGTATGGCGACCCTGGGAGAGCGAAGACGGCAATAAACT	3	+	52923688-52923737	3q21	"Rattus norvegicus golgi reassembly stacking protein 2 (Gorasp2), mRNA."	"A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; The middle Golgi cisterna (or cisternae) [goid 5797] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"	"A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the Golgi apparatus [goid 7030] [evidence IDA]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC93180; Grs2; GRASP55	MGC93180; Grs2; GRASP55
Miscellaneous function -> Other miscellaneous function protein	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62645098	ILMN_300903	GORASP2	NM_001007720.1	NM_001007720.1		113961	56090462	NM_001007720.1	Gorasp2	NP_001007721.1	ILMN_1649928	2360278	A	1679	GTCTTTGGAAGAGACGGCGGGGGCCTGCTAGAATCCCTGTACCACTGCTA	3	+	52923281-52923330	3q21	"Rattus norvegicus golgi reassembly stacking protein 2 (Gorasp2), mRNA."	"A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; The middle Golgi cisterna (or cisternae) [goid 5797] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"	"A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the Golgi apparatus [goid 7030] [evidence IDA]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC93180; Grs2; GRASP55	MGC93180; Grs2; GRASP55
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62655994-S	ILMN_65868	HAVCR2	XM_343881.3	XM_343881.3		363578	109487989	XM_343881.3	Havcr2	XP_343882.3	ILMN_1356543	2810044	S	1398	CACCAGGAGGGTTGGTGAATGCAGGAGCAGGCAGGATTCGGTCTGAGGAA	10	+	31608845-31608894	10q21	"PREDICTED: Rattus norvegicus hepatitis A virus cellular receptor 2 (Havcr2), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62655993-S	ILMN_65868	HAVCR2	XM_343881.3	XM_343881.3		363578	109487989	XM_343881.3	Havcr2	XP_343882.3	ILMN_1359061	1170180	S	525	GAGTCATGATGGAGGTCCAGAAACGCCAGCGCCTTGAAACAGCTGAGAGG	10	+	31560730-31560779	10q21	"PREDICTED: Rattus norvegicus hepatitis A virus cellular receptor 2 (Havcr2), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"
Receptor -> Cytokine receptor -> Interleukin receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> Cytokine and chemokine mediated signaling pathway;Signal transduction -> Intracellular signaling cascade -> MAPKKK cascade;Signal transduction -> Intracellular signaling cascade -> JAK-STAT cascade;Signal transduction -> Cell communication -> Ligand-mediated signaling;Immunity and defense;Cell proliferation and differentiation	Rattus norvegicus	RefSeq	GI_8393596-S	ILMN_272224	IL6RA	NM_017020.1	NM_017020.1		24499	8393596	NM_017020.1	Il6ra	NP_058716.1	ILMN_1349175	4050438	S	4222	CCTCCAGCCTGTAGTCCTAGCATAGTCGGGTGCCAGTTCCAGGAAGTTTC	2	-	182078306-182078355	2q34	"Rattus norvegicus interleukin 6 receptor, alpha (Il6ra), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum [goid 10332] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IEP]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4896] [evidence IEA]; Combining with interleukin-6 to initiate a change in cell activity [goid 4915] [evidence IMP]; Interacting selectively with any enzyme [goid 19899] [evidence ISS]	Il6r; IL6R1	Il6r; IL6R1
Protease -> Serine protease	Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_62654367-S	ILMN_53579	RGD1562548_PREDICTED	XM_217270.4	XM_217270.4		301027	109483993	XM_217270.4	RGD1562548_predicted	XP_217270.4	ILMN_1359003	580142	S	948	CACCGTGGTGAACCAGACTGCTTGTTTGCATCCAGTGGTCTTCCTCATCT	8	+	115181820-115181869	8q32	"PREDICTED: Rattus norvegicus similar to testis serine protease2 (predicted) (RGD1562548_predicted), mRNA."
Chaperone -> Other chaperones	Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_62078910-S	ILMN_298472	TBCEL	NM_001014089.1	NM_001014089.1		315591	62078910	NM_001014089.1	Tbcel	NP_001014111.1	ILMN_1369830	6220736	S	1215	TTGGCAGAAGTGGACCTGAGACCCCAGAGCAGTGCGAAAGTCGAAGTCCA	8	-	45403807-45403856	8q22	"Rattus norvegicus tubulin folding cofactor E-like (Tbcel), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]"	"The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	RGD1308880	RGD1308880
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62653281-S	ILMN_269428	LOC687016	XM_001076743.1	XM_001076743.1		687016	109484334	XM_001076743.1	LOC687016	XP_001076743.1	ILMN_1359242	1450040	S	438	TCTTGGTTCAGCTGTATCACGTTCTCCCAGAAGTACTGCAGTGGCCTCAC					"PREDICTED: Rattus norvegicus similar to olfactory receptor 873 (LOC687016), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62642654-S	ILMN_54611	RGD1561830_PREDICTED	XM_226608.4	XM_226608.4		309925	109464192	XM_226608.4	RGD1561830_predicted	XP_226608.4	ILMN_1371192	6590692	S	894	AGTGTCCAAGAAAATGTGCCAAATAGAGAAGCGGATCTGGGGGGAACTAG	2	-	3329255-3329304	2q11	"PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ25333 (predicted) (RGD1561830_predicted), mRNA."
Cell adhesion molecule -> Cadherin	Signal transduction -> Cell communication -> Cell adhesion-mediated signaling;Cell adhesion	Rattus norvegicus	RefSeq	GI_41281623-S	ILMN_267779	PCDHA8	NM_053942.1	NM_053942.1		116781	41281623	NM_053942.1	Pcdha8	NP_446394.1	ILMN_1352332	6660497	S	2318	CCAGTCTTCCACCGCGTCCAGTATCAGAGGTCATTGGGGAAGGGCAAGAT	18	+	29712277-29712326	18p11	"Rattus norvegicus protocadherin alpha 8 (Pcdha8), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence NAS]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]
		Rattus norvegicus	RefSeq	GI_62641619-I	ILMN_49582	RPLP2	XM_215116.3	XM_215116.3		140662	62641619	XM_215116.3	Rplp2	XP_215116.2	ILMN_1375860	2470253	S	102	CAAGGCAAATTTCTTGCTTCCGGCGCACCCTTATCGTCAATGGGAGGCGC				1q41	"PREDICTED: Rattus norvegicus ribosomal protein, large P2 (Rplp2), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]"	The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Signal transduction -> Intracellular signaling cascade -> Other intracellular signaling cascade	Rattus norvegicus	RefSeq	GI_56118952-S	ILMN_294348	LIMK2	NM_024135.2	NM_024135.2		29524	56118952	NM_024135.2	Limk2	NP_077049.2	ILMN_1355049	5390692	S	3326	GAACTCCCGACATCAGTGTGGTTCAGCGTCCTGCGGCGAATTATGCACGC	14	-	83969361-83969410	14q21	"Rattus norvegicus LIM motif-containing protein kinase 2 (Limk2), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum [goid 5801] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence ISS]; The process whose specific outcome is the progression of a male gamete over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell [goid 7286] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence TAS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]"	Limk2b; Link2	Limk2b; Link2
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_27681102-S	ILMN_267598	RGD1562699_PREDICTED	XM_238022.1	XM_238022.1		291558	27681102	XM_238022.1	RGD1562699_predicted	XP_238022.1	ILMN_1366967	110167	S	173	CACGATTACACGTGCAGATGCATGCTCGGGCTGGTTGAACACGGGAAGGA	18	-	60542109-60542135:60542222-60542244	18q12.1	"PREDICTED: Rattus norvegicus RGD1562699 (predicted) (RGD1562699_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_27545431-S	ILMN_298280	OLR1361	NM_173333.1	NM_173333.1		287000	27545431	NM_173333.1	Olr1361	NP_775455.1	ILMN_1349246	6650309	S	869	ATAGCCTGAGGAACAGCGACATGAAAGCAGCTTTAAGGAAAGTGCTCGCC	10	+	12200034-12200083	10q12	"Rattus norvegicus olfactory receptor 1361 (Olr1361), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence ISS]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence ISS]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]
Hydrolase -> Deaminase	Nucleoside, nucleotide and nucleic acid metabolism -> Pyrimidine metabolism	Rattus norvegicus	RefSeq	GI_62649904-S	ILMN_53392	CDA_PREDICTED	XM_342955.3	XM_342955.3		362638	109475705	XM_342955.3	Cda_predicted	XP_342956.1	ILMN_1365916	1740014	S	652	AAGGTGCCACTTACCTGGGCCAAAGCCCTCACCCTCCTGGGGTCTCAGAA	5	-	157117516-157117565	5q36	"PREDICTED: Rattus norvegicus cytidine deaminase (predicted) (Cda_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62656745-S	ILMN_262704	BZRAP1	XM_001081125.1	XM_001081125.1		287609	109491593	XM_001081125.1	Bzrap1	XP_001081125.1	ILMN_1349411	6220253	S	5579	CCTCCAAGACCAAACTGGGGGAGTCGCAGGGCATAGCTGAGAAGAAGCAG				10q26	"PREDICTED: Rattus norvegicus benzodiazapine receptor associated protein 1 (Bzrap1), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"		Interacting selectively with the peripheral benzodiazepine receptor (PBR) [goid 30156] [evidence ISS]
Transcription factor -> Other transcription factor;Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Immunity and defense	Rattus norvegicus	RefSeq	GI_8393089-S	ILMN_274545	CEBPE	NM_017095.1	NM_017095.1		25410	8393089	NM_017095.1	Cebpe	NP_058791.1	ILMN_1356645	460520	S	566	CTGCTGGCCCCTCGCACAAGGGCAAGAAGGCAGTGAACAAAGATAGCCTG	15	-	32788176-32788225	15p13	"Rattus norvegicus CCAAT/enhancer binding protein (C/EBP), epsilon (Cebpe), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]"	"The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The process whereby phagocytes engulf external particulate material. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles [goid 6909] [evidence ISS]; The process whereby phagocytes engulf external particulate material. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles [goid 6909] [evidence IEA]; The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages [goid 30099] [evidence IEP]; The process whereby a relatively unspecialized monocyte acquires the specialized features of a macrophage [goid 30225] [evidence ISS]; The process whereby a relatively unspecialized monocyte acquires the specialized features of a macrophage [goid 30225] [evidence IEA]; The chemical reactions and pathways resulting in the formation of cytokines, any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 42089] [evidence ISS]; The chemical reactions and pathways resulting in the formation of cytokines, any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 42089] [evidence IEA]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence ISS]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEA]"	"The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEP]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]"	C/EPBe; CRP1	C/EPBe; CRP1
Transcription factor -> Other transcription factor;Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Signal transduction;Developmental processes -> Embryogenesis;Developmental processes -> Ectoderm development -> Neurogenesis;Developmental processes -> Mesoderm development -> Skeletal development;Developmental processes -> Sex determination;Cell proliferation and differentiation;Oncogenesis -> Oncogene	Rattus norvegicus	RefSeq	GI_18426855-S	ILMN_264531	RUNX3	NM_130425.1	NM_130425.1		156726	18426855	NM_130425.1	Runx3	NP_569109.1	ILMN_1372259	4760392	S	736	TTTGATCGCTCCTTCCCTACGCTGCAAAGCCTCACAGAGAGCCGCTTCCC	5	+	153972644-153972693	5q36	"Rattus norvegicus runt-related transcription factor 3 (Runx3), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]"	"Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence IEA]; The process by which the anatomical structures of the hair follicle are generated and organized [goid 31069] [evidence ISS]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IEA]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence ISS]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence IEA]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [evidence ISS]"	"Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]"
Cytoskeletal protein -> Actin family cytoskeletal protein -> Actin and actin related protein	Intracellular protein traffic -> Exocytosis;Intracellular protein traffic -> Endocytosis;Transport;Cell cycle -> Mitosis -> Cytokinesis;Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_62649007-A	ILMN_289719	ACTL7A	NM_001011973.1	NM_001011973.1		298017	58865513	NM_001011973.1	Actl7a	NP_001011973.1	ILMN_1376985	5360093	S	1153	GCAGAAGGAACTGAGCAGCATGTGTCCCAACGACACCCCACAGGTAAATG	5	+	74651108-74651157	5q24	"Rattus norvegicus actin-like 7a (Actl7a), mRNA."	"The nucleus of a male germ cell, a cell specialized to produce haploid gametes, and its descendents [goid 1673] [evidence ISS]; The nucleus of a male germ cell, a cell specialized to produce haploid gametes, and its descendents [goid 1673] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence ISS]; A long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules [goid 9434] [evidence IEA]"		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47059016-S	ILMN_285580	HMMR	NM_012964.2	NM_012964.2		25460	47059016	NM_012964.2	Hmmr	NP_037096.2	ILMN_1350866	6660746	S	2118	TGTGACCCTCAAGACTCCATTGAAAGAAGGCAACCCGAACTGCTGCTGAG				10q12	"Rattus norvegicus hyaluronan mediated motility receptor (RHAMM) (Hmmr), mRNA."		"A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures [goid 7010] [evidence NAS]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence NAS]"	"Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine [goid 5540] [evidence TAS]"	RHAMM	RHAMM
Transcription factor -> Homeobox transcription factor;Nucleic acid binding -> Other DNA-binding protein	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Developmental processes -> Mesoderm development -> Muscle development;Developmental processes -> Mesoderm development -> Heart development	Rattus norvegicus	RefSeq	GI_27680061-S	ILMN_290329	RGD1565366_PREDICTED	XM_001054069.1	XM_001054069.1		293538	109463036	XM_001054069.1	RGD1565366_predicted	XP_001054069.1	ILMN_1357845	1740739	S	736	TTGGTATTTCGGGACAGTTCGCTACTGCGAGTGCCGGTGCCACGCTCTCT				1q41	"PREDICTED: Rattus norvegicus similar to Hmx2 protein (predicted) (RGD1565366_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62645932-S	ILMN_277970	GAPDH	XM_001081305.1	XM_001081305.1		499896	109470888	XM_001081305.1	Gapdh	XP_001081305.1	ILMN_2039222	1740681	S	848	TGTGAAGCAGGCATCTGAGGGTCTACTAAAGGGCATCCTGGGCTACACTG				3q36	"PREDICTED: Rattus norvegicus glyceraldehyde 3-phosphate dehydrogenase (Gapdh), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]"	"The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IDA]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]"	"Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+ [goid 4365] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the reaction: glyceraldehyde 3-phosphate + (phosphate / H2O) + NAD(P)+ = (3-phospho-D-glyceroyl-phosphate / 3-phospho-D-glycerate) + NAD(P)H + H+ [goid 8943] [evidence NAS]; Catalysis of the reaction: glyceraldehyde 3-phosphate + (phosphate / H2O) + NAD(P)+ = (3-phospho-D-glyceroyl-phosphate / 3-phospho-D-glycerate) + NAD(P)H + H+ [goid 8943] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_34858813-S	ILMN_277970	GAPDH	XM_001081305.1	XM_001081305.1		499896	109470888	XM_001081305.1	Gapdh	XP_001081305.1	ILMN_1372773	1400136	S	1221	GGGCCTGGGGAGCCCACCCTTCTCTCTTGAATAACATCAATAAAGTTCAC				3q36	"PREDICTED: Rattus norvegicus glyceraldehyde 3-phosphate dehydrogenase (Gapdh), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]"	"The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IDA]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle [goid 6096] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]"	"Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+ [goid 4365] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the reaction: glyceraldehyde 3-phosphate + (phosphate / H2O) + NAD(P)+ = (3-phospho-D-glyceroyl-phosphate / 3-phospho-D-glycerate) + NAD(P)H + H+ [goid 8943] [evidence NAS]; Catalysis of the reaction: glyceraldehyde 3-phosphate + (phosphate / H2O) + NAD(P)+ = (3-phospho-D-glyceroyl-phosphate / 3-phospho-D-glycerate) + NAD(P)H + H+ [goid 8943] [evidence IDA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47576618-S	ILMN_295647	OLR1678	NM_001000893.1	NM_001000893.1		405194	47576618	NM_001000893.1	Olr1678	NP_001000893.1	ILMN_1369343	2450563	S	407	TGAAGCAGCGTAACTGTTTCCTGTTAGTGTCCATTGTGTGGCTGACTGGA	20	-	248301-248350	20p12	"Rattus norvegicus olfactory receptor 1678 (Olr1678), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1678	Olr1678
Select regulatory molecule -> Protease inhibitor -> Other protease inhibitor	Protein metabolism and modification -> Proteolysis;Oncogenesis	Rattus norvegicus	RefSeq	GI_27678581-S	ILMN_290115	RGD1563293_PREDICTED	XM_001059251.1	XM_001059251.1		289269	109499112	XM_001059251.1	RGD1563293_predicted	XP_001059251.1	ILMN_1361119	1340142	S	1140	GGACTGCTGCCCCATCAGGACCCATCTGAACACAGAGGAGGAGTGGTCGA				13q25	"PREDICTED: Rattus norvegicus similar to Beclin 1 (Coiled-coil myosin-like BCL2-interacting protein) (predicted) (RGD1563293_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47577600-S	ILMN_271406	OLR660	NM_001000635.1	NM_001000635.1		404828	47577600	NM_001000635.1	Olr660	NP_001000635.1	ILMN_1374360	70086	S	665	CACTACGAAACCACAGTGCAGAAGGGAGAAAAAAGGCACTTTCTACCTGC	3	+	72917240-72917289	3q24	"Rattus norvegicus olfactory receptor 660 (Olr660), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr660	Olr660
Membrane traffic protein -> Other membrane traffic protein	Intracellular protein traffic -> Other intracellular protein traffic	Rattus norvegicus	RefSeq	GI_62642732-S	ILMN_58381	RGD1564784_PREDICTED	XM_574833.2	XM_574833.2		499508	109464211	XM_574833.2	RGD1564784_predicted	XP_574833.2	ILMN_1372143	3710132	S	1980	GAGTCGTCCACCAGGAACAAGCAGTTCACAGGGACCGAGTAAGCCACATG	2	-	22757396-22757445	2q12	"PREDICTED: Rattus norvegicus similar to Zinc finger, FYVE domain containing 16 (predicted) (RGD1564784_predicted), mRNA."
Membrane traffic protein -> Other membrane traffic protein	Intracellular protein traffic -> Other intracellular protein traffic	Rattus norvegicus	RefSeq	GI_62642730-S	ILMN_58381	RGD1564784_PREDICTED	XM_574833.2	XM_574833.2		499508	109464211	XM_574833.2	RGD1564784_predicted	XP_574833.2	ILMN_1369149	6650132	S	5414	TCAGATGACGACAGGCCAGACGACCCGTGAAGTAGTCATTGTGTGGCAAT	2	-	22725721-22725770	2q12	"PREDICTED: Rattus norvegicus similar to Zinc finger, FYVE domain containing 16 (predicted) (RGD1564784_predicted), mRNA."
Cytoskeletal protein -> Actin family cytoskeletal protein -> Non-motor actin binding protein	Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_62663740-S	ILMN_65971	ACTN2_PREDICTED	XM_214499.4	XM_214499.4		291245	109505062	XM_214499.4	Actn2_predicted	XP_214499.4	ILMN_1370908	4590239	S	2828	AGGAACTTCGTCGAGAGCTGCCTCCGGATCAGGCCCAGTACTGCATCAAG	17	+	68773050-68773099	17q12.1	"PREDICTED: Rattus norvegicus actinin alpha 2 (predicted) (Actn2_predicted), mRNA."
Oxidoreductase -> Dehydrogenase	Lipid, fatty acid and steroid metabolism -> Fatty acid metabolism -> Acyl-CoA metabolism;Electron transport	Rattus norvegicus	RefSeq	GI_62654564-S	ILMN_276208	RGD1564209_PREDICTED	XM_001053896.1	XM_001053896.1		367046	109484415	XM_001053896.1	RGD1564209_predicted	XP_001053896.1	ILMN_1362440	1230113	S	664	ATGTGGTCATGTGCAGAACTGGTGGATCAGGCCCCAAAGGTATCTCCTGC				8q13	"PREDICTED: Rattus norvegicus similar to Acyl-CoA dehydrogenase family member 8, mitochondrial precursor (ACAD-8) (predicted) (RGD1564209_predicted), mRNA."
Oxidoreductase -> Dehydrogenase	Lipid, fatty acid and steroid metabolism -> Fatty acid metabolism -> Acyl-CoA metabolism;Electron transport	Rattus norvegicus	RefSeq	GI_62653376-S	ILMN_276208	RGD1564209_PREDICTED	XM_001053896.1	XM_001053896.1		367046	109484415	XM_001053896.1	RGD1564209_predicted	XP_001053896.1	ILMN_1373931	4540056	S	1649	TCCTGATTAAAGAGGTCAAGACTGGGGAGGCAAGGGCAGTGGACAGACCT				8q13	"PREDICTED: Rattus norvegicus similar to Acyl-CoA dehydrogenase family member 8, mitochondrial precursor (ACAD-8) (predicted) (RGD1564209_predicted), mRNA."
Transporter -> Cation transporter -> Hydrogen transporter;Synthase and synthetase -> Synthase -> ATP synthase;Hydrolase	Nucleoside, nucleotide and nucleic acid metabolism;Transport -> Ion transport -> Cation transport;Transport -> Small molecule transport	Rattus norvegicus	RefSeq	GI_13929109-S	ILMN_281249	ATP6AP1	NM_031785.1	NM_031785.1		83615	13929109	NM_031785.1	Atp6ap1	NP_113973.1	ILMN_1359644	6220348	S	1853	GGCGGGTGGGGGTTAAGAATGAGCGGTACACTGGGGTTTATTTCTGTGAC	X	-	160306526-160306575	Xq37	"Rattus norvegicus ATPase, H+ transporting, lysosomal accessory protein 1 (Atp6ap1), mRNA."	"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol [goid 5773] [evidence IEA]; The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell [goid 5774] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible [goid 16469] [evidence IEA]"	"The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence IMP]; The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis [goid 15986] [evidence IEA]; The directed movement of protons (hydrogen ions) into, out of, within or between cells [goid 15992] [evidence IEA]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism [goid 46933] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism [goid 46961] [evidence IEA]"	C7-1; Atp6s1	C7-1; Atp6s1
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62649921-S	ILMN_289075	PQLC2_PREDICTED	XM_342958.2	XM_342958.2		362642	62649921	XM_342958.2	Pqlc2_predicted	XP_342959.2	ILMN_1372190	2810390	S	1186	CAGACAGGTCTAGAGTTGGCACAGGTCTGGAGTTGGCGTGTGCTATGCCG	5	-	158087833-158087882	5q36	"PREDICTED: Rattus norvegicus PQ loop repeat containing 2 (predicted) (Pqlc2_predicted), mRNA."
Select regulatory molecule -> G-protein -> Small GTPase	Signal transduction -> Intracellular signaling cascade;Intracellular protein traffic -> Endocytosis -> Receptor mediated endocytosis;Intracellular protein traffic -> General vesicle transport	Rattus norvegicus	RefSeq	GI_62649116-S	ILMN_299237	LOC683719	XM_001067187.1	XM_001067187.1		683719	109476658	XM_001067187.1	LOC683719	XP_001067187.1	ILMN_1364381	5340136	S	2463	CATAGCCTGGCAAAATGTACTGCTCTTCCCTCTTCACAGCAACCGCAGGC					"PREDICTED: Rattus norvegicus similar to RAS and EF hand domain containing (LOC683719), mRNA."		"Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]"	"Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]"
Oxidoreductase -> Oxygenase	Lipid, fatty acid and steroid metabolism -> Steroid metabolism -> Steroid hormone metabolism;Electron transport	Rattus norvegicus	RefSeq	GI_8393226-S	ILMN_287043	CYP19A1	NM_017085.1	NM_017085.1		25147	8393226	NM_017085.1	Cyp19a1	NP_058781.1	ILMN_1365779	4730519	S	1181	CGCAGAGCCCTGGAGGATGACGTGATTGACGGCTACCCGGTTAAAAAGGG	8	-	57652061-57652110	8q24	"Rattus norvegicus cytochrome P450, family 19, subfamily a, polypeptide 1 (Cyp19a1), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; A cell projection in which the distal end of the axon of a nerve fiber terminates. Sensory nerve endings are classified as either free or encapsulated. The free nerve ending are the most common type of nerve ending, and are most frequently found in the skin [goid 43679] [evidence IDA]"	"The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification [goid 6694] [evidence ISS]; The chemical reactions and pathways resulting in the formation of estrogens, C18 steroid hormones that can stimulate the development of female sexual characteristics. Also found in plants [goid 6703] [evidence TAS]; The chemical reactions and pathways resulting in the formation of estrogens, C18 steroid hormones that can stimulate the development of female sexual characteristics. Also found in plants [goid 6703] [evidence TAS]; Any process that modulates the physical form or the activity of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50803] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]"	"Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IDA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence ISS]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IDA]"	Cyp19; p450arom; Aromatase	Cyp19; p450arom; Aromatase
Transcription factor -> Transcription cofactor;Select regulatory molecule -> Kinase modulator -> Kinase activator	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription elongation;Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Cell cycle -> Cell cycle control;Cell proliferation and differentiation	Rattus norvegicus	RefSeq	GI_62653019-S	ILMN_52888	CCNT1_PREDICTED	XM_235633.4	XM_235633.4		315291	109481246	XM_235633.4	Ccnt1_predicted	XP_235633.3	ILMN_1369043	1780441	S	2230	AGATCTGGCAACACAGACAAACCTCGGCCACCACCCCTCCCGTCAGAGCC	7	-	137288665-137288714	7q36	"PREDICTED: Rattus norvegicus cyclin T1 (predicted) (Ccnt1_predicted), mRNA."
Receptor;Extracellular matrix	Signal transduction -> Cell surface receptor mediated signal transduction -> Other receptor mediated signaling pathway	Rattus norvegicus	RefSeq	GI_62667503-S	ILMN_65982	LOC309349	XM_219848.2	XM_219848.2		309349	62667503	XM_219848.2	LOC309349	XP_219848.1	ILMN_1357725	4060253	S	4118	TACCAAGTATAGGCCTGGGCATCGCTACTTCGTGCTAAAGTGCCTTCGCA				Xq37	"PREDICTED: Rattus norvegicus similar to neuronal transmembrane protein Slitrk2 (LOC309349), mRNA."
		Rattus norvegicus	RefSeq	GI_62653735-S	ILMN_68051	LOC300742	XM_236289.3	XM_236289.3		300742	62653735	XM_236289.3	LOC300742	XP_236289.3	ILMN_1373336	2120707	S	2042	GGGACCATCTGGCTGTTGGGGGAAAAGGGAGATCCTGCACATTCCGAACC					"PREDICTED: Rattus norvegicus similar to Ulk3 protein (LOC300742), mRNA."
Transferase -> Glycosyltransferase	Protein metabolism and modification -> Protein modification -> Protein glycosylation	Rattus norvegicus	RefSeq	GI_34859033-S	ILMN_265635	XYLT1	XM_001078643.1	XM_001078643.1		64133	109462738	XM_001078643.1	Xylt1	XP_001078643.1	ILMN_1374862	3290487	S	2881	GGGACTGATACAGCCTGAACCCTGGCCTCTGATCTTATATGGGGGAGGGG				1q35	"PREDICTED: Rattus norvegicus xylosyltransferase 1 (Xylt1), mRNA."	"The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"		Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide [goid 8375] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the transfer of a beta-D-xylosyl residue from UDP-D-xylose to the serine hydroxyl group of an acceptor protein substrate [goid 30158] [evidence IEA]; Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide [goid 8375] [evidence IEA]
Synthase and synthetase -> Synthase;Oxidoreductase -> Other oxidoreductase;Hydrolase -> Other hydrolase;Ligase -> Other ligase	Amino acid metabolism -> Amino acid biosynthesis;Other metabolism	Rattus norvegicus	RefSeq	GI_62638470-S	ILMN_51043	MTHFD1L_PREDICTED	XM_341750.3	XM_341750.3		361472	109457708	XM_341750.3	Mthfd1l_predicted	XP_341751.3	ILMN_1364841	3140736	S	2984	GAGCACAATGCCAGGTCTGCCCACCCGACCCTGCTTTTACGATATAGACC	1	+	34873836-34873885	1p11	"PREDICTED: Rattus norvegicus methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like (predicted) (Mthfd1l_predicted), mRNA."
Select regulatory molecule	Transport -> Ion transport -> Cation transport	Rattus norvegicus	RefSeq	GI_62639396-S	ILMN_53111	LOC499129	XM_574422.2	XM_574422.2		499129	109458593	XM_574422.2	LOC499129	XP_574422.1	ILMN_2039030	2760408	S	2420	CCGTGTTTGTGTGAACACACCGCGTTCCCGGTTCATGCCATAAAGGACGC	1	-	87117401-87117450	1q21	"PREDICTED: Rattus norvegicus similar to potassium channel tetramerisation domain containing 15 (LOC499129), mRNA."
Signaling molecule -> Other signaling molecule	Neuronal activities -> Other neuronal activity	Rattus norvegicus	RefSeq	GI_27695600-S	ILMN_50384	RGD1562438_PREDICTED	XM_223399.4	XM_223399.4		305338	109499678	XM_223399.4	RGD1562438_predicted	XP_223399.4	ILMN_2040908	520564	S	1811	TCTGGTGTGAGCCTAATGCAGCCAATGTGTCGGAAGCTGTCCAGGCTGCC	14	+	44506894-44506943	14p11	"PREDICTED: Rattus norvegicus similar to amyloid beta (A4) precursor protein-binding, family B, member 2 (predicted) (RGD1562438_predicted), mRNA."
Signaling molecule -> Other signaling molecule	Neuronal activities -> Other neuronal activity	Rattus norvegicus	RefSeq	GI_62660482-S	ILMN_50384	RGD1562438_PREDICTED	XM_223399.4	XM_223399.4		305338	109499678	XM_223399.4	RGD1562438_predicted	XP_223399.4	ILMN_2038887	2480753	S	1843	GAAGCTGTCCAGGCTGCCTGCATGCTGCGATATCAGAAGTGCTTGGTAGC	14	+	44506926-44506949:44522549-44522574	14p11	"PREDICTED: Rattus norvegicus similar to amyloid beta (A4) precursor protein-binding, family B, member 2 (predicted) (RGD1562438_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62666329	ILMN_69201	LOC365604	XM_345124.2	XM_345124.2		365604	62666329	XM_345124.2	LOC365604	XP_345125.2	ILMN_1649788	4210181	S	1012	TCCACAGAGAGCAGCCGACCGGGGGTTTTAACTACTGCTGAGGAACTCTG					"PREDICTED: Rattus norvegicus similar to FLJ16517 protein (LOC365604), mRNA."
Transporter	Lipid, fatty acid and steroid metabolism -> Lipid and fatty acid transport;Transport -> Lipid and fatty acid transport	Rattus norvegicus	RefSeq	GI_6981449-S	ILMN_268949	ABCD3	NM_012804.1	NM_012804.1		25270	6981449	NM_012804.1	Abcd3	NP_036936.1	ILMN_1357729	2100524	S	3121	GTCGTCGTGAATCAGTTTGCTTGAGTGGGCTCGGAATGGGCCTTATCACG	2	-	218396069-218396118	2q41	"Rattus norvegicus ATP-binding cassette, sub-family D (ALD), member 3 (Abcd3), mRNA."	"A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence NAS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IMP]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence ISS]; The lipid bilayer surrounding a peroxisome [goid 5778] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of long-chain fatty acids into a peroxisome [goid 15910] [evidence TAS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus [goid 42221] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane [goid 42626] [evidence TAS]; Interacting selectively with a domain within the same polypeptide [goid 43621] [evidence IDA]"	Pxmp1; PMP70	Pxmp1; PMP70
		Rattus norvegicus	RefSeq	GI_62639703-S	ILMN_63011	LOC499148	XM_574443.1	XM_574443.1		499148	62639703	XM_574443.1	LOC499148	XP_574443.1	ILMN_1360493	1740440	S	1082	AGGAAGAAGGGGATGCATTGTCGCCCTGTGTGGTCGCTTCTGTCACCTCC					"PREDICTED: Rattus norvegicus similar to flt3 ligand (LOC499148), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62645449-S	ILMN_264875	RGD1309730_PREDICTED	XM_001071147.1	XM_001071147.1		295952	109470274	XM_001071147.1	RGD1309730_predicted	XP_001071147.1	ILMN_1354640	6450193	S	612	CTGAGGGGAAGCCAACGCCCGCTGTGGGAAGAACTCAGACGCAAACTGAA				3q31	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA B230118H07 (predicted), transcript variant 2 (RGD1309730_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62655135-S	ILMN_67956	LOC501151	XM_576576.1	XM_576576.1		501151	62655135	XM_576576.1	LOC501151	XP_576576.1	ILMN_1368209	5670711	S	903	TCAAAATTACCGAAGGTCTAGAACAATGCTTCTTAGCAAAGGGGGTTTTG					"PREDICTED: Rattus norvegicus similar to PRO1477 (LOC501151), mRNA."
		Rattus norvegicus	RefSeq	GI_62666925-S	ILMN_300895	RGD1566100_PREDICTED	XR_008244.1	XR_008244.1		501577	109511976	XR_008244.1	RGD1566100_predicted		ILMN_1350778	1570692	S	933	AGCGGCTGCCAAGCCTAAGGCCAAGGACACTTTCGCTCACCTACCCAAGA				Xq31	"PREDICTED: Rattus norvegicus similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma) (predicted) (RGD1566100_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62647134-S	ILMN_274091	TAS2R40	NM_001025150.1	NM_001025150.1		500101	68342014	NM_001025150.1	Tas2r40	NP_001020321.1	ILMN_1370297	3390333	S	630	GGCAGCCATTCTGCTCATCACCTCACTCAAGAGGCACACCCTGAACATGG	4	+	69967593-69967642	4q23	"Rattus norvegicus taste receptor, type 2, member 40 (Tas2r40), mRNA."
Cytoskeletal protein -> Microtubule family cytoskeletal protein -> Microtubule binding motor protein	Cell cycle -> Mitosis	Rattus norvegicus	RefSeq	GI_54312051-S	ILMN_263401	KIFC1	NM_001005878.1	NM_001005878.1		294286	54312051	NM_001005878.1	Kifc1	NP_001005878.1	ILMN_1355582	4210735	S	2147	GCCTGGCTCCTGTGCAAGCGGGTGTGCGTGTCTGTTTTGTGTATATGTAT				20p12	"Rattus norvegicus kinesin family member C1 (Kifc1), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered [goid 5769] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IEA]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any multimeric complex connected to a microtubule [goid 5875] [evidence IEA]"	"Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 3777] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]"	MGC94918	MGC94918
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62644194-S	ILMN_273092	WDR47	XM_001081957.1	XM_001081957.1		310785	109465450	XM_001081957.1	Wdr47	XP_001081957.1	ILMN_1356955	1190706	S	1822	GAGGTGCCAGTACTCAACCAACAATGCCTCGGGAGCAAAAACAGTGGGTC	2	+	204216177-204216226	2q34	"PREDICTED: Rattus norvegicus WD repeat domain 47 (Wdr47), mRNA."
Select regulatory molecule -> Kinase modulator -> Kinase activator	Signal transduction -> Intracellular signaling cascade -> NF-kappaB cascade;Protein targeting and localization -> Asymmetric protein localization;Immunity and defense -> Cytokine/chemokine mediated immunity	Rattus norvegicus	RefSeq	GI_18266705-S	ILMN_271711	IKBKAP	NM_080899.1	NM_080899.1		140934	18266705	NM_080899.1	Ikbkap	NP_543175.1	ILMN_1374637	460402	S	4359	GCAACCGAGGAGGCTGAGGCAGAAACACTGATGGAAGTTCAAGACCAGTG	5	-	74657515-74657564	5q24	"Rattus norvegicus inhibitor of kappa light polypeptide enhancer in B-cells, kinase complex-associated protein (Ikbkap), mRNA."	"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation [goid 8023] [evidence ISS]; Large protein complex composed of the RNA polymerase core complex and a variety of other proteins including transcription factor complexes TFIIA, D, E, F, and H which are required for promoter recognition, and the Mediator subcomplex. Catalyzes the synthesis of eukaryotic pre-mRNA [goid 16591] [evidence IEA]; Large protein complex composed of the RNA polymerase core complex and a variety of other proteins including transcription factor complexes TFIIA, D, E, F, and H which are required for promoter recognition, and the Mediator subcomplex. Catalyzes the synthesis of eukaryotic pre-mRNA [goid 16591] [evidence ISS]"	"The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 6357] [evidence ISS]; The process of introducing a phosphate group into an I-kappaB protein [goid 7252] [evidence IDA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]"	"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Modulation of the activity of the enzyme phosphorylase kinase [goid 8607] [evidence ISS]; Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule catalyzed by RNA polymerase II following transcription initiation [goid 16944] [evidence IEA]; Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule catalyzed by RNA polymerase II following transcription initiation [goid 16944] [evidence ISS]"
Receptor	Signal transduction	Rattus norvegicus	RefSeq	GI_62651727-S	ILMN_265693	AP3D1	XM_001076208.1	XM_001076208.1		314633	109481554	XM_001076208.1	Ap3d1	XP_001076208.1	ILMN_1360571	1740541	S	4516	CAAGGTGAAGAGACCCCATCCTGGACACTTCCTATAACTGGGTAGCTGCG				7q11	"PREDICTED: Rattus norvegicus adaptor-related protein complex 3, delta 1 subunit (Ap3d1), mRNA."		"The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence ISS]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence ISS]; The process by which an antigen-presenting cell expresses lipid antigen of exogenous origin in association with an MHC class Ib protein complex on its cell surface. Class Ib here refers to non-classical class I molecules, such as those of the CD1 family [goid 48007] [evidence IEA]; The process by which an antigen-presenting cell expresses lipid antigen of exogenous origin in association with an MHC class Ib protein complex on its cell surface. Class Ib here refers to non-classical class I molecules, such as those of the CD1 family [goid 48007] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of natural killer T cell differentiation [goid 51138] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of natural killer T cell differentiation [goid 51138] [evidence ISS]"
		Rattus norvegicus	RefSeq	GI_62653413-S	ILMN_51934	LOC503193	XM_578716.1	XM_578716.1		503193	62653413	XM_578716.1	LOC503193	XP_578716.1	ILMN_1363446	3840441	S	204	CTGGAGGACAGCAGGACCGTGGTTGATGCCATGAAATTAGGAGTAAAGGG					"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2210412K09 (LOC503193), mRNA."
Molecular function unclassified	Cell structure and motility	Rattus norvegicus	RefSeq	GI_62638903-S	ILMN_293077	CDC42EP5_PREDICTED	XM_001070494.1	XM_001070494.1		361505	109461157	XM_001070494.1	Cdc42ep5_predicted	XP_001070494.1	ILMN_1356318	1990687	S	572	GTACACATAAATAGCCGAGTTTTACGCGGGAAGGGGTGCAGAAGCAGGAC				1q12	"PREDICTED: Rattus norvegicus CDC42 effector protein (Rho GTPase binding) 5 (predicted) (Cdc42ep5_predicted), mRNA."
Kinase -> Nucleotide kinase	Nucleoside, nucleotide and nucleic acid metabolism -> Pyrimidine metabolism	Rattus norvegicus	RefSeq	GI_62649435-S	ILMN_266018	CMPK1	NM_001025655.1	NM_001025655.1		298410	71043751	NM_001025655.1	Cmpk1	NP_001020826.1	ILMN_1349851	3940050	S	1403	GCTGTCTTCTGACATCATCTGTGGGGCAAGGGTCACAAGGAGTGACTTGT	5	-	135321240-135321289	5q36	"Rattus norvegicus cytidine monophosphate (UMP-CMP) kinase 1, cytosolic (Cmpk1), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids [goid 6139] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety [goid 6221] [evidence IEA]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + (d)CMP = ADP + (d)CDP [goid 4127] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to a phosphate group (acceptor) [goid 16776] [evidence IEA]"	MGC112719; RGD1310116	MGC112719; RGD1310116
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_56090278-S	ILMN_276024	RPL23	NM_001007599.1	NM_001007599.1		29282	56090278	NM_001007599.1	Rpl23	NP_001007600.1	ILMN_1374916	50010	S	1	GGGGGACTCTTTCCGGACGCTCAAGATGTCGAAGCGAGGACGTGGTGGGT	10	-	86531056-86531072:86531516-86531528:86531529-86531548	10q31	"Rattus norvegicus ribosomal protein L23 (Rpl23), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]"	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]	The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence NAS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]	MGC72962	MGC72962
Synthase and synthetase -> Synthetase;Ligase -> Other ligase	Lipid, fatty acid and steroid metabolism -> Fatty acid metabolism;Coenzyme and prosthetic group metabolism -> Coenzyme metabolism	Rattus norvegicus	RefSeq	GI_12831226-S	ILMN_262531	AACS	NM_023104.1	NM_023104.1		65984	12831226	NM_023104.1	Aacs	NP_075592.1	ILMN_1353563	4060431	S	2886	CTCAGAGGAAAATGGCCGCGTGCTCCCTCCTAATAGTTCCGGGCTCTTTC	12	-	32207118-32207167	12q14	"Rattus norvegicus acetoacetyl-CoA synthetase (Aacs), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]"	"The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence IDA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the regulated release of insulin [goid 32024] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a oleate stimulus [goid 34201] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IDA]; The process whereby a relatively unspecialized cell acquires specialized features of a white adipocyte, an animal connective tissue cell involved in energy storage. White adipocytes have cytoplasmic lipids arranged in a unique vacuole [goid 50872] [evidence IEP]"	"Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of the reaction: ATP + acetoacetate + CoA = AMP + diphosphate + acetoacetyl-CoA [goid 30729] [evidence IDA]; Catalysis of the reaction: ATP + acetoacetate + CoA = AMP + diphosphate + acetoacetyl-CoA [goid 30729] [evidence NAS]; Catalysis of the reaction: ATP + acetoacetate + CoA = AMP + diphosphate + acetoacetyl-CoA [goid 30729] [evidence IEA]"
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_27690617-S	ILMN_49179	RGD1565159_PREDICTED	XM_227091.2	XM_227091.2		310365	109464361	XM_227091.2	RGD1565159_predicted	XP_227091.1	ILMN_1357992	2340717	S	454	ATGGAAAGGAGCCTGAGCTGCTGGAGCCCATGCCATACGAATTCATGGCC	2	-	53113347-53113396	2q16	"PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1565159_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62650490-S	ILMN_62233	MYCN	XM_234025.3	XM_234025.3		298894	62650490	XM_234025.3	Mycn	XP_234025.2	ILMN_1650532	150520	S	2034	CCCGCCTTTTGTATACGTCCTGGGTAATGAGAGGTGGCTCTCGGGCCAGT				6q14	"PREDICTED: Rattus norvegicus v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) (Mycn), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]"	"Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence ISS]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence IEA]"	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62646247-S	ILMN_267060	RGD1563354_PREDICTED	XM_001068317.1	XM_001068317.1		311592	109471211	XM_001068317.1	RGD1563354_predicted	XP_001068317.1	ILMN_1352874	6130577	S	3654	GGACCATCTTCCAGCTCCCGAAAACGCCAAGACGATGGGTGATTAGCCAC				3q42	"PREDICTED: Rattus norvegicus similar to hypothetical protein D630003M21 (predicted) (RGD1563354_predicted), mRNA."
Transcription factor -> Transcription cofactor;Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_34872287-S	ILMN_161840	LOC360801	XM_341072.1	XM_341072.1			34872287	XM_341072.1	LOC360801		ILMN_2039820	4850221	S	2237	GCTCTCGCTGGACTGAGGAAGAGATGGAGACAGCAAAGAAAGGTGGGCAG					"Rattus norvegicus similar to Nuclear receptor co-repressor 2 (N-CoR2) (Silencing mediator of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated co-repressor) (T3 receptor-associating factor) (TRAC)... (LOC360801), mRNA."
		Rattus norvegicus	RefSeq	GI_27710529-S	ILMN_60798	LOC297110	XM_238352.1	XM_238352.1		297110	27710529	XM_238352.1	LOC297110	XP_238352.1	ILMN_1349075	1050286	S	624	GAAGAGGAAGCGAGGGTCAGCACAGATGACAGACTCGGATCAACACCTGT					"PREDICTED: Rattus norvegicus hypothetical LOC297110 (LOC297110), mRNA."
Transcription factor -> Zinc finger transcription factor -> Other zinc finger transcription factor;Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription;Developmental processes -> Other developmental process;Developmental processes -> Segment specification	Rattus norvegicus	RefSeq	GI_62650473-S	ILMN_281369	OSR1_PREDICTED	XM_001072238.1	XM_001072238.1		298878	109479128	XM_001072238.1	Osr1_predicted	XP_001072238.1	ILMN_1353643	70465	S	1526	CGGCTCTCCTAGGACGCGGCTAAAACTCTTGGCCAAAGGGCGGTACTCAA				6q14	"PREDICTED: Rattus norvegicus odd-skipped related 1 (Drosophila) (predicted) (Osr1_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47577398-S	ILMN_298786	OLR448	NM_001000287.1	NM_001000287.1		295720	47577398	NM_001000287.1	Olr448	NP_001000287.1	ILMN_1370910	7000088	S	668	TCACCATCCTAAAGATTGGCTCTGCTGATGGGAGACGCAAAGCCTTCTCC	3	-	68882603-68882652	3q24	"Rattus norvegicus olfactory receptor 448 (Olr448), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr448	Olr448
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62651241-S	ILMN_273620	RGD1562505_PREDICTED	XM_001069823.1	XM_001069823.1		314443	109479976	XM_001069823.1	RGD1562505_predicted	XP_001069823.1	ILMN_1369821	3940369	S	1455	CTATCGGATGAGCAGACGGCGACGCTATGAAGGCCACAAGGTGGAAGGCT					"PREDICTED: Rattus norvegicus similar to pre-mRNA splicing factor-like (predicted) (RGD1562505_predicted), mRNA."
Select calcium binding protein -> Calmodulin related protein	Signal transduction -> Intracellular signaling cascade -> Calcium mediated signaling;Cell cycle;Cell proliferation and differentiation	Rattus norvegicus	RefSeq	GI_62663793	ILMN_69104	CALM4_PREDICTED	XM_344627.2	XM_344627.2		364774	62663793	XM_344627.2	Calm4_predicted	XP_344628.2	ILMN_1650060	4050079	S	763	GTCTTTGTCCCACAACCTACCCCATGCTGGACTTGAACCTGTGCACTGCC				17q12.3	"PREDICTED: Rattus norvegicus calmodulin 4 (predicted) (Calm4_predicted), mRNA."
Transcription factor -> Zinc finger transcription factor -> Other zinc finger transcription factor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_62660605-S	ILMN_276407	RGD1564150_PREDICTED	XM_001062122.1	XM_001062122.1		498390	109500791	XM_001062122.1	RGD1564150_predicted	XP_001062122.1	ILMN_1364462	5390180	S	3276	CCCTGCCCAGTGTGTGTTCAAGTGCTGGTTCTGTGGGCGGCTCTACGAAG				14q21	"PREDICTED: Rattus norvegicus similar to mKIAA1729 protein (predicted) (RGD1564150_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_56605791	ILMN_296576	TMEM106C	NM_001008358.1	NM_001008358.1		315286	56605791	NM_001008358.1	Tmem106c	NP_001008359.1	ILMN_1649927	670315	S	1286	ACAGAGTGACTAGTTTTCCCCCAAGGGTCTACTGAAGGGCTTGACGGACC	7	+	136674453-136674502	7q36	"Rattus norvegicus transmembrane protein 106C (Tmem106c), mRNA."	"The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"			MGC105614; RGD1311532	MGC105614; RGD1311532
Nucleic acid binding -> Nuclease	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62652308-S	ILMN_273626	POP1_PREDICTED	XM_001058648.1	XM_001058648.1		315045	109482110	XM_001058648.1	Pop1_predicted	XP_001058648.1	ILMN_1354438	1580132	S	2952	CACACTGCTCCAGGCCCCTCCTGGGCTTCGTGACACATGGAGATTTCTCT				7q22	"PREDICTED: Rattus norvegicus processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae) (predicted) (Pop1_predicted), mRNA."
Protease -> Cysteine protease	Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_62665095-S	ILMN_296146	USP38_PREDICTED	XM_001073885.1	XM_001073885.1		307764	109508703	XM_001073885.1	Usp38_predicted	XP_001073885.1	ILMN_1364643	1400176	S	3527	CCAATGGATTTGACGACAATGACCCACCAGGAAGCTGTGGGCCGACGGGT				19q11	"PREDICTED: Rattus norvegicus ubiquitin specific protease 38 (predicted) (Usp38_predicted), mRNA."
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_13592058-S	ILMN_263949	RPL22	NM_031104.1	NM_031104.1		81768	13592058	NM_031104.1	Rpl22	NP_112366.1	ILMN_1372480	50132	S	156	AGGTGAACGGGAAAGCTGGTAACCTTGGCGGAGGGGTTGTGACCATCGAG	5	+	169561811-169561860	5q36	"Rattus norvegicus ribosomal protein L22 (Rpl22), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]"	The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; The process whereby a precursor cell type acquires the specialized features of an alpha-beta T cell [goid 46632] [evidence ISS]	"Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]"
		Rattus norvegicus	RefSeq	GI_62662663-S	ILMN_51100	LOC306464	XM_224859.3	XM_224859.3		306464	62662663	XM_224859.3	LOC306464	XP_224859.3	ILMN_1371913	6860064	S	996	TAAGTAAGTCCTTTGATGGTGGCATCGGTGGCCTGGTCAGCTGTGCTCGG				16q11	"PREDICTED: Rattus norvegicus similar to myeloid leukemia factor 1 interacting protein (LOC306464), mRNA."
Cytoskeletal protein -> Actin family cytoskeletal protein -> Actin binding motor protein	Intracellular protein traffic -> General vesicle transport	Rattus norvegicus	RefSeq	GI_11559934-S	ILMN_275635	MYO5A	NM_022178.1	NM_022178.1		25017	11559934	NM_022178.1	Myo5a	NP_071514.1	ILMN_1350840	5340435	S	5250	CGGAAGCCATCTGCTCCATGTGCAACGCTCTGACCACAGCCCAGATTGTC	8	+	80026740-80026789	8q24	"Rattus norvegicus myosin Va (Myo5a), mRNA."	"Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence ISS]; The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes [goid 1750] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence ISS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence ISS]; A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes [goid 16459] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IDA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence TAS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IDA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence ISS]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]; Any complex of actin, myosin, and accessory proteins [goid 42641] [evidence ISS]; Any complex of actin, myosin, and accessory proteins [goid 42641] [evidence IEA]; The myosin part of any complex of actin, myosin, and accessory proteins [goid 42642] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IDA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]"	"The chemical reactions and pathways involving melanins, pigments largely of animal origin. High molecular weight polymers of indole quinone, they are irregular polymeric structures and are divided into three groups: allomelanins in the plant kingdom and eumelanins and phaeomelanins in the animal kingdom [goid 6582] [evidence ISS]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence ISS]; A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells [goid 6887] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [evidence IMP]; Any process that modulates the frequency, rate or extent of exocytosis [goid 17157] [evidence IMP]; Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins [goid 30048] [evidence IDA]; Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins [goid 30048] [evidence ISS]; Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins [goid 30048] [evidence IEA]; Movement of a vesicle along an actin filament, mediated by motor proteins [goid 30050] [evidence IMP]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence ISS]; The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin [goid 30073] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a melanocyte [goid 30318] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a melanocyte [goid 30318] [evidence IEA]; Any process that modulates the frequency, rate or extent of the activity of the IP3 receptor [goid 31585] [evidence ISS]; Any process that modulates the frequency, rate or extent of the activity of the IP3 receptor [goid 31585] [evidence IEA]; Self-propelled movement of a cell or organism from one location to another in a behavioral context; the aspect of locomotory behavior having to do with movement [goid 31987] [evidence ISS]; Self-propelled movement of a cell or organism from one location to another in a behavioral context; the aspect of locomotory behavior having to do with movement [goid 31987] [evidence IEA]; Any process by which a secretory granule is transported to, and/or maintained in, a specific location within the cell [goid 32252] [evidence IDA]; Any process by which a secretory granule is transported to, and/or maintained in, a specific location within the cell [goid 32252] [evidence ISS]; Any process by which a secretory granule is transported to, and/or maintained in, a specific location within the cell [goid 32252] [evidence IMP]; Any process by which a secretory granule is transported to, and/or maintained in, a specific location within the cell [goid 32252] [evidence IEA]; Any process by which a melanosome is transported to, and/or maintained in, a specific location within the cell [goid 32400] [evidence ISS]; Any process by which a melanosome is transported to, and/or maintained in, a specific location within the cell [goid 32400] [evidence IEA]; The directed movement of melanosomes into, out of, within or between cells [goid 32402] [evidence ISS]; The directed movement of melanosomes into, out of, within or between cells [goid 32402] [evidence IEA]; The chemical reactions and pathways resulting in the formation of melanins, pigments largely of animal origin. High molecular weight polymers of indole quinone, they are irregular polymeric structures and are divided into three groups: allomelanins in the plant kingdom and eumelanins and phaeomelanins in the animal kingdom [goid 42438] [evidence ISS]; The chemical reactions and pathways resulting in the formation of melanins, pigments largely of animal origin. High molecular weight polymers of indole quinone, they are irregular polymeric structures and are divided into three groups: allomelanins in the plant kingdom and eumelanins and phaeomelanins in the animal kingdom [goid 42438] [evidence IEA]; The process whose specific outcome is the progression of a tooth or teeth over time, from formation to the mature structure(s). A tooth is any hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food [goid 42476] [evidence ISS]; The process whose specific outcome is the progression of a tooth or teeth over time, from formation to the mature structure(s). A tooth is any hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food [goid 42476] [evidence IEA]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence ISS]; The process by which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier [goid 42552] [evidence IEA]; The growth phase of the hair cycle. Lasts, for example, about 3 to 6 years for human scalp hair [goid 42640] [evidence ISS]; The growth phase of the hair cycle. Lasts, for example, about 3 to 6 years for human scalp hair [goid 42640] [evidence IEA]; The chemical reactions and pathways resulting in the formation of long-chain fatty acids, aliphatic compounds having a terminal carboxyl group and with a chain length of C12-18 [goid 42759] [evidence ISS]; The chemical reactions and pathways resulting in the formation of long-chain fatty acids, aliphatic compounds having a terminal carboxyl group and with a chain length of C12-18 [goid 42759] [evidence IEA]; The deposition or aggregation of coloring matter in an organism, tissue or cell [goid 43473] [evidence ISS]; The deposition of coloring matter in an organism, tissue or cell, occurring during development [goid 48066] [evidence ISS]; The deposition of coloring matter in an organism, tissue or cell, occurring during development [goid 48066] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell) [goid 50808] [evidence IEA]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence ISS]; Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors [goid 50885] [evidence IEA]; Any process by which endoplasmic reticulum is transported to, and/or maintained in, a specific location within the cell [goid 51643] [evidence ISS]; Any process by which endoplasmic reticulum is transported to, and/or maintained in, a specific location within the cell [goid 51643] [evidence IEA]"	"Catalysis of movement along a microfilament, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 146] [evidence IDA]; Catalysis of movement along a microfilament, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 146] [evidence ISS]; Catalysis of movement along a microfilament, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP) [goid 146] [evidence IEA]; Interacting selectively with a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein [goid 149] [evidence IPI]; Interacting selectively with a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein [goid 149] [evidence IPI]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence ISS]; Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IMP]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence ISS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with the SNAP receptor syntaxin-1 [goid 17075] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) using energy from the hydrolysis of ATP [goid 43008] [evidence IPI]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence IPI]; Interacting selectively with the plus end of a microtubule [goid 51010] [evidence ISS]; Interacting selectively with the plus end of a microtubule [goid 51010] [evidence IEA]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IEA]"	D; Myh12; Dop	D; Myh12; Dop
Defense/immunity protein -> Major histocompatibility complex antigen	Immunity and defense -> T-cell mediated immunity -> MHCI-mediated immunity	Rattus norvegicus	RefSeq	GI_57012419-S	ILMN_297891	RT1-CE10	NM_001008833.1	NM_001008833.1		414792	57012419	NM_001008833.1	RT1-CE10	NP_001008833.1	ILMN_1358690	6100373	S	494	AGAAGACCCGGAGCAAGTGGGAGAGGGAAGGTGTTGCAGAGAGAAGCAGG	20	+	3469479-3469528	20p12	"Rattus norvegicus RT1 class I, CE10 (RT1-CE10), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]"	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]		MGC114586	MGC114586
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47577162	ILMN_269705	OLR341	NM_001001042.1	NM_001001042.1		405928	47577162	NM_001001042.1	Olr341	NP_001001042.1	ILMN_1372448	450092	S	121	CTAGGAATGATCCTGCTGATTGTCTTGGACTCTCGACTCCACACTCCCAT	1	-	216010398-216010447	1q43	"Rattus norvegicus olfactory receptor 341 (Olr341), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr341	Olr341
Cytoskeletal protein -> Microtubule family cytoskeletal protein -> Tubulin	Intracellular protein traffic;Cell cycle -> Mitosis -> Chromosome segregation;Cell structure and motility -> Cell structure;Cell structure and motility -> Cell motility	Rattus norvegicus	RefSeq	GI_62664564-S	ILMN_264936	TUBB6	NM_001025675.1	NM_001025675.1		307351	71043679	NM_001025675.1	Tubb6	NP_001020846.1	ILMN_1358531	2690093	S	1287	TGTCCGAGTACCAGCAGTACCAGGACGCCACAGTCAACGATGGGGAAGAG	18	+	63928951-63929000	18q12.1	"Rattus norvegicus tubulin, beta 6 (Tubb6), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]"	"Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins [goid 7018] [evidence IEA]; The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein [goid 51258] [evidence IEA]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]"	MGC116110; RGD1305887	MGC116110; RGD1305887
Cytoskeletal protein;Cell junction protein -> Other cell junction protein	Protein targeting and localization -> Asymmetric protein localization	Rattus norvegicus	RefSeq	GI_62658412-S	ILMN_264638	LNX2_PREDICTED	XM_001069634.1	XM_001069634.1		360761	109496550	XM_001069634.1	Lnx2_predicted	XP_001069634.1	ILMN_1354119	2970575	S	1733	CCTGGCTCGAGACGGCAGGATCAAGAGAGGTGACGTGTTGCTGAACATCA				12p11	"PREDICTED: Rattus norvegicus ligand of numb-protein X 2 (predicted) (Lnx2_predicted), mRNA."
Cytoskeletal protein -> Microtubule family cytoskeletal protein -> Tubulin	Intracellular protein traffic;Cell cycle -> Mitosis -> Chromosome segregation;Cell structure and motility -> Cell structure;Cell structure and motility -> Cell motility	Rattus norvegicus	RefSeq	GI_62663791-S	ILMN_271014	TUBAL3_PREDICTED	XM_001068605.1	XM_001068605.1		291287	109506124	XM_001068605.1	Tubal3_predicted	XP_001068605.1	ILMN_1361459	4610068	S	1917	CTGGTACATCACAGAAGGCATGGAGCTTGGGGAGTTTGAAGAGGCCAGGG				17q12.3	"PREDICTED: Rattus norvegicus tubulin, alpha-like 3 (predicted) (Tubal3_predicted), mRNA."
Protease -> Metalloprotease	Protein metabolism and modification -> Proteolysis;Signal transduction -> Cell communication -> Cell adhesion-mediated signaling	Rattus norvegicus	RefSeq	GI_62652983-S	ILMN_289756	ADAMTS20_PREDICTED	XM_001058144.1	XM_001058144.1		315263	109482782	XM_001058144.1	Adamts20_predicted	XP_001058144.1	ILMN_1353099	2510450	S	4783	GAGGGCAGACTGTGCGTGTGAAAATGACTACCCACCTGCCGGATACACTG					"PREDICTED: Rattus norvegicus a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20 (predicted) (Adamts20_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62649038-S	ILMN_53925	LOC500470	XM_575834.1	XM_575834.1		500470	62649038	XM_575834.1	LOC500470	XP_575834.1	ILMN_1357435	4590341	S	1249	CCCACCAGGGATTGCCCCTTTGAATGTAATCGATGTGGTAAGGCCTTTAG					"PREDICTED: Rattus norvegicus similar to Zink-finger protein 37 (LOC500470), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47577772-S	ILMN_276028	OLR629	NM_001001058.1	NM_001001058.1		405946	47577772	NM_001001058.1	Olr629	NP_001001058.1	ILMN_1367196	4760377	S	571	TACAGAGTTGGACTTCTGGTGGTTGCCAATTCAGGCATGATGGGACTGGT	3	-	72306202-72306251	3q24	"Rattus norvegicus olfactory receptor 629 (Olr629), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr629	Olr629
Oxidoreductase -> Oxidase	Electron transport -> Other pathways of electron transport;Immunity and defense -> Granulocyte-mediated immunity	Rattus norvegicus	RefSeq	GI_16758287-S	ILMN_284517	NOX4	NM_053524.1	NM_053524.1		85431	16758287	NM_053524.1	Nox4	NP_445976.1	ILMN_1369376	6660603	S	1930	AGTGTGGCAAAAATGACATGGTTAATCTGCAAGCCAAAGGGGCCCTGAAG	1	+	143603308-143603357	1q32	"Rattus norvegicus NADPH oxidase 4 (Nox4), mRNA."	"The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A enzyme complex of which the core is a heterodimer composed of a light (alpha) and heavy (beta) chain, and requires several other water-soluble proteins of cytosolic origin for activity. Functions in superoxide generation by the NADPH-dependent reduction of O2 [goid 43020] [evidence IDA]"	"The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence ISS]; The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form [goid 902] [evidence ISS]; The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH) [goid 6800] [evidence ISS]; The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH) [goid 6800] [evidence ISS]; The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species [goid 6801] [evidence IMP]; The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species [goid 6801] [evidence IDA]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence ISS]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence ISS]; The process whereby a relatively unspecialized cell acquires the specialized structural and/or functional features of a cell that will form part of the cardiac organ of an individual [goid 35051] [evidence ISS]; The enzymatic generation of superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species, by a cell in response to environmental stress, thereby mediating the activation of various stress-inducible signaling pathways [goid 42554] [evidence ISS]; The enzymatic generation of superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species, by a cell in response to environmental stress, thereby mediating the activation of various stress-inducible signaling pathways [goid 42554] [evidence ISS]; The process by which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products [goid 45453] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence ISS]"	"Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Catalysis of the reaction: NAD(P)H + H+ + O2 = NAD(P)+ + H2O2 [goid 16174] [evidence IDA]; Catalysis of the reaction: NAD(P)H + O2 = NAD(P)H + O2- [goid 16175] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Interacting selectively with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes [goid 50660] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces an oxygen molecule [goid 50664] [evidence IDA]"
Transporter -> Cation transporter;Transporter -> Other transporter	Signal transduction -> Cell communication;Transport -> Ion transport -> Cation transport	Rattus norvegicus	RefSeq	GI_25742809-S	ILMN_65656	SLC8A1	NM_019268.1	NM_019268.1		29715	25742809	NM_019268.1	Slc8a1	NP_062141.1	ILMN_1367372	2650075	S	2791	GCTTTCATCAATGTGGGGGTGCTGCTGTATCGGCGGAGGCCAGAAATAGG				6q12	"Rattus norvegicus solute carrier family 8 (sodium/calcium exchanger), member 1 (Slc8a1), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IPI]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence IEA]; Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane [goid 30315] [evidence ISS]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; Any process that modulates the extent of heart contraction, changing the force with which blood is propelled [goid 2026] [evidence IEA]; Any process that modulates the extent of heart contraction, changing the force with which blood is propelled [goid 2026] [evidence ISS]; Any process that modulates the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of, within or between cells [goid 2028] [evidence IMP]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence TAS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEP]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus [goid 33198] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IEP]; Any process that modulates the frequency, rate or extent of the directed movement of calcium ions into, out of, within or between cells [goid 51924] [evidence IMP]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment [goid 7154] [evidence IEA]"	"Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + Na+(out) = Ca2+(out) + Na+(in) [goid 5432] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + Na+(out) = Ca2+(out) + Na+(in) [goid 5432] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + Na+(out) = Ca2+(out) + Na+(in) [goid 5432] [evidence IMP]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + Na+(out) = Ca2+(out) + Na+(in) [goid 5432] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + Na+(out) = Ca2+(out) + Na+(in) [goid 5432] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA]; Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock [goid 31072] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]"	Ncx1; Ncx	Ncx1; Ncx
		Rattus norvegicus	RefSeq	GI_62648384-S	ILMN_66030	LOC502888	XM_578389.1	XM_578389.1		502888	62648384	XM_578389.1	LOC502888	XP_578389.1	ILMN_1362529	4850706	S	1139	GGGTCATAAGCAGGGGAATACAGAAAGGGCCGTGGTCATTGCATCAGGGG					"PREDICTED: Rattus norvegicus similar to adaptin-ear-binding coat-associated protein 1 (LOC502888), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62641964-S	ILMN_67223	TNFRSF26_PREDICTED	XM_341968.2	XM_341968.2		361685	62641964	XM_341968.2	Tnfrsf26_predicted	XP_341969.2	ILMN_1351130	360441	S	610	GAAGAGCCCTAAATGATGTCAACGACACCGTCTCAATTCCGCGCCAACCT				1q41	"PREDICTED: Rattus norvegicus tumor necrosis factor receptor superfamily, member 26 (predicted) (Tnfrsf26_predicted), mRNA."
Cytoskeletal protein -> Microtubule family cytoskeletal protein -> Non-motor microtubule binding protein	Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_62649641-A	ILMN_288243	TEKT2	NM_001011977.1	NM_001011977.1		298532	58865521	NM_001011977.1	Tekt2	NP_001011977.1	ILMN_1376431	2450524	S	1310	TTGGACACCAAGTGTATGGACATCCGACGCAAGCTGACCGTGCCGGCTGA	5	-	145691308-145691357	5q36	"Rattus norvegicus tektin 2 (testicular) (Tekt2), mRNA."	"Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]"	"A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence IEA]; Cell motility due to movement of cilia or flagella [goid 1539] [evidence ISS]; Cell motility due to movement of cilia or flagella [goid 1539] [evidence IEA]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence ISS]; Any process involved in the controlled movement of a sperm cell [goid 30317] [evidence IEA]"	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]
Transcription factor -> Transcription cofactor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription elongation;Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_62662362-S	ILMN_267753	SLC35E1_PREDICTED	XM_001067877.1	XM_001067877.1		306328	109503908	XM_001067877.1	Slc35e1_predicted	XP_001067877.1	ILMN_1349599	6100128	S	1842	CCACTTTATGGCTGAGTACCTGAAGCAGGAGGAGAGCAGTCGGCAAGGGG				16p14	"PREDICTED: Rattus norvegicus solute carrier family 35, member E1 (predicted) (Slc35e1_predicted), mRNA."
Transferase -> Transaminase	Amino acid metabolism	Rattus norvegicus	RefSeq	GI_13470095-S	ILMN_275890	AGXT	NM_030656.1	NM_030656.1		24792	13470095	NM_030656.1	Agxt	NP_085914.1	ILMN_1353055	2850280	S	1378	TCCTGGAGGGGCTGGGAATATAGCAGGAACGAGAAGACTGTGCAAGCCCT	9	+	92421858-92421907	9q36	"Rattus norvegicus alanine-glyoxylate aminotransferase (Agxt), mRNA."	"A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [pmid 7813517] [evidence TAS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [pmid 14561759] [evidence IDA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [pmid 7813517] [evidence TAS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [pmid 14561759] [evidence IDA]"	"The process of directing proteins towards the peroxisome using signals contained within the protein [goid 6625] [evidence ISS]; The process of directing proteins towards the peroxisome using signals contained within the protein [goid 6625] [evidence IEA]; The chemical reactions and pathways resulting in the formation of glycine by the transamination of glyoxylate [goid 19265] [evidence IDA]; The chemical reactions and pathways resulting in the formation of pyruvate, 2-oxopropanoate [goid 42866] [evidence IDA]; The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH [goid 46487] [evidence ISS]; The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH [goid 46487] [evidence IEA]; The regulated release of oxalic acid, ethanedioic acid, by a cell or group of cells [goid 46724] [evidence ISS]; The regulated release of oxalic acid, ethanedioic acid, by a cell or group of cells [goid 46724] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus [goid 51591] [evidence IDA]; The process of directing proteins towards the peroxisome using signals contained within the protein [goid 6625] [evidence IEA]; The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH [goid 46487] [evidence IEA]; The regulated release of oxalic acid, ethanedioic acid, by a cell or group of cells [goid 46724] [evidence IEA]; The process of directing proteins towards the peroxisome using signals contained within the protein [goid 6625] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH [goid 46487] [evidence IEA]; The regulated release of oxalic acid, ethanedioic acid, by a cell or group of cells [goid 46724] [evidence IEA]"	"Catalysis of the reaction: L-serine + pyruvate = 3-hydroxypyruvate + L-alanine [goid 4760] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the reaction: L-alanine + glyoxylate = pyruvate + glycine [goid 8453] [evidence ISS]; Catalysis of the reaction: L-alanine + glyoxylate = pyruvate + glycine [goid 8453] [evidence IMP]; Catalysis of the reaction: L-alanine + glyoxylate = pyruvate + glycine [goid 8453] [evidence IDA]; Catalysis of the reaction: L-alanine + glyoxylate = pyruvate + glycine [goid 8453] [evidence IEA]; Interacting selectively with an amino acid, organic acids containing one or more amino substituents [goid 16597] [evidence IDA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence ISS]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the reaction: L-alanine + glyoxylate = pyruvate + glycine [goid 8453] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Catalysis of the reaction: L-serine + pyruvate = 3-hydroxypyruvate + L-alanine [goid 4760] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the reaction: L-alanine + glyoxylate = pyruvate + glycine [goid 8453] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]"	Spat	Spat
		Rattus norvegicus	RefSeq	GI_62656633-I	ILMN_60541	RNF135_PREDICTED	XM_573156.1	XM_573156.1		303350	62656633	XM_573156.1	Rnf135_predicted	XP_573156.1	ILMN_1375546	3290494	S	8	CCTGAACAGAATTCAGCAGCGACGGGCACTTTTAGAGGTTGGGGGAGAGC				10q26	"PREDICTED: Rattus norvegicus ring finger protein 135 (predicted) (Rnf135_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62638566-S	ILMN_55997	LOC499026	XM_579902.1	XM_579902.1		499026	62638566	XM_579902.1	LOC499026	XP_579902.1	ILMN_1356746	2190463	S	380	ACTCCTCTGTCCAAGGAACTGCACAGTCCAAACAACACTATGATTGCAGG					"PREDICTED: Rattus norvegicus LOC499026 (LOC499026), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47577968-S	ILMN_286359	OLR1107	NM_001000424.1	NM_001000424.1		300202	47577968	NM_001000424.1	Olr1107	NP_001000424.1	ILMN_1355441	2190114	S	647	TCTCCTATGCCCGGATTGTCTCCGCCATCTTGAGCATCAGTTCCACCACC	7	+	137164424-137164473	7q36	"Rattus norvegicus olfactory receptor 1107 (Olr1107), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1107	Olr1107
		Rattus norvegicus	RefSeq	GI_47577226-S	ILMN_265660	OLR734_PREDICTED	XM_001077615.1	XM_001077615.1		404809	109470284	XM_001077615.1	Olr734_predicted	XP_001077615.1	ILMN_1367566	1050358	S	548	CGAGGCGTTCTGATACCCTGCCTGTAGACAAGATGATAGCTGTGTTCTAC				3q24	"PREDICTED: Rattus norvegicus olfactory receptor 734 (predicted) (Olr734_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_8392982-S	ILMN_272138	BGN	XM_001057996.1	XM_001057996.1		25181	109462351	XM_001057996.1	Bgn	XP_001057996.1	ILMN_2040208	5900477	S	2293	CCACCCCGAACCAGTTTGCATTGGCCCCTGCCCTCTCCCCAAGATGGCTA				Xq37	"PREDICTED: Rattus norvegicus biglycan (Bgn), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence IEA]; Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell [goid 30133] [evidence ISS]"	The reorganization or renovation of existing blood vessels [goid 1974] [evidence IEP]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]
Nucleic acid binding -> Other RNA-binding protein	Nucleoside, nucleotide and nucleic acid metabolism -> Pre-mRNA processing -> mRNA polyadenylation;Nucleoside, nucleotide and nucleic acid metabolism -> Pre-mRNA processing -> mRNA end-processing and stability	Rattus norvegicus	RefSeq	GI_62649594-S	ILMN_60250	PABPC4_PREDICTED	XM_216517.3	XM_216517.3		298510	62649594	XM_216517.3	Pabpc4_predicted	XP_216517.2	ILMN_1372583	4060687	S	2443	ACCAGAAGAGTCAAAAGCCAAATAACCCCTCACGGCATTCAGCTGAGGTC				5q36	"PREDICTED: Rattus norvegicus poly A binding protein, cytoplasmic 4 (predicted) (Pabpc4_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62639062-S	ILMN_58283	RGD1564549_PREDICTED	XM_214831.4	XM_214831.4		292654	109458247	XM_214831.4	RGD1564549_predicted	XP_214831.2	ILMN_1357240	3850731	S	754	AGCAGGGCTGTGGGGACTGGCTGGGCCTGATGACTGGGACATTAAAACCT	1	+	76718895-76718944	1q21	"PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20512 (predicted) (RGD1564549_predicted), mRNA."
Nucleic acid binding -> Nuclease -> Exodeoxyribonuclease;Transferase	Nucleoside, nucleotide and nucleic acid metabolism -> DNA metabolism -> DNA replication;Cell cycle -> DNA replication;Nucleoside, nucleotide and nucleic acid metabolism -> DNA metabolism -> DNA replication;Cell cycle -> DNA replication	Rattus norvegicus	RefSeq	GI_16758291-S	ILMN_301078	POLG	NM_053528.1	NM_053528.1		85472	16758291	NM_053528.1	Polg	NP_445980.1	ILMN_1368767	5080139	S	3417	CATGTTTGCCTACAAGCTGGGTCTGAATGACCTGCCCCAGTCAGTTGCCT	1	-	135197651-135197700	1q31	"Rattus norvegicus polymerase (DNA directed), gamma (Polg), mRNA."	"A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; A DNA polymerase complex consisting of a large subunit, responsible for the catalytic activities, and a small accessory subunit. Functions in the replication and repair of mitochondrial DNA [goid 5760] [evidence IDA]; A DNA polymerase complex consisting of a large subunit, responsible for the catalytic activities, and a small accessory subunit. Functions in the replication and repair of mitochondrial DNA [goid 5760] [evidence IEA]"	"The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The process whereby new strands of DNA are synthesized in the mitochondrion [goid 6264] [evidence ISS]; Repair of the damaged strand by the combined action of an apurinic endouclease that degrades a few bases on the damaged strand and a polymerase that synthesizes a 'patch' in the 5' to 3' direction, using the undamaged strand as a template [goid 6287] [evidence ISS]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence ISS]"	"Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IDA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence IEA]; Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer [goid 3887] [evidence ISS]; Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end [goid 4527] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a nucleotidyl group to a reactant [goid 16779] [evidence IEA]"
		Rattus norvegicus	RefSeq	GI_62643324-S	ILMN_65312	LOC499591	XM_574917.1	XM_574917.1		499591	62643324	XM_574917.1	LOC499591	XP_574917.1	ILMN_1349392	3780167	S	4920	AGTGAGAGAGCCACAGGGCATCAATCAGGTACCAAGATCAGCCACATGGC					"PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC499591), mRNA."
Hydrolase	Sensory perception -> Vision;Developmental processes	Rattus norvegicus	RefSeq	GI_62648642-S	ILMN_56572	LOC502935	XM_578437.1	XM_578437.1		502935	62648642	XM_578437.1	LOC502935	XP_578437.1	ILMN_1364276	4010253	S	2075	AGCATCATCAGGCTGGGTTGGCTGCCTGGCTGTCACAGTCTCTGAAATTG				5q11	"PREDICTED: Rattus norvegicus similar to eyes absent 1 isoform c (LOC502935), mRNA."
Isomerase -> Other isomerase	Protein metabolism and modification -> Protein folding	Rattus norvegicus	RefSeq	GI_55926213-S	ILMN_301546	FKBPL	NM_001002818.2	NM_001002818.2		406168	55926213	NM_001002818.2	Fkbpl	NP_001002818.1	ILMN_1370814	4200037	S	1136	AGCAGTAGATCCCAAAAACCGTGCCGCGAAAGAGGAGCTGGGGAAGGTGG	20	-	4201193-4201242	20p12	"Rattus norvegicus FK506 binding protein-like (Fkbpl), mRNA."		The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]	"The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62665629-A	ILMN_286940	LY6G6F	NM_001003691.1	NM_001003691.1		309609	51100975	NM_001003691.1	Ly6g6f	NP_001003691.1	ILMN_1376620	6770026	S	750	GATGCTGTTGTTCGCAGCAGGCCAAGGGGTCACCATCATAGCCCTCAGCA	20	+	3805676-3805725	20p12	"Rattus norvegicus lymphocyte antigen 6 complex, locus G6F (Ly6g6f), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"			G6f	G6f
Signaling molecule -> Peptide hormone	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Developmental processes;Cell proliferation and differentiation	Rattus norvegicus	RefSeq	GI_13786133-S	ILMN_287635	PRL3C1	NM_031316.1	NM_031316.1		58937	13786133	NM_031316.1	Prl3c1	NP_112606.1	ILMN_1369785	3990131	S	388	CTGCAGTGTTGACTCATTTGGGCTCCTATGATGGTATGATGGCAAGAGCC	17	-	44379214-44379263	17p11	"Rattus norvegicus Prolactin family 3, subfamily c, member 1 (Prl3c1), mRNA."	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		"The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence TAS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]"	Prlpi; Prlpj	Prlpi; Prlpj
		Rattus norvegicus	RefSeq	GI_34860674-S	ILMN_56844	LOC362266	XM_342573.1	XM_342573.1		362266	34860674	XM_342573.1	LOC362266	XP_342574.1	ILMN_1375132	3990601	S	374	GGAACAAGCATACGCCAAGGTGGCTCAGATTCCTAAACTTCTCGACCAGG					"PREDICTED: Rattus norvegicus similar to Csr1 (LOC362266), mRNA."
Transcription factor	Developmental processes	Rattus norvegicus	RefSeq	GI_25742640-S	ILMN_301715	GAS7	NM_053484.1	NM_053484.1		85246	25742640	NM_053484.1	Gas7	NP_445936.1	ILMN_1356585	1990463	S	5943	CCCTGGGGAAAGAGATACCCAGAAGCACCCCCTTACAACCTGAGCACATG				10q24	"Rattus norvegicus growth arrest specific 7 (Gas7), mRNA."	"Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork [goid 1726] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane [goid 5884] [evidence ISS]"	"The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence ISS]; Assembly of actin filaments by the addition of actin monomers to a filament [goid 30041] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence ISS]; The process by which the anatomical structures of neurites are generated and organized. Morphogenesis pertains to the creation of form. A neurite is any process extending from a neural cell, such as axons or dendrites [goid 48812] [evidence ISS]; The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness [goid 51017] [evidence ISS]"	"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62639339-S	ILMN_50252	RGD1308055_PREDICTED	XM_218484.4	XM_218484.4		308496	109458507	XM_218484.4	RGD1308055_predicted	XP_218484.4	ILMN_1366639	4540347	S	1525	GCACCCCCAGGCTTGTCCTCTTAGGACCGAAACCCAGAACCTGGACTGAT	1	+	85383156-85383179:85383180-85383205	1q21	"PREDICTED: Rattus norvegicus similar to T-cell activation NFKB-like protein (predicted) (RGD1308055_predicted), mRNA."
Protease -> Cysteine protease	Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_62663145-S	ILMN_283218	MGC114246	NM_001017509.1	NM_001017509.1		498688	62945373	NM_001017509.1	MGC114246	NP_001017509.1	ILMN_1356365	6350020	S	671	GGCGGTCTTCAGTCCGAGGCAACATATCCATATGAAGGGAAAGATGGACC	17	+	9277983-9278024:9278479-9278486	17p14	"Rattus norvegicus similar to cathepsin R (MGC114246), mRNA."		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	"Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62645797-S	ILMN_53202	RGD1562702_PREDICTED	XM_575227.2	XM_575227.2		499882	109468746	XM_575227.2	RGD1562702_predicted	XP_575227.1	ILMN_1373167	2640253	S	1598	GCTGTCAAACTTGGAAGATTTTAAACCTACCCAGAAGTCCACCTGGGTGC	3	+	112980737-112980786	3q36	"PREDICTED: Rattus norvegicus similar to CREBBP/EP300 inhibitory protein 1 (predicted) (RGD1562702_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_38454209-S	ILMN_278873	COMMD3	XM_001073695.1	XM_001073695.1		291339	109506212	XM_001073695.1	Commd3	XP_001073695.1	ILMN_1360747	4010131	S	887	AACTTGGGGAAGCTGATGACCCAGGAGCCTAGAGGAAAACCAGACGCGCC				17q12.3	"PREDICTED: Rattus norvegicus COMM domain containing 3 (Commd3), mRNA."			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47577554-S	ILMN_300035	OLR513	NM_001000313.1	NM_001000313.1		295766	47577554	NM_001000313.1	Olr513	NP_001000313.1	ILMN_1353888	4480193	S	878	GGAACAAGGATGTGAAAGATGCTAGGCAGAGGATATGGAAGAAGATGTGC	3	-	69803670-69803719	3q24	"Rattus norvegicus olfactory receptor 513 (Olr513), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr3-69700969-69700034_ORF; Olr513	ratchr3-69700969-69700034_ORF; Olr513
Protease -> Serine protease	Protein metabolism and modification -> Proteolysis;Immunity and defense;Developmental processes -> Gametogenesis -> Spermatogenesis and motility	Rattus norvegicus	RefSeq	GI_31342208-S	ILMN_270336	TPSG1	NM_175593.2	NM_175593.2		302990	31342208	NM_175593.2	Tpsg1	NP_783183.1	ILMN_1367793	5670504	S	723	TGACCGCCCTGGCGTCTATGCTCGGGTTACTGCCTATGTAAACTGGATCC	10	+	14621127-14621176	10q12	"Rattus norvegicus tryptase gamma 1 (Tpsg1), mRNA."		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	"Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]"
Receptor -> Protein kinase receptor -> Serine/threonine protein kinase receptor;Kinase -> Protein kinase -> Serine/threonine protein kinase receptor	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62655209-S	ILMN_49708	STK36_PREDICTED	XM_217435.4	XM_217435.4		301516	109486155	XM_217435.4	Stk36_predicted	XP_217435.4	ILMN_1351272	4050170	S	3941	TAAAGTGCCAAGTACCCCAGCGGCTCCTAGAAATGGCGTGTGGAGACCCT	9	+	73975711-73975760	9q33	"PREDICTED: Rattus norvegicus serine/threonine kinase 36 (fused homolog, Drosophila) (predicted) (Stk36_predicted), mRNA."
Receptor -> Other receptor;Phosphatase -> Protein phosphatase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Homeostasis -> Glucose homeostasis	Rattus norvegicus	RefSeq	GI_13928817-S	ILMN_288414	PTPRN2	NM_031600.1	NM_031600.1		29714	13928817	NM_031600.1	Ptprn2	NP_113788.1	ILMN_1351681	3190692	S	4928	CAGCTCAAGCTCTGGTGACAGGAACGGATGTAATTGGGAGCAAGGCTTCC	6	+	144548839-144548888	6q33	"Rattus norvegicus protein tyrosine phosphatase, receptor type, N polypeptide 2 (Ptprn2), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence ISS]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence IEA]"	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	"Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_56090434-S	ILMN_296417	RGD1359634	NM_001007708.1	NM_001007708.1		315126	56090434	NM_001007708.1	RGD1359634	NP_001007709.1	ILMN_1368668	3140605	S	1052	ATGAGACAGTACCCTAGACGCTGCCCAGGGATGCAGAGCCTCAGTGGGAT	7	-	117115428-117115477	7q34	"Rattus norvegicus similar to RIKEN cDNA 1700088E04 (RGD1359634), mRNA."				MGC93972	MGC93972
Nucleic acid binding -> Nuclease -> Endodeoxyribonuclease	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62650481-S	ILMN_282163	RGD1559792_PREDICTED	XM_001072749.1	XM_001072749.1		298884	109479138	XM_001072749.1	RGD1559792_predicted	XP_001072749.1	ILMN_1360538	7100315	S	2872	AGGACTCTGCTGACTGCTGGGAAAGTCCTCTCCCTTTACGCCAGAGGTTA				6q14	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5830483C08 gene (predicted) (RGD1559792_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62645419-S	ILMN_263933	TP53I11_PREDICTED	XM_001070488.1	XM_001070488.1		311209	109470262	XM_001070488.1	Tp53i11_predicted	XP_001070488.1	ILMN_1372071	1980138	S	2579	TGGCCTCCGGGACACACTAAGCTTGGAAGGAGGCAGCAATGGAGACAGGA				3q24	"PREDICTED: Rattus norvegicus tumor protein p53 inducible protein 11 (predicted), transcript variant 1 (Tp53i11_predicted), mRNA."
Hydrolase -> Esterase	Lipid, fatty acid and steroid metabolism -> Fatty acid metabolism;Other metabolism	Rattus norvegicus	RefSeq	GI_62078648-S	ILMN_294817	ACOT9	NM_001013960.1	NM_001013960.1		302640	62078648	NM_001013960.1	Acot9	NP_001013982.1	ILMN_1370027	6380068	S	1393	CTGTGGAGCCCTAGGAAAAATCTCACTTGTTGCAAATCAGCACTTCAGGC	X	-	61548498-61548534:61548535-61548547	Xq22	"Rattus norvegicus acyl-CoA thioesterase 9 (Acot9), mRNA."				Acot9; Acate2	Acot9; Acate2
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation	Rattus norvegicus	RefSeq	GI_62665732-S	ILMN_296045	SRPK1	NM_001025726.1	NM_001025726.1		361811	71043649	NM_001025726.1	Srpk1	NP_001020897.1	ILMN_1351516	870138	S	1889	GCCTTGGGGTCTTCTGGAGGTTCTGGTGGAGAAGTATGAGTGGCCTCAGG	20	-	6829766-6829815	20p12	"Rattus norvegicus SFRS protein kinase 1 (Srpk1), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]"	"The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process by which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets [goid 7059] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence ISS]; Any process that modulates the frequency, rate or extent of mRNA processing, those processes involved in the conversion of a primary mRNA transcript into a mature mRNA prior to its translation into polypeptide [goid 50684] [evidence ISS]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]"	MGC116186	MGC116186
Oxidoreductase	Electron transport -> Oxidative phosphorylation	Rattus norvegicus	RefSeq	GI_62652472-S	ILMN_48113	NDUFB9_PREDICTED	XM_216929.4	XM_216929.4		299954	109480809	XM_216929.4	Ndufb9_predicted	XP_216929.3	ILMN_1364409	2630133	S	554	GGTGGCATATTGTGACCAGACCTCGGGAACGGCCCACATAGAGACAGGCA	7	-	95949392-95949401:95949402-95949441	7q33	"PREDICTED: Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 (predicted) (Ndufb9_predicted), mRNA."
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_62665093-S	ILMN_54131	LOC364985	XM_344752.2	XM_344752.2		364985	62665093	XM_344752.2	LOC364985	XP_344753.2	ILMN_1359381	6450725	S	485	GTGCAGGCCCAATAGGAAAGGCTTCTGCCAGTGTGAAGACAGACGGACTG				19q11	"PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (LOC364985), mRNA."
Oxidoreductase -> Oxygenase	Coenzyme and prosthetic group metabolism -> Vitamin metabolism -> Vitamin biosynthesis;Sensory perception -> Vision	Rattus norvegicus	RefSeq	GI_16758331-S	ILMN_300828	RPE65	NM_053562.1	NM_053562.1		89826	16758331	NM_053562.1	Rpe65	NP_446014.1	ILMN_1361431	6760273	S	1487	GAAGAAGATGATGGTGTAGTTCTGAGTGTGGTGGTGAGTCCTGGGGCAGG	2	+	257878867-257878916	2q45	"Rattus norvegicus retinal pigment epithelium 65 (Rpe65), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]"	"The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight [goid 1654] [evidence NAS]; Any process that modulates the frequency, rate or extent of rhodopsin gene expression. This includes transcriptional, translational, or posttranslational regulation [goid 7468] [evidence ISS]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence IEA]; The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image [goid 7601] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence ISS]; The chemical reactions and pathways involving retinal, a compound that plays an important role in the visual process in most vertebrates. In the retina, retinal combines with opsins to form visual pigments. Retinal is one of the forms of vitamin A [goid 42574] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]"
Transporter -> Other transporter	Transport -> Small molecule transport	Rattus norvegicus	RefSeq	GI_47087112-S	ILMN_286064	SLC44A4	NM_212541.1	NM_212541.1		294255	47087112	NM_212541.1	Slc44a4	NP_997706.1	ILMN_2039744	6200719	S	1798	CTTTGGGAAGCTGCTGGTGGTCGGAGGTGTCGGTGTTCTGTCCTTCTTCT	20	-	4006932-4006951:4007055-4007084	20p12	"Rattus norvegicus solute carrier family 44, member 4 (Slc44a4), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"			Ng22	Ng22
		Rattus norvegicus	RefSeq	GI_62649176-S	ILMN_61253	LOC500488	XM_580072.1	XM_580072.1		500488	62649176	XM_580072.1	LOC500488	XP_580072.1	ILMN_1359785	510670	S	1400	ACAGGTGGCATGTACCCTGGCTGAGGTAACATTAGTCATTGCTCTGGGGG					"PREDICTED: Rattus norvegicus LOC500488 (LOC500488), mRNA."
		Rattus norvegicus	RefSeq	GI_62660963-S	ILMN_66993	LOC501936	XM_577362.1	XM_577362.1		501936	62660963	XM_577362.1	LOC501936	XP_577362.1	ILMN_1361938	770471	S	91	CCAACAAGCCTGCGGAAGGGCGTTATCCTGGGGATCTAAGAGTGGAAACT					"PREDICTED: Rattus norvegicus similar to apurinic/apyrimidinic endonuclease 2 (LOC501936), mRNA."
Oxidoreductase -> Oxygenase	Electron transport;Other metabolism	Rattus norvegicus	RefSeq	GI_62659604-S	ILMN_270401	RGD1559491_PREDICTED	XM_222818.3	XM_222818.3		304922	62659604	XM_222818.3	RGD1559491_predicted	XP_222818.2	ILMN_1373525	4610300	S	1588	CCAATGGAAGCGGACGGTGAAGCCAACCAGAACAAGGGCTGTCGGCGAAG	13	-	78609968-78610017	13q22	"PREDICTED: Rattus norvegicus similar to Putative dimethylaniline monooxygenase [N-oxide-forming] 6 (Flavin-containing monooxygenase 6) (predicted) (RGD1559491_predicted), mRNA."
Kinase -> Protein kinase;Transferase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Phosphate metabolism;Other metabolism	Rattus norvegicus	RefSeq	GI_62651076-S	ILMN_68814	NEK9_PREDICTED	XM_216755.4	XM_216755.4		299204	109478521	XM_216755.4	Nek9_predicted	XP_216755.4	ILMN_1371075	5290129	S	2744	CCCGGCTGAATCCTGCAGTGCCGTGTGTTGGGAAAGCATTGACCTCTCCT	6	-	109349963-109350012	6q31	"PREDICTED: Rattus norvegicus NIMA (never in mitosis gene a)- related kinase 9 (predicted) (Nek9_predicted), mRNA."
Nucleic acid binding -> RNA methyltransferase;Transferase -> Methyltransferase -> RNA methyltransferase;Nucleic acid binding -> RNA methyltransferase;Transferase -> Methyltransferase -> RNA methyltransferase	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62079078-S	ILMN_289538	RGD1311265	NM_001014173.1	NM_001014173.1		361976	62079078	NM_001014173.1	RGD1311265	NP_001014195.1	ILMN_1367830	5340133	S	1670	TCTTGCTGGCCCCACTGGTAGAGACATTGATTCTGCTGGACCGGATGCTC	2	-	180002304-180002353	2q34	"Rattus norvegicus similar to CGI-41 protein (RGD1311265), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"
		Rattus norvegicus	RefSeq	GI_62661213-S	ILMN_67093	LOC501962	XM_577390.1	XM_577390.1		501962	62661213	XM_577390.1	LOC501962	XP_577390.1	ILMN_1354258	380369	S	854	GGTCCAGCTCCACCAGTGCACCTTAGACTCTCCTGTGTGGTGGGCACATA					"PREDICTED: Rattus norvegicus similar to High mobility group protein 1 (HMG-1) (Amphoterin) (Heparin-binding protein p30) (LOC501962), mRNA."
Miscellaneous function -> Other miscellaneous function protein	Oncogenesis	Rattus norvegicus	RefSeq	GI_52486809-A	ILMN_295349	TACC2	NM_001004418.1	NM_001004418.1		309025	52486827	NM_001004418.1	Tacc2	NP_001004418.1	ILMN_1376798	6860253	A	3821	TCGTAGCAAGTTGACCTCGGAGTTCCTGTACCAGGAGGATCATCAGACTC	1	+	190085536-190085585	1q37	"Rattus norvegicus transforming, acidic coiled-coil containing protein 2 (Tacc2), transcript variant 2, mRNA."		"A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon [goid 21987] [evidence ISS]; Generation of cells within the nervous system [goid 22008] [evidence ISS]; The movement of the nucleus of the ventricular zone cell between the apical and the basal zone surfaces. Mitosis occurs when the nucleus is near the apical surface, that is, the lumen of the ventricle [goid 22027] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of astral microtubules, any of the spindle microtubules that radiate in all directions from the spindle poles [goid 30953] [evidence ISS]; Any process that modulates the frequency, rate or extent of any cellular process that depends upon or alters the microtubule cytoskeleton [goid 32886] [evidence ISS]"	"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with a nuclear hormone receptor, a ligand-dependent receptor found in the nucleus of the cell [goid 35257] [evidence ISS]"
Miscellaneous function -> Other miscellaneous function protein	Oncogenesis	Rattus norvegicus	RefSeq	GI_52486827	ILMN_295349	TACC2	NM_001004418.1	NM_001004418.1		309025	52486827	NM_001004418.1	Tacc2	NP_001004418.1	ILMN_1650063	2640541	S	3745	TAAGGTTGGTTTGACCGTATGCAGTGCCGAGACCTACCAGGACTCCTTGC	1	+	190085460-190085509	1q37	"Rattus norvegicus transforming, acidic coiled-coil containing protein 2 (Tacc2), transcript variant 2, mRNA."		"A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins [goid 226] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon [goid 21987] [evidence ISS]; Generation of cells within the nervous system [goid 22008] [evidence ISS]; The movement of the nucleus of the ventricular zone cell between the apical and the basal zone surfaces. Mitosis occurs when the nucleus is near the apical surface, that is, the lumen of the ventricle [goid 22027] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of astral microtubules, any of the spindle microtubules that radiate in all directions from the spindle poles [goid 30953] [evidence ISS]; Any process that modulates the frequency, rate or extent of any cellular process that depends upon or alters the microtubule cytoskeleton [goid 32886] [evidence ISS]"	"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with a nuclear hormone receptor, a ligand-dependent receptor found in the nucleus of the cell [goid 35257] [evidence ISS]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62653574-S	ILMN_291717	RGD1559807_PREDICTED	XM_001066511.1	XM_001066511.1		500986	109484592	XM_001066511.1	RGD1559807_predicted	XP_001066511.1	ILMN_1374346	4560184	S	1323	GGAGGTGAACGGATGTCCTGTGGGTGGAGACAGTGACCTGGATACGCTTC				8q22	"PREDICTED: Rattus norvegicus similar to PDZ domain containing 2 (predicted) (RGD1559807_predicted), mRNA."
Signaling molecule -> Cytokine	Signal transduction -> Intracellular signaling cascade -> JAK-STAT cascade;Cell proliferation and differentiation	Rattus norvegicus	RefSeq	GI_62639820-S	ILMN_284706	RGD1565164_PREDICTED	XM_001053795.1	XM_001053795.1		361582	109462027	XM_001053795.1	RGD1565164_predicted	XP_001053795.1	ILMN_1372956	5890300	S	323	GGAGGAGTTTTTTCATCCAAGAAGAACTGGGCCTCCTTACATTCGGGTGG				1q22	"PREDICTED: Rattus norvegicus similar to associated molecule with the SH3 domain of STAM (predicted) (RGD1565164_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62643985-S	ILMN_52780	LOC502551	XM_578037.1	XM_578037.1		502551	62643985	XM_578037.1	LOC502551	XP_578037.1	ILMN_1351726	2850138	S	242	GGGGGAGCAATCATGCAAGGAGCCCAGGTGTCTATCATTTACTGCTGCAC				2q34	"PREDICTED: Rattus norvegicus similar to TDPOZ4 (LOC502551), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_57164084-S	ILMN_289013	LOC494224	NM_001009505.1	NM_001009505.1		494224	57164084	NM_001009505.1	LOC494224	NP_001009505.1	ILMN_1368437	5130053	S	139	GCCAGTGATGAGTTACCTGAACGGATTTCTTTTCCCCCATTCGGGCCTCC	14	-	21690614-21690663	14p21	"Rattus norvegicus follicular dendritic cell secreted (LOC494224), mRNA."
		Rattus norvegicus	RefSeq	GI_62664633-S	ILMN_51859	LOC498884	XM_574172.1	XM_574172.1		498884	62664633	XM_574172.1	LOC498884	XP_574172.1	ILMN_1356017	460292	S	1347	ATTAAAGCCAAGGGTGGAGGGCAGCTCAGCGATGGCGTCTGTAGGTGGTG					"PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC498884), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576800-S	ILMN_276692	OLR193	NM_001000186.1	NM_001000186.1		293336	47576800	NM_001000186.1	Olr193	NP_001000186.1	ILMN_1374379	940471	S	891	GAGAACCAGGGAGATTAAGCAGGGAATTCAGAACTTGCTGAGGAGGTGGT	1	-	162895760-162895809	1q33	"Rattus norvegicus olfactory receptor 193 (Olr193), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr193	Olr193
		Rattus norvegicus	RefSeq	GI_62647509-S	ILMN_70024	LOC502790	XM_578289.1	XM_578289.1		502790	62647509	XM_578289.1	LOC502790	XP_578289.1	ILMN_1353332	2320164	S	376	GTCCCGGAGTCCCTTCCCGGTTCTCCAGCAGTGGCTATGGCACAGATTTT					"PREDICTED: Rattus norvegicus similar to Ig kappa chain V region EV15 precursor (LOC502790), mRNA."
Select regulatory molecule -> G-protein -> Small GTPase	Intracellular protein traffic -> General vesicle transport	Rattus norvegicus	RefSeq	GI_47059168-S	ILMN_286444	ARL9	NM_212459.1	NM_212459.1		289565	47059168	NM_212459.1	Arl9	NP_997624.1	ILMN_1360934	2970332	S	386	ATATCCACGATGCTTTGGCTCTGTCTGACGTGGGGAACGACAGGAAGCTC	14	-	33452482-33452531	14p11	"Rattus norvegicus ADP-ribosylation factor-like 9 (Arl9), mRNA."		Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]"
Miscellaneous function -> Transmembrane receptor regulatory/adaptor protein	Signal transduction	Rattus norvegicus	RefSeq	GI_62655133-S	ILMN_67863	RAPH1_PREDICTED	XM_343579.2	XM_343579.2		363239	62655133	XM_343579.2	Raph1_predicted	XP_343580.2	ILMN_1350185	6660050	S	2631	TTCTCGGAAGCCTGGAAGCGAGGCACTCAGTTGGAAGAGTCCAGCAAGTA				9q31	"PREDICTED: Rattus norvegicus Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 (predicted) (Raph1_predicted), mRNA."
Transcription factor -> Homeobox transcription factor;Nucleic acid binding -> Other DNA-binding protein	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_62666176-S	ILMN_61829	LOC502438	XM_577919.1	XM_577919.1		502438	62666176	XM_577919.1	LOC502438	XP_577919.1	ILMN_1363548	380008	S	276	ACCGATGGCTGCTGCAGGAGAAATTCTGGTAGCAAGGAGTACGAGGGTGT				20q11	"PREDICTED: Rattus norvegicus similar to hypothetical protein MGC67567 (LOC502438), mRNA."
		Rattus norvegicus	RefSeq	GI_34861037-S	ILMN_66013	LOC360318	XM_346568.1	XM_346568.1		360318	34861037	XM_346568.1	LOC360318	XP_346569.1	ILMN_1366494	1850139	S	559	CTCCTACCTTCGTGTTCTCCTACATGGAGAGCTGGAGCAAGCTGGAAGCC					"PREDICTED: Rattus norvegicus hypothetical LOC360318 (LOC360318), mRNA."
Receptor;Transporter	Carbohydrate metabolism -> Carbohydrate transport;Transport -> Carbohydrate transport	Rattus norvegicus	RefSeq	GI_62647462-S	ILMN_67936	LOC362384	XM_342708.2	XM_342708.2		362384	62647462	XM_342708.2	LOC362384	XP_342709.2	ILMN_1364068	5910541	S	1378	CATGGCTGTGTGGTTGGTAGGGCAGAGCTGAGGCAGGAGTGCAGTGTTTC				4q33	"PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ13110 (predicted) (LOC362384), mRNA."
Nucleic acid binding -> Helicase -> DNA helicase	Nucleoside, nucleotide and nucleic acid metabolism -> DNA metabolism -> DNA repair	Rattus norvegicus	RefSeq	GI_62652671-S	ILMN_58222	RECQL4_PREDICTED	XM_216973.4	XM_216973.4		300057	109480938	XM_216973.4	Recql4_predicted	XP_216973.4	ILMN_1358040	4230397	S	3700	ATGACCACCAAACATGGGAGGGGCTACATGAGGGGGCATGGGGCAAGCCA	7	-	114752991-114753037:114753038-114753040	7q34	"PREDICTED: Rattus norvegicus RecQ protein-like 4 (predicted) (Recql4_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_31341320-S	ILMN_48234	NCSTN	NM_174864.3	NM_174864.3		289231	77404340	NM_174864.3	Ncstn	NP_777353.1	ILMN_1361918	6450520	S	2009	GAGCTCCACAGAATACTCTACGTGGGCCGAGAGCCGCTGGAAAGATATCC	13	-	88061881-88061930	13q24	"Rattus norvegicus nicastrin (Ncstn), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm [goid 5765] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]"	"The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence ISS]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence IEP]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence ISS]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence ISS]; The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain) [goid 6509] [evidence ISS]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IEA]; The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations [goid 16485] [evidence ISS]; Any process that activates or increases the activity of an enzyme [goid 43085] [evidence ISS]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]
Transfer/carrier protein;Protease -> Serine protease;Miscellaneous function	Transport;Miscellaneous	Rattus norvegicus	RefSeq	GI_61556985-A	ILMN_271853	TF	NM_001013110.1	NM_001013110.1		24825	61556985	NM_001013110.1	Tf	NP_001013128.1	ILMN_1376249	3190022	S	2203	CCTGAGCGGCTGGGGCTAACTGTGTCCGTCTTCACTGCTGTGTGTTACCA	8	-	108217813-108217862	8q32	"Rattus norvegicus transferrin (Tf), mRNA."	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence IEA]; A membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance [goid 30139] [evidence IEA]	"The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence IEA]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence IEA]"	"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with ferric iron, Fe(III) [goid 8199] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]"	Tfn; Trf; MGC93500	Tfn; Trf; MGC93500
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Signal transduction -> Intracellular signaling cascade -> MAPKKK cascade	Rattus norvegicus	RefSeq	GI_62662227-S	ILMN_56976	MAPK8	XM_341399.2	XM_341399.2		116554	62662227	XM_341399.2	Mapk8	XP_341400.2	ILMN_1365337	520520	S	1031	GGTGTCTATGGTGGATTGTACCTCAGTTGTGCTGATGGTGTCTGTGGTGG				16p16	"PREDICTED: Rattus norvegicus mitogen-activated protein kinase 8 (Mapk8), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any small, fluid-filled, spherical organelle enclosed by membrane or protein [goid 31982] [evidence IDA]; All of the contents of a dendrite, excluding the surrounding plasma membrane [goid 32839] [evidence IDA]; A cell projection part that is part of an axon [goid 33267] [evidence IDA]; The portion of the cell soma (cell body) that excludes the nucleus [goid 43204] [evidence IDA]"	"The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IDA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell [goid 6970] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence ISS]; The process of introducing a phosphate group into a JUN protein [goid 7258] [evidence ISS]; The process of introducing a phosphate group into a JUN protein [goid 7258] [evidence ISS]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism [goid 9408] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers [goid 9411] [evidence ISS]; The posttranslational phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine [goid 18107] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of microtubule polymerization [goid 31116] [evidence IMP]; The process whose specific outcome is the progression of the neurite over time, from its formation to the mature structure. The neurite is any process extending from a neural cell, such as axons or dendrites [goid 31175] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus [goid 42542] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA replication [goid 45740] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IEP]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence ISS]; Catalysis of the phosphorylation and activation of members of the JUN family, a gene family that encodes nuclear transcription factors [goid 4705] [evidence IDA]; Catalysis of the phosphorylation and activation of members of the JUN family, a gene family that encodes nuclear transcription factors [goid 4705] [evidence IDA]; Catalysis of the phosphorylation and activation of members of the JUN family, a gene family that encodes nuclear transcription factors [goid 4705] [evidence TAS]; Catalysis of the phosphorylation and activation of members of the JUN family, a gene family that encodes nuclear transcription factors [goid 4705] [evidence ISS]; Catalysis of the phosphorylation and activation of members of the JUN family, a gene family that encodes nuclear transcription factors [goid 4705] [evidence ISS]; Catalysis of the phosphorylation and activation of members of the JUN family, a gene family that encodes nuclear transcription factors [goid 4705] [evidence ISS]; Catalysis of the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli [goid 4707] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence ISS]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]"
		Rattus norvegicus	RefSeq	GI_62661978-S	ILMN_49140	LOC290362	XM_224348.3	XM_224348.3		290362	62661978	XM_224348.3	LOC290362	XP_224348.3	ILMN_1365169	6520609	S	6692	CACAGAGGCACTGATGCTGGAAGTCCAAAGGATCCACCTGGCTCAGAGGA					"PREDICTED: Rattus norvegicus similar to Neurogenic locus notch homolog protein 4 precursor (Notch 4) (hNotch4) (LOC290362), mRNA."
Molecular function unclassified	Developmental processes	Rattus norvegicus	RefSeq	GI_62078900-S	ILMN_293883	RGD1359449	NM_001014084.1	NM_001014084.1		314959	62078900	NM_001014084.1	RGD1359449	NP_001014106.1	ILMN_1367654	3850494	S	1426	GCTTACAAGAGTGCTGTTATTGTATGGTGGCAAGGTGAGACCACAGGGAG	7	+	101145075-101145124	7q33	"Rattus norvegicus gasdermin domain containing protein RGD1359449 (RGD1359449), mRNA."
		Rattus norvegicus	Unigene	Rn.27177	ILMN_161361	RN.27177	Rn.27177		Rn.27177		20427894	BQ211429			ILMN_1530195	780091	S	239	TTTTGACTGACCACTTATTTTAGCCTCTTTCTTCCTATTGCTTACTACAG					"UI-R-DY1-cok-d-24-0-UI.s1 UI-R-DY1 Rattus norvegicus cDNA clone UI-R-DY1-cok-d-24-0-UI 3', mRNA"
Transcription factor -> Basic helix-loop-helix transcription factor;Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_62638382-S	ILMN_276660	TCF21	NM_001032397.1	NM_001032397.1		252856	74048315	NM_001032397.1	Tcf21	NP_001027569.1	ILMN_1352700	2060372	S	974	CTTGATTAACTTCTGCCCTGAATGACTGTGAGCCTGGCTGGTCCAAGTGC	1	+	23213655-23213704	1p12	"Rattus norvegicus transcription factor 21 (Tcf21), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"Branching of the ureteric bud [goid 1658] [evidence IEA]; Branching of the ureteric bud [goid 1658] [evidence ISS]; The establishment of the sex of an organism by physical differentiation [goid 7548] [evidence IEA]; The establishment of the sex of an organism by physical differentiation [goid 7548] [evidence ISS]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; The process by which the anatomical structures of the digestive tract are generated and organized during embryonic development. The digestive tract is the tube extending from the mouth to the anus, including the pharynx, esophagus, stomach, and intestines [goid 48557] [evidence IMP]; The process whose specific outcome is the progression of a gland over time, from its formation to the mature structure. A gland is an organ specialised for secretion [goid 48732] [evidence IMP]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]	MGC112908; Pod1; Msf-1; Capsulin	MGC112908; Pod1; Msf-1; Capsulin
Oxidoreductase -> Reductase	Other metabolism	Rattus norvegicus	RefSeq	GI_40254756-S	ILMN_274436	AKR1A1	NM_031000.2	NM_031000.2		78959	40254756	NM_031000.2	Akr1a1	NP_112262.1	ILMN_1373732	5890270	S	1232	GCCCATGATTACGGTGGATGGGAAGAGAGTCCCCAGAGATGCTGGACACC	5	-	136920678-136920719:136921978-136921985	5q36	"Rattus norvegicus aldo-keto reductase family 1, member A1 (Akr1a1), mRNA."	"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence ISS]; The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence IEA]"	"Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways resulting in the formation of L-ascorbic acid; L-ascorbic acid ionizes to give L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, which is required as a cofactor in the oxidation of prolyl residues to hydroxyprolyl, and other reactions [goid 19853] [evidence ISS]; The chemical reactions and pathways resulting in the formation of L-ascorbic acid; L-ascorbic acid ionizes to give L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, which is required as a cofactor in the oxidation of prolyl residues to hydroxyprolyl, and other reactions [goid 19853] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of D-glucuronate, the dextrorotatory isomer of glucuronate [goid 42840] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of D-glucuronate, the dextrorotatory isomer of glucuronate [goid 42840] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of aldehydes, any organic compound with the formula R-CH=O [goid 46185] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of aldehydes, any organic compound with the formula R-CH=O [goid 46185] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]"	"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: an alditol + NADP+ = an aldose + NADPH + H+ [goid 4032] [evidence ISS]; Catalysis of the reaction: an alditol + NADP+ = an aldose + NADPH + H+ [goid 4032] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: an alcohol + NADP+ = an aldehyde + NADPH + H+ [goid 8106] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: L-gulonate + NADP+ = D-glucuronate + NADPH [goid 47939] [evidence ISS]; Catalysis of the reaction: L-gulonate + NADP+ = D-glucuronate + NADPH [goid 47939] [evidence IEA]"	Akr1a4	Akr1a4
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62079024-S	ILMN_279895	RELL2	NM_001014149.1	NM_001014149.1		361313	62079024	NM_001014149.1	Rell2	NP_001014171.1	ILMN_1353611	3190348	S	1109	GGAAGACTCAAGGATGCCAGCCTAGTCCCTTGTACACTTGAGGGGACCCC	18	+	30879246-30879295	18p11	"Rattus norvegicus RELT-like 2 (Rell2), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"			MGC109265	MGC109265
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_56090340-S	ILMN_302596	RGD1359334	NM_001007638.1	NM_001007638.1		295265	56090340	NM_001007638.1	RGD1359334	NP_001007639.1	ILMN_1372613	6020253	S	1017	GCCCAGCTCTTGCCTTTTGGAAACGTGTCAGGATTGGCCTGGAGGATATC	2	-	190150635-190150684	2q34	"Rattus norvegicus similar to hypothetical protein FLJ20519 (RGD1359334), mRNA."	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]			MGC94920	MGC94920
Select calcium binding protein -> Other select calcium binding proteins	Signal transduction -> Intracellular signaling cascade -> Calcium mediated signaling	Rattus norvegicus	RefSeq	GI_14269575-S	ILMN_280819	KCNIP3	NM_032462.1	NM_032462.1		65199	14269575	NM_032462.1	Kcnip3	NP_115851.1	ILMN_1370370	5550181	S	460	TCCACTTTGAGGACTTTGTGGTTGGGCTCTCCATCCTGCTTCGAGGGACC	3	-	114963087-114963128:114967715-114967722	3q36	"Rattus norvegicus Kv channel interacting protein 3, calsenilin (Kcnip3), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]"	"Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IMP]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7610] [evidence ISS]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis in neurons [goid 43523] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli [goid 48265] [evidence ISS]"	"Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS];  [goid 15459] [evidence IDA]; Any activity that stops or downregulates transcription of specific genes or sets of genes [goid 16566] [evidence ISS]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium [goid 48306] [evidence ISS]"	Dream; rKChIP3	Dream; rKChIP3
Membrane traffic protein -> Other membrane traffic protein	Signal transduction -> Intracellular signaling cascade	Rattus norvegicus	RefSeq	GI_50300478-S	ILMN_280168	ENTH	NM_001002022.1	NM_001002022.1		360515	50300478	NM_001002022.1	Enth	NP_001002022.1	ILMN_1354245	1230059	S	1539	AATGTAAGACAGCAAGAACCCCACTTCCACCGCCATAGTCCAGCGTGGGC	10	+	31046897-31046946	10q21	"Rattus norvegicus enthoprotin (Enth), mRNA."	A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes [goid 30136] [evidence IDA]	"The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles [goid 48193] [evidence IPI]; The process by which clathrin triskelia are assembled into the ordered structure known as a clathrin cage [goid 48268] [evidence IMP]"	"Interacting selectively with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles [goid 30276] [evidence IDA]"	Epn4; Clint	Epn4; Clint
		Rattus norvegicus	RefSeq	GI_62659361	ILMN_276240	TMEM58_PREDICTED	XM_001062943.1	XM_001062943.1		360848	109498673	XM_001062943.1	Tmem58_predicted	XP_001062943.1	ILMN_1649766	6020142	S	1070	AGGCCGTGGATGAGGGGTGGGTAGGGAGGGCTTGGGATTCATGAGCTATT				13q13	"PREDICTED: Rattus norvegicus transmembrane protein 58 (predicted) (Tmem58_predicted), mRNA."
Transcription factor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription	Rattus norvegicus	RefSeq	GI_62648333-S	ILMN_285535	SURB7_PREDICTED	XM_001074060.1	XM_001074060.1		312849	109474462	XM_001074060.1	Surb7_predicted	XP_001074060.1	ILMN_1361287	6350601	S	409	GCACAGTCACAGCTGAAGACCAGAAGTGTTACCCATAGTCAGTCTCTCCC				4q44	"PREDICTED: Rattus norvegicus SRB7 (suppressor of RNA polymerase B) homolog (S. cerevisiae) (predicted) (Surb7_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Neuronal activities	Rattus norvegicus	RefSeq	GI_62638265-S	ILMN_63619	LOC502211	XM_577673.1	XM_577673.1		502211	62638265	XM_577673.1	LOC502211	XP_577673.1	ILMN_1350465	2900020	S	2920	AGATGGGTCTTCAAACCACGTTTGCAGGAAATAAGATGTGTGGTCTCTGC				1p13	"PREDICTED: Rattus norvegicus similar to putative pheromone receptor (LOC502211), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576844-S	ILMN_277010	OLR208	NM_001000194.1	NM_001000194.1		293355	47576844	NM_001000194.1	Olr208	NP_001000194.1	ILMN_1367117	520280	S	417	GATCTGCTGGCTTGGGGTGTTCATATCATGGGCCTTGGCATCTCTGAGTG	1	-	163928662-163928711	1q33	"Rattus norvegicus olfactory receptor 208 (Olr208), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr208	Olr208
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62664027-S	ILMN_52234	RGD1562371_PREDICTED	XM_574101.2	XM_574101.2		498819	109506293	XM_574101.2	RGD1562371_predicted	XP_574101.2	ILMN_1349006	3170088	S	653	ACCTAGTCAGAACCTCCCAGGGCGTGCTATCAAAGGGACCTCTCATCTGC	18	+	1810909-1810958	18p13	"PREDICTED: Rattus norvegicus similar to GREB1 protein isoform a (predicted) (RGD1562371_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62664029-S	ILMN_52234	RGD1562371_PREDICTED	XM_574101.2	XM_574101.2		498819	109506293	XM_574101.2	RGD1562371_predicted	XP_574101.2	ILMN_1363691	630112	S	3754	GGACCTGAGACTACTGAGAACCCCAATGAGCCTGTGTTCCTGCGAGTGTT	18	+	1931071-1931120	18p13	"PREDICTED: Rattus norvegicus similar to GREB1 protein isoform a (predicted) (RGD1562371_predicted), mRNA."
Nucleic acid binding	Developmental processes -> Gametogenesis -> Spermatogenesis and motility	Rattus norvegicus	RefSeq	GI_62658840	ILMN_50918	RGD1307973_PREDICTED	XM_222150.4	XM_222150.4		304469	109495862	XM_222150.4	RGD1307973_predicted	XP_222150.3	ILMN_1650442	3830541	S	2078	TCGGACAGGTGGAGCCTCTAATCATAGGACGGGCTACCCAGTTTGGCTGG	12	+	33221914-33221963	12q15	"PREDICTED: Rattus norvegicus similar to 2900002H16Rik protein (predicted) (RGD1307973_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62665064-S	ILMN_52491	LOC502193	XM_577654.1	XM_577654.1		502193	62665064	XM_577654.1	LOC502193	XP_577654.1	ILMN_1372550	6980746	S	1477	TGTGGCAGTCCTGGAACAGGGCCGAGGTCGCCCAGGGATTTGAATATGTC					"PREDICTED: Rattus norvegicus similar to Ubiquitin-conjugating enzyme E2 I (Ubiquitin-protein ligase I) (Ubiquitin carrier protein I) (SUMO-1-protein ligase) (SUMO-1 conjugating enzyme) (Ubiquitin-conjugating enzyme UbcE2A) (LOC502193), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_56605731-S	ILMN_294027	FAM96A	NM_001008327.1	NM_001008327.1		300797	56605731	NM_001008327.1	Fam96a	NP_001008328.1	ILMN_1360423	4670021	S	845	GAAAGCTGGGATTAAAGGTGTGAGCCACCACTGGCCAGCCTTCAGAGTGT	8	+	70422405-70422454	8q24	"Rattus norvegicus family with sequence similarity 96, member A (Fam96a), mRNA."	"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]"	"Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]"	"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]"	Fam96a; MGC105538	Fam96a; MGC105538
Cytoskeletal protein -> Other cytoskeletal proteins	Protein targeting and localization;Miscellaneous	Rattus norvegicus	RefSeq	GI_62078626-S	ILMN_296577	RIBC2	NM_001013949.1	NM_001013949.1		300122	62078626	NM_001013949.1	Ribc2	NP_001013971.1	ILMN_1374218	4120278	S	1059	TGAGGCTTCAGGAGGAAGAGCGCCAGCACAACATGGACTGGGACCTGCGC	7	+	123150818-123150819:123153919-123153966	7q34	"Rattus norvegicus RIB43A domain with coiled-coils 2 (Ribc2), mRNA."				RGD1309033	RGD1309033
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling	Rattus norvegicus	RefSeq	GI_62639099-S	ILMN_264248	GPR4	NM_001025680.1	NM_001025680.1		308408	71043601	NM_001025680.1	Gpr4	NP_001020851.1	ILMN_1351646	2900373	S	1261	TCACCCTGGAGACACCATTGACCTCCAAGAGGAGCACCACCGGCAAAACG	1	+	78587801-78587850	1q21	"Rattus norvegicus G protein-coupled receptor 4 (Gpr4), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	MGC116369	MGC116369
Transferase -> Glycosyltransferase	Carbohydrate metabolism -> Other polysaccharide metabolism;Protein metabolism and modification -> Protein modification -> Protein glycosylation	Rattus norvegicus	RefSeq	GI_40786466-S	ILMN_298612	DPAGT1	NM_199388.1	NM_199388.1		300668	40786466	NM_199388.1	Dpagt1	NP_955420.1	ILMN_1357055	2940253	S	1642	AGGAATCCCCTGGGCCTTGAGAGAGAACCTGGGCTAGGGCTAGAGTTAGG	8	+	47311325-47311374	8q22	"Rattus norvegicus dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) (Dpagt1), mRNA."	"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The chemical reactions and pathways involving UDP-N-acetylglucosamine, a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate [goid 6047] [evidence IDA]; The chemical reactions and pathways resulting in the formation of dolichol-linked oligosaccharide, usually by a stepwise addition of glycosyl chains to endoplasmic reticulum membrane-bound dolichol-P [goid 6488] [evidence IDA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways involving dolichols, any 2,3-dihydropolyprenol derived from four or more linked isoprene units [goid 19348] [evidence IDA]; The chemical reactions and pathways resulting in the formation of dolichols, any 2,3-dihydropolyprenol derived from four or more linked isoprene units [goid 19408] [evidence ISS]"	"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + dolichyl phosphate = UMP + N-acetyl-D-glucosaminyl-diphosphodolichol [goid 3975] [evidence IEA]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + dolichyl phosphate = UMP + N-acetyl-D-glucosaminyl-diphosphodolichol [goid 3975] [evidence ISS]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + dolichyl phosphate = UMP + N-acetyl-D-glucosaminyl-diphosphodolichol [goid 3975] [evidence NAS]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + dolichyl phosphate = UMP + N-acetyl-D-glucosaminyl-diphosphodolichol [goid 3975] [evidence IDA]; Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + dolichyl phosphate = UMP + N-acetyl-D-glucosaminyl-diphosphodolichol [goid 3975] [evidence ISS]; Catalysis of the reaction: UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine + undecaprenyl phosphate = UMP + N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine-diphosphoundecaprenol [goid 8963] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]"	Dpagt1	Dpagt1
		Rattus norvegicus	RefSeq	GI_62658056	ILMN_68737	LOC288010	XM_221337.3	XM_221337.3		288010	62658056	XM_221337.3	LOC288010	XP_221337.3	ILMN_1650820	3060438	S	1459	GCTCTGGACCGTGATTTCCATGTGCACTGCTACCGCTGTGAGTGTGCTGT				11q23	"PREDICTED: Rattus norvegicus similar to LIM domain containing preferred translocation partner in lipoma; LIM domain-containing preferred translocation partner in lipoma; Lipoma-preferred-partner gene (LOC288010), mRNA."
Oxidoreductase -> Oxygenase;Oxidoreductase -> Oxidase	Amino acid metabolism -> Other amino acid metabolism;Sensory perception -> Vision;Developmental processes	Rattus norvegicus	RefSeq	GI_62640875-S	ILMN_276298	TYR_MAPPED	XM_001060770.1	XM_001060770.1		308800	109462395	XM_001060770.1	Tyr_mapped	XP_001060770.1	ILMN_1361218	5670332	S	1656	GGCTATGCCATCAGAAGAAAAAGCAACCCCAGGAGGAAAGGCAGCCCCTC				1q32	"PREDICTED: Rattus norvegicus tyrosinase (albino coat color) (mapped) (Tyr_mapped), mRNA."
	Intracellular protein traffic -> Endocytosis -> Phagocytosis;Muscle contraction;Developmental processes -> Mesoderm development -> Muscle development;Cell structure and motility -> Cell structure;Cell structure and motility -> Cell motility	Rattus norvegicus	RefSeq	GI_62662967-S	ILMN_60020	MYOM2	XM_240481.4	XM_240481.4		306616	109503557	XM_240481.4	Myom2	XP_240481.4	ILMN_1349664	670603	S	4438	GGAGAAGATCCCCGACATCTCAGCTCCCCAGCAGGCCAAACCCAAGCTTA	16	-	79330420-79330469	16q12.5	"PREDICTED: Rattus norvegicus myomesin 2 (Myom2), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]"	"A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence ISS]"	The action of a molecule that contributes to the structural integrity of a muscle fiber [goid 8307] [evidence TAS]
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation	Rattus norvegicus	RefSeq	GI_34854075-S	ILMN_298866	LOC686082	XM_001066470.1	XM_001066470.1		686082	109457837	XM_001066470.1	LOC686082	XP_001066470.1	ILMN_1361381	2350056	S	263	GTCCAACAGCAAGAAAGGCGATGAAACTCCCTTGGTTCAAAGAACACTGG	1	+	50619222-50619271	1q12	"PREDICTED: Rattus norvegicus similar to serine/threonine kinase (LOC686082), mRNA."		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	"Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP [goid 4672] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]"
Ion channel -> Other ion channel	Transport -> Ion transport -> Cation transport;Sensory perception -> Pain sensation;Sensory perception -> Other sensory perception	Rattus norvegicus	RefSeq	GI_11560019-S	ILMN_291494	ACCN5	NM_022227.1	NM_022227.1		63866	11560019	NM_022227.1	Accn5	NP_071563.1	ILMN_1359453	4730670	S	1389	GCAGTGAGTGTGCCCGAGTTACTTGCAGATGTTGGAGGTCAGCTGGGACT	2	+	173660684-173660707:173661773-173661798	2q33	"Rattus norvegicus amiloride-sensitive cation channel 5, intestinal (Accn5), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]"	Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of facilitated diffusion of a sodium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5272] [evidence IEA];  [goid 15280] [evidence IDA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Inac; Blinac	Inac; Blinac
		Rattus norvegicus	RefSeq	GI_62646692-S	ILMN_53997	LOC499981	XM_575335.1	XM_575335.1		499981	62646692	XM_575335.1	LOC499981	XP_575335.1	ILMN_1357001	610204	S	914	AGCAGGAAGCCGCCATTTGAGTGAATTGATCTGCAGGAGGCACAGACACC					"PREDICTED: Rattus norvegicus similar to lamin B3 (LOC499981), mRNA."
Transcription factor -> Zinc finger transcription factor -> KRAB box transcription factor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Developmental processes;Other metabolism	Rattus norvegicus	RefSeq	GI_62653289-S	ILMN_269903	ZFP426	XM_001076925.1	XM_001076925.1		367034	109484340	XM_001076925.1	Zfp426	XP_001076925.1	ILMN_1367280	610577	S	1958	GTGTCAGCAGTGTGGAAAAGCCTACAGTCACCCTCGTTCACTTCGCAGAC				8q13	"PREDICTED: Rattus norvegicus zinc finger protein 426 (Zfp426), mRNA."
Miscellaneous function	Protein metabolism and modification -> Translational regulation	Rattus norvegicus	RefSeq	GI_62642638	ILMN_290267	RGD1563903_PREDICTED	XM_001061405.1	XM_001061405.1		365613	109496274	XM_001061405.1	RGD1563903_predicted	XP_001061405.1	ILMN_1650062	5340301	S	386	GGTGAACAAGGCTCCTACGATGCGCAGACGAACCTACAGAGCTCACGGCT				2q11	"PREDICTED: Rattus norvegicus hypothetical gene supported by X60212 (predicted) (RGD1563903_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62651749-S	ILMN_57677	DAZAP1_PREDICTED	XM_343164.2	XM_343164.2		362836	62651749	XM_343164.2	Dazap1_predicted	XP_343165.2	ILMN_1354101	2850193	S	1747	CGGGCTGGGGTGCGGGCAGAGACTACTGCGTGCGTTTGGTTTTTTGTTCA				7q11	"PREDICTED: Rattus norvegicus DAZ associated protein 1 (predicted) (Dazap1_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47577800-S	ILMN_287802	OLR1231	NM_001000813.1	NM_001000813.1		405099	47577800	NM_001000813.1	Olr1231	NP_001000813.1	ILMN_1374257	60452	S	126	GGTGGGAAACATTGGCTTGATCACCTTGATTAGCCTCAATCCTCACCTGC	8	+	40507428-40507477	8q22	"Rattus norvegicus olfactory receptor 1231 (Olr1231), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1231	Olr1231
		Rattus norvegicus	RefSeq	GI_62661858-S	ILMN_65004	LOC501983	XM_577412.1	XM_577412.1		501983	62661858	XM_577412.1	LOC501983	XP_577412.1	ILMN_1359756	5420064	S	50	ACTCAAGGCTTCTAAGCAGCTCTCCCCAGATTCTACCTCTGGCCCCGAAC					"PREDICTED: Rattus norvegicus similar to TRAV13D-1 (LOC501983), mRNA."
Transferase -> Glycosyltransferase	Carbohydrate metabolism -> Other polysaccharide metabolism;Lipid, fatty acid and steroid metabolism -> Lipid metabolism;Protein metabolism and modification -> Protein modification -> Protein glycosylation	Rattus norvegicus	RefSeq	GI_13928967-S	ILMN_282366	ST3GAL2	NM_031695.1	NM_031695.1		64442	13928967	NM_031695.1	St3gal2	NP_113883.1	ILMN_1349516	5080736	S	2443	CCGAGAAGGGCTGTAGCGGAACCTCTCAGGGCTCTAATCATCGTGCAGTC				19q12	"Rattus norvegicus ST3 beta-galactoside alpha-2,3-sialyltransferase 2 (St3gal2), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]"	"The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IDA]; The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]"	Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IDA]; Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IEA]	Siat5; Siat4b	Siat5; Siat4b
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62648986-S	ILMN_281362	RNF20_PREDICTED	XM_001053543.1	XM_001053543.1		313216	109476457	XM_001053543.1	Rnf20_predicted	XP_001053543.1	ILMN_1359730	3440309	S	4090	CCAGAGAGGGTTGGTGAATTATGAATTACTGTCATCATCCTCTCAGAGGG				5q22	"PREDICTED: Rattus norvegicus ring finger protein 20 (predicted), transcript variant 4 (Rnf20_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62661197-S	ILMN_273199	LOC498477	XM_573735.1	XM_573735.1		498477	62661197	XM_573735.1	LOC498477	XP_573735.1	ILMN_1348867	1400039	S	879	TCCACCAGGAGCACTGAGGGTGCAAAGATTGACAACACCTCCCGCATCTC	15	+	20327114-20327163	15p14	"PREDICTED: Rattus norvegicus similar to Spetex-2C protein (LOC498477), mRNA."
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_62660538-S	ILMN_56516	LOC289656	XM_223453.2	XM_223453.2		289656	62660538	XM_223453.2	LOC289656	XP_223453.2	ILMN_1352779	6520048	S	664	TCAACTGACCACTGGCCTTAGCTCTGGGATGCTGGGTGGAAGCTGGGGCT				14q11	"PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L23a (LOC289656), mRNA."
Transfer/carrier protein;Select regulatory molecule -> G-protein modulator	Signal transduction -> Intracellular signaling cascade;Developmental processes -> Embryogenesis;Cell proliferation and differentiation	Rattus norvegicus	RefSeq	GI_62653059-S	ILMN_55005	RACGAP1_PREDICTED	XM_235650.4	XM_235650.4		315298	109481272	XM_235650.4	Racgap1_predicted	XP_235650.3	ILMN_1354270	6420181	S	1701	TGTTCCAGGACATCAAACGCCAGCTCAAGGTGGTGGAGCGCCTGCTCTCT	7	-	138369072-138369093:138369316-138369343	7q36	"PREDICTED: Rattus norvegicus Rac GTPase-activating protein 1 (predicted) (Racgap1_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62666826	ILMN_50942	LOC501556	XM_576960.1	XM_576960.1		501556	62666826	XM_576960.1	LOC501556	XP_576960.1	ILMN_1650354	50113	S	668	CTACCCACCAGTGTATCTGTTCAACTCCCAATTTTGATGCTGGGGCTGGC				Xq21	"PREDICTED: Rattus norvegicus similar to uracil DNA glycosylase (LOC501556), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_56090366-S	ILMN_289179	ASCC1	NM_001007632.1	NM_001007632.1		294512	56090366	NM_001007632.1	Ascc1	NP_001007633.1	ILMN_1349263	2850129	S	1269	AGCACCACAGCAGCAGGCCCTTCCTTCAGGCTCCAGTTGACTGACGAGGA	20	+	27391348-27391397	20q11	"Rattus norvegicus activating signal cointegrator 1 complex subunit 1 (Ascc1), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]"	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]	MGC94577; CGI-18; Asc-1	MGC94577; CGI-18; Asc-1
		Rattus norvegicus	RefSeq	GI_62718407-S	ILMN_58393	LOC501392	XM_576804.1	XM_576804.1		501392	62718407	XM_576804.1	LOC501392	XP_576804.1	ILMN_1374109	2120458	S	440	CAGCCTTAGAAATCTCAGCTTACAGAGAGGGGAAGATGGGAACTTTGTTC					"PREDICTED: Rattus norvegicus similar to Spindlin-like protein 3 (SPIN-3) (Protein DXF34) (LOC501392), mRNA."
		Rattus norvegicus	RefSeq	GI_62718421-S	ILMN_59014	LOC503345	XM_578881.1	XM_578881.1		503345	62718421	XM_578881.1	LOC503345	XP_578881.1	ILMN_1360675	870735	S	361	GAAAACATGGCTCTAAGGTCAACTGGAGGGGGGTGGTCCTAGCCGAGGTG					"PREDICTED: Rattus norvegicus similar to spermiogenesis specific transcript on the Y 2 (LOC503345), mRNA."
		Rattus norvegicus	RefSeq	GI_62658152-S	ILMN_53232	LOC360735	XM_341008.2	XM_341008.2		360735	62658152	XM_341008.2	LOC360735	XP_341009.2	ILMN_1368820	770148	S	1562	ATGAAAGTGTTTGGAGAGGAGGCAGGGGCCAGGCTAGGGGCGCATGTCCT					"PREDICTED: Rattus norvegicus similar to hypothetical protein MGC21688 (predicted) (LOC360735), mRNA."
Select regulatory molecule -> Kinase modulator	Cell cycle -> Cell cycle control	Rattus norvegicus	RefSeq	GI_31542349-S	ILMN_282257	CCNH	NM_052981.2	NM_052981.2		84389	31542349	NM_052981.2	Ccnh	NP_443213.2	ILMN_1373618	5570132	S	1222	ACCCAAACAGGAAGAGGAGGAGTGGACGGACGATGACCTGGTAGATGCTC	2	+	14199657-14199673:14200542-14200574	2q11	"Rattus norvegicus cyclin H (Ccnh), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; A protein complex that phosphorylates cyclin-dependent kinases such as Cdc2 on Thr161 (or an equivalent residue); contains a catalytic subunit and a regulatory subunit, and some examples also include an assembly factor [goid 19907] [evidence ISS]; A protein complex that phosphorylates cyclin-dependent kinases such as Cdc2 on Thr161 (or an equivalent residue); contains a catalytic subunit and a regulatory subunit, and some examples also include an assembly factor [goid 19907] [evidence IEA]"	"The removal of the oligonucleotide that contains the DNA damage. The oligonucleotide is formed by dual incisions that flank the site of DNA damage [goid 718] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence ISS]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]"	"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence ISS]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]"
Lyase -> Dehydratase	Other metabolism -> Other carbon metabolism	Rattus norvegicus	RefSeq	GI_62653846-S	ILMN_274129	CAR12	XM_001075974.1	XM_001075974.1		363085	109484876	XM_001075974.1	Car12	XP_001075974.1	ILMN_1354371	2100047	S	1402	GAACTAGGGGGCAGGAGTTTTGAGTGGACTTCTCCAGCTGTGTGAGACGG				8q24	"PREDICTED: Rattus norvegicus carbonic anyhydrase 12, transcript variant 1 (Car12), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]"	The chemical reactions and pathways involving compounds containing a single carbon atom [goid 6730] [evidence IEA]	Catalysis of the reaction: H2CO3 = CO2 + H2O [goid 4089] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_34866983-S	ILMN_62686	RGD1564268_PREDICTED	XM_235399.3	XM_235399.3		300001	109480870	XM_235399.3	RGD1564268_predicted	XP_235399.2	ILMN_1354466	2370131	S	63	CAAGGTGATGAAAAACTTCAGCAAGCGGGGACACAGCCGGTGCCGCGATC	7	-	111183193-111183242	7q34	"PREDICTED: Rattus norvegicus similar to ribosomal protein L36 (predicted) (RGD1564268_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62718451-S	ILMN_60799	LOC364164	XM_344247.2	XM_344247.2		364164	62718451	XM_344247.2	LOC364164	XP_344248.2	ILMN_1369877	450438	S	331	TATATCTATGATGAGTGGGACCACAGGAAGGAGGACATCGTGCAGGCAGA					"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610042L04 (LOC364164), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47606360-S	ILMN_294235	OLR72	NM_001001284.1	NM_001001284.1		405015	47606360	NM_001001284.1	Olr72	NP_001001284.1	ILMN_1373418	4560195	S	941	GGTGGGAAACTTCAGCTTCCATGAAAGTGTGGGTTACATCACTATATCTG	1	-	160804962-160805011	1q32	"Rattus norvegicus olfactory receptor 72 (Olr72), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr72	Olr72
Transcription factor -> Zinc finger transcription factor -> Other zinc finger transcription factor;Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription initiation;Oncogenesis	Rattus norvegicus	RefSeq	GI_62656050-S	ILMN_68733	PHF15_PREDICTED	XM_220398.3	XM_220398.3		303113	62656050	XM_220398.3	Phf15_predicted	XP_220398.3	ILMN_1364213	110487	S	2814	CCATGCAACATCGCCGGGCTTCTGGCTTGATGTAGACGAGGTGAGGGAGA				10q22	"PREDICTED: Rattus norvegicus PHD finger protein 15 (predicted) (Phf15_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62718014-S	ILMN_61070	LOC501279	XM_576694.1	XM_576694.1		501279	62718014	XM_576694.1	LOC501279	XP_576694.1	ILMN_1351214	6550048	S	104	CGTGTCGTTCTTACTGGCGAGACATTGGGTGAGCGATATGTGGTGCCGAA					"PREDICTED: Rattus norvegicus similar to Ac1576 (LOC501279), mRNA."
Molecular function unclassified	Oncogenesis -> Tumor suppressor	Rattus norvegicus	RefSeq	GI_62667244-S	ILMN_297730	ARMCX1	NM_001024367.1	NM_001024367.1		501619	66730534	NM_001024367.1	Armcx1	NP_001019538.1	ILMN_1362651	1660044	S	1889	CAATAGCCATCGATGCTGGCTTTAGACTGAGCCACTCTCAGTATGCCAAA	X	+	122180248-122180297	Xq34	"Rattus norvegicus armadillo repeat containing, X-linked 1 (Armcx1), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"		"The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]"
		Rattus norvegicus	Unigene	Rn.19435	ILMN_161080	RN.19435	Rn.19435		Rn.19435		8505489	BE113384			ILMN_1530558	2060333	S	565	TTAAAATAAGCTCTTCCAATGTCCTTAAACACTGCCCTTATTCTTCACAA					"UI-R-BJ1-awe-g-03-0-UI.s1 UI-R-BJ1 Rattus norvegicus cDNA clone UI-R-BJ1-awe-g-03-0-UI 3', mRNA"
		Rattus norvegicus	RefSeq	GI_62650300-S	ILMN_52797	LOC500614	XM_575985.1	XM_575985.1		500614	62650300	XM_575985.1	LOC500614	XP_575985.1	ILMN_1374246	3130181	S	231	CACTTGGTAGCCCGAGTTGTCAGATGCTGGCTCTACTTTCTCGCGTCTTG					"PREDICTED: Rattus norvegicus similar to Phosphatidylinositol glycan, class F (LOC500614), mRNA."
Molecular function unclassified	Oncogenesis -> Tumor suppressor	Rattus norvegicus	RefSeq	GI_62079282-S	ILMN_289828	ARMCX3	NM_001014273.1	NM_001014273.1		367902	62079282	NM_001014273.1	Armcx3	NP_001014295.1	ILMN_1373755	4210056	S	1541	CCAAACTGACTGAGCGGATGTTCCCAAAGAGCCAGGAATAACTTGGTGGC	X	+	122220654-122220694:122220695-122220703	Xq34	"Rattus norvegicus armadillo repeat containing, X-linked 3 (Armcx3), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"		"The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]"
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Pheromone response	Rattus norvegicus	RefSeq	GI_57114263-S	ILMN_269031	V1RK1	NM_001008951.1	NM_001008951.1		494296	57114263	NM_001008951.1	V1rk1	NP_001008951.1	ILMN_1354546	5080253	S	275	GGGGCCTTTCCCTCTGTACTATCTTGCTGCTGAGTGTATTTCAAGCCATC	1	-	73446659-73446708	1q21	"Rattus norvegicus vomeronasal 1 receptor, K1 (V1rk1), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47577436-S	ILMN_300513	OLR463	NM_001000934.1	NM_001000934.1		405255	47577436	NM_001000934.1	Olr463	NP_001000934.1	ILMN_1354749	60537	S	580	CTCTCTTGCTCTGACACTCGCATTAATGGCATTGTGATCATGGCCTTCTC	3	+	69098416-69098465	3q24	"Rattus norvegicus olfactory receptor 463 (Olr463), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr463	Olr463
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576644-S	ILMN_272353	OLR1688	NM_001000275.1	NM_001000275.1		294164	47576644	NM_001000275.1	Olr1688	NP_001000275.1	ILMN_1365870	380068	S	757	TCAACAGGCATTTGTGCCTTTCTAAACACAACCTCAGACTCTTCAGCTGC	20	+	540831-540880	20p12	"Rattus norvegicus olfactory receptor 1688 (Olr1688), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr20-540075-541079_ORF; Olr1688	ratchr20-540075-541079_ORF; Olr1688
Molecular function unclassified	Oncogenesis -> Tumor suppressor	Rattus norvegicus	RefSeq	GI_62654690-S	ILMN_70298	RGD1305680_PREDICTED	XM_217342.4	XM_217342.4		301235	109485708	XM_217342.4	RGD1305680_predicted	XP_217342.4	ILMN_1358209	5550601	S	2909	CACATGGAGATGCCGTGCCTCGACTCCTTCCAGGACAAAGCCCTGAGGAA	9	+	9378262-9378311	9q12	"PREDICTED: Rattus norvegicus similar to KIAA0240 (predicted) (RGD1305680_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62658752-S	ILMN_277878	LOC368001	XM_001077499.1	XM_001077499.1		368001	109497203	XM_001077499.1	LOC368001	XP_001077499.1	ILMN_1373568	630047	S	687	GGTGCCCCACCCTTGAAGCGATTTTGTGTGGACCAACCTGTAGTGCCGCA				12q12	"PREDICTED: Rattus norvegicus similar to B-cell CLL/lymphoma 7B isoform 1 (LOC368001), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_34855241-S	ILMN_266257	RGD1310803_PREDICTED	XM_001074832.1	XM_001074832.1		361515	109461318	XM_001074832.1	RGD1310803_predicted	XP_001074832.1	ILMN_1363723	5390162	S	1010	GACCTGAGAACCCCCCAAAGAAGAAAGCCATGACCTGGGCCTCAAACAGG				1q21	"PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ10781 (predicted) (RGD1310803_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_21955165-S	ILMN_270378	IIIG9	NM_145786.1	NM_145786.1		252958	21955165	NM_145786.1	Iiig9	NP_665729.1	ILMN_1353844	2060736	S	1203	ACTCGAGGTGGCATCCAGCCCCAGAAAGCAGGAGCCTATGCCCTCAGTGA	1	-	212955576-212955625	1q43	"Rattus norvegicus IIIG9 protein (Iiig9), mRNA."				MGC93144	MGC93144
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62663750-S	ILMN_66543	RGD1560155_PREDICTED	XM_225523.4	XM_225523.4		307067	109505147	XM_225523.4	RGD1560155_predicted	XP_225523.4	ILMN_1374708	1450010	S	4995	GACATACAGACACTCGGGCCACACTCAAAGGAGGAGCCTGATACGGTGGG	17	-	71436992-71437041	17q12.1	"PREDICTED: Rattus norvegicus similar to mKIAA0934 protein (predicted) (RGD1560155_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62646755-S	ILMN_57023	LOC499991	XM_575346.1	XM_575346.1		499991	62646755	XM_575346.1	LOC499991	XP_575346.1	ILMN_1372478	2650451	S	1376	CAGCTGGTTCCAAACTGCGCTCCCTCAACCTCTTGATGCTAGCTCCGCCA				4q12	"PREDICTED: Rattus norvegicus similar to Ab1-219 (LOC499991), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_6978804-S	ILMN_284200	EMD	NM_012948.1	NM_012948.1		25437	6978804	NM_012948.1	Emd	NP_037080.1	ILMN_1362093	730020	S	1109	GCCTCCTAGCCTTATTGCCTCTGACTCTTAGGGTATGGGGATCTGGTGGG	X	-	160351344-160351393	Xq37	"Rattus norvegicus emerin (Emd), mRNA."	"The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IDA]; The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space) [goid 5635] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IDA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]"	The reformation of the nuclear envelope following its breakdown in the context of a normal process [goid 31468] [evidence IEP]	"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]"
Select regulatory molecule -> G-protein -> Small GTPase	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling	Rattus norvegicus	RefSeq	GI_62642644-S	ILMN_54078	RHOBTB3_PREDICTED	XM_226604.4	XM_226604.4		309922	109464183	XM_226604.4	Rhobtb3_predicted	XP_226604.4	ILMN_1351539	2510040	S	1904	GGGAGCTGGCCTCCATGAACCTTGACATTGTGGACTTGCTCAAAAAGGCC	2	-	2919948-2919997	2q11	"PREDICTED: Rattus norvegicus Rho-related BTB domain containing 3 (predicted) (Rhobtb3_predicted), mRNA."
Transporter -> Cation transporter;Transporter -> Other transporter	Transport -> Ion transport -> Cation transport	Rattus norvegicus	RefSeq	GI_19705462-S	ILMN_293887	SLC12A5	NM_134363.1	NM_134363.1		171373	19705462	NM_134363.1	Slc12a5	NP_599190.1	ILMN_1354340	6400333	S	5260	GCCTGGTAGTGAGAAGAGTGTTGCTTTTGTTTCAGCCGACCTATGTGCAG	3	+	156037666-156037715	3q42	"Rattus norvegicus solute carrier family 12 (potassium-chloride transporter), member 5 (Slc12a5), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IDA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of chloride into, out of, within or between cells [goid 6821] [evidence IEA]"	"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: K+(out) + Cl-(out) = K+(in) + Cl-(in) [goid 15379] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: K+(out) + Cl-(out) = K+(in) + Cl-(in) [goid 15379] [evidence ISS]; Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: cation(out) + Cl-(out) = cation(in) + Cl-(in) [goid 15377] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]"	Kcc2	Kcc2
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62718394-S	ILMN_298204	LOC691146	XM_001076998.1	XM_001076998.1		691146	109513598	XM_001076998.1	LOC691146	XP_001076998.1	ILMN_1373314	1780050	S	1525	GCCAGGACAGCCTCAAAGAAAAGTTTGCACAAAGACCCACCCCAGGCTCC	Un|NW_047886.1	+	151934-151983		"PREDICTED: Rattus norvegicus similar to chromosome 9 open reading frame 36 (LOC691146), mRNA."
Miscellaneous function -> Other miscellaneous function protein	Apoptosis -> Inhibition of apoptosis	Rattus norvegicus	RefSeq	GI_62645437-S	ILMN_264722	API5_PREDICTED	XM_001071044.1	XM_001071044.1		362170	109470272	XM_001071044.1	Api5_predicted	XP_001071044.1	ILMN_1357965	360102	S	3262	CCTAGGCTCCCTTGGAATCTGAACAGACAGGAACATGGGATTGCCAGTTG				3q31	"PREDICTED: Rattus norvegicus apoptosis inhibitor 5 (predicted) (Api5_predicted), mRNA."
Miscellaneous function -> Other miscellaneous function protein	Immunity and defense -> Other immune and defense;Miscellaneous	Rattus norvegicus	RefSeq	GI_62666662-S	ILMN_65895	LOC367754	XM_346281.2	XM_346281.2		367754	62666662	XM_346281.2	LOC367754	XP_346282.2	ILMN_1359706	2470707	S	3914	GAGAAAGCACACCAGAACTTCGGTGCTCTGTCGTCTTTATAGCTAATACA				Xq14	"PREDICTED: Rattus norvegicus similar to leucine-rich repeats and calponin homology (CH) domain containing 2 (LOC367754), mRNA."
		Rattus norvegicus	RefSeq	GI_62653731-S	ILMN_67763	LOC501004	XM_576414.1	XM_576414.1		501004	62653731	XM_576414.1	LOC501004	XP_576414.1	ILMN_1348863	1780014	S	853	TTGCAGGAGCTGTCCAGGGTGCTAGATGTTCGGCCATGCCTCGTTCAGGT					"PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S3a (V-fos transformation effector protein) (LOC501004), mRNA."
Select regulatory molecule -> Kinase modulator -> Kinase activator	Carbohydrate metabolism -> Glycogen metabolism	Rattus norvegicus	RefSeq	GI_12018313-S	ILMN_280753	PHKA1	NM_022626.1	NM_022626.1		64561	12018313	NM_022626.1	Phka1	NP_072148.1	ILMN_1365657	3940121	S	3392	AGTCCGTCCTGAACCGTGTGCCTCAGCCAGAGTACCGTCAGCTTCTGGTT	X	-	90554271-90554320	Xq31	"Rattus norvegicus phosphorylase kinase alpha 1 (Phka1), mRNA."	"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane [goid 43231] [evidence ISS]"	"The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence IEA]; The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline [goid 6656] [evidence TAS]; The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein [goid 46777] [evidence IDA]"	"Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: CTP + choline phosphate = diphosphate + CDP-choline [goid 4105] [evidence TAS]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]"	Pcyt1b	Pcyt1b
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47576610-S	ILMN_270808	OLR1673	NM_001000268.1	NM_001000268.1		294143	47576610	NM_001000268.1	Olr1673	NP_001000268.1	ILMN_1362854	2030403	S	408	GAAGCAGCGTAACTGTGTCCTGTTAGTGTCCATTGTGTGGCTGATTGGAA	20	-	196952-197001	20p12	"Rattus norvegicus olfactory receptor 1673 (Olr1673), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1673	Olr1673
Receptor -> Ligand-gated ion channel -> Cyclic nucleotide-gated ion channel;Ion channel -> Ligand-gated ion channel -> Cyclic nucleotide-gated ion channel	Transport -> Ion transport	Rattus norvegicus	RefSeq	GI_16758107-S	ILMN_302341	HCN1	NM_053375.1	NM_053375.1		84390	16758107	NM_053375.1	Hcn1	NP_445827.1	ILMN_1374930	870202	S	2646	CAGCGTGTCACCTTGTTCAGACAGATGTCCTCGGGAGCCATTCCCCCCAA	2	+	49938929-49938978	2q15	"Rattus norvegicus hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 (Hcn1), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IEA]"	"The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; Any process by which a protein is transported to, or maintained in, apical regions of the cell [goid 45176] [evidence ISS]; Any process by which a protein is transported to, or maintained in, apical regions of the cell [goid 45176] [evidence IEA]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Catalysis of facilitated diffusion of a sodium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5272] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate) [goid 30552] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]"
Nucleic acid binding -> Helicase -> RNA helicase;Hydrolase	Nucleoside, nucleotide and nucleic acid metabolism -> RNA catabolism	Rattus norvegicus	RefSeq	GI_62644311-S	ILMN_69579	LOC310880	XM_227717.3	XM_227717.3		310880	62644311	XM_227717.3	LOC310880	XP_227717.3	ILMN_1371983	2360451	S	5617	AGGAAGAAGGGAAGACGGACTGCAGCATGCAAGCCAGTGTGAACCACAGC				2q42	"PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ11331 (predicted) (LOC310880), mRNA."
Miscellaneous function -> Other miscellaneous function protein;Membrane traffic protein -> Other membrane traffic protein	Intracellular protein traffic	Rattus norvegicus	RefSeq	GI_62665748-S	ILMN_64224	CPNE5_PREDICTED	XM_228044.3	XM_228044.3		309650	62665748	XM_228044.3	Cpne5_predicted	XP_228044.3	ILMN_1372080	3840538	S	2192	GAGCAGATAGAGTCCCCTTCCCGATCCTCAAAGGCTCAGTGGTATGCTAG				20p12	"PREDICTED: Rattus norvegicus copine V (predicted) (Cpne5_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62642775-S	ILMN_60599	LOC497750	XM_579364.1	XM_579364.1		497750	62642775	XM_579364.1	LOC497750	XP_579364.1	ILMN_2039002	450474	S	1826	CACTGGTAGAAGATGACGAGGATTTGCCCCACCATGATGAGAAGACGTGG					"PREDICTED: Rattus norvegicus hypothetical gene supported by NM_013005 (LOC497750), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576422-S	ILMN_279615	OLR1581	NM_001000533.1	NM_001000533.1		364054	47576422	NM_001000533.1	Olr1581	NP_001000533.1	ILMN_1362067	2970451	S	432	AGCCTCTTCAGTCTGTGCCATGGGGTTCTTGCTCTCACTAGCCCAGGCTG	13	-	89392134-89392183	13q24	"Rattus norvegicus olfactory receptor 1581 (Olr1581), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1581	Olr1581
Phosphatase -> Carbohydrate phosphatase	Carbohydrate metabolism	Rattus norvegicus	RefSeq	GI_16758953-S	ILMN_277862	FBP2	NM_053716.1	NM_053716.1		114508	16758953	NM_053716.1	Fbp2	NP_446168.1	ILMN_1351099	5270072	S	973	TGTAAAGCCTGAGAGCATTCACCAGCGAGTCCCCCTCATTCTGGGGTCCC	17	+	7841357-7841406	17p14	"Rattus norvegicus fructose-1,6-bisphosphatase 2 (Fbp2), mRNA."	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]	"The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol [goid 6094] [evidence IEA]"	"Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 42132] [evidence ISS]; Catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 42132] [evidence IDA]; Catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate [goid 42132] [evidence IEA]; Catalysis of the reaction: RPO-R' + H2O = RPOOH + R'H. This reaction is the hydrolysis of any phosphoric ester bond, any ester formed from orthophosphoric acid, O=P(OH)3 [goid 42578] [evidence IEA]"	FBPase	FBPase
		Rattus norvegicus	RefSeq	GI_62651328-S	ILMN_58123	LOC362796	XM_343122.2	XM_343122.2		362796	62651328	XM_343122.2	LOC362796	XP_343123.2	ILMN_1352100	5130358	S	357	AACACCCAATACCTGCAAATGGACAGTCTGAGGTCTGAGGACACGGCCAC					"PREDICTED: Rattus norvegicus similar to gamma-2a immunoglobulin heavy chain (LOC362796), mRNA."
	Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_62653273-S	ILMN_67591	NAALAD2_PREDICTED	XM_235877.4	XM_235877.4		300384	109483078	XM_235877.4	Naalad2_predicted	XP_235877.3	ILMN_1368436	6220711	S	2637	GCATATCCAGTGAAAGTGAAAGAGGAAGCAAGCCCAGTGCTCTCAGGCAG	8	-	15768019-15768068	8q12	"PREDICTED: Rattus norvegicus N-acetylated alpha-linked acidic dipeptidase 2 (predicted) (Naalad2_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62642153-S	ILMN_51331	RGD1311595	XM_219779.4	XM_219779.4		309307	109460020	XM_219779.4	RGD1311595	XP_219779.4	ILMN_1369917	4050348	S	6588	ATGCGGAAACATACAGTTCGTGTGTGGGTGTGTGTCTTACTGTACCTTCC	1	-	233433824-233433873	1q52	"PREDICTED: Rattus norvegicus similar to KIAA2026 protein (RGD1311595), mRNA."
Chaperone -> Other chaperones;Membrane traffic protein -> Other membrane traffic protein	Intracellular protein traffic -> Exocytosis -> Regulated exocytosis;Neuronal activities -> Synaptic transmission -> Neurotransmitter release	Rattus norvegicus	RefSeq	GI_56799400-S	ILMN_287813	SNCA	NM_019169.2	NM_019169.2		29219	56799400	NM_019169.2	Snca	NP_062042.1	ILMN_1363385	2650270	S	753	CCCGGTGCTCCCCTCTCACTACAGTGAATACATGGTAGCAGGCTCTTGTG	4	-	89614078-89614127	4q24	"Rattus norvegicus synuclein, alpha (non A4 component of amyloid precursor) (Snca), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence ISS]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]; A cell projection in which the distal end of the axon of a nerve fiber terminates. Sensory nerve endings are classified as either free or encapsulated. The free nerve ending are the most common type of nerve ending, and are most frequently found in the skin [goid 43679] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"The change in morphology and behavior of a microglial cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor [goid 1774] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of a neurotransmitter [goid 1956] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of a neurotransmitter [goid 1956] [evidence ISS]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 1963] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 1963] [evidence ISS]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence ISS]; The chemical reactions and pathways involving neutral lipids, lipids only soluble in solvents of very low polarity [goid 6638] [evidence ISS]; The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence IEA]; The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the mitochondrial membrane, the lipid bilayer surrounding a mitochondrion [goid 7006] [evidence ISS]; Locomotory behavior in a fully developed and mature organism [goid 8344] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of glutamate [goid 14048] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of dopamine [goid 14059] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16044] [evidence ISS]; A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 34599] [evidence ISS]; Any process that modulates the frequency, rate or extent of locomotion of a cell or organism [goid 40012] [evidence IEA]; Any process that modulates the frequency, rate or extent of locomotion of a cell or organism [goid 40012] [evidence ISS]; The chemical reactions and pathways resulting in the formation of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42416] [evidence IEA]; The chemical reactions and pathways resulting in the formation of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42416] [evidence ISS]; The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42417] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; The transfer of electrons through a series of electron donors and acceptors, generating energy that is ultimately used for synthesis of ATP, as it occurs in the mitochondrial inner membrane or chloroplast thylakoid membrane; as in, but not restricted to, the eukaryotes (Eukaryota, ncbi_taxonomy_id:2759) [goid 42775] [evidence ISS]; Any process that modulates the frequency or rate of macrophage activation [goid 43030] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis in neurons [goid 43523] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis in neurons [goid 43524] [evidence ISS]; Any process that modulates the frequency, rate or extent of the regulated release of a neurotransmitter from a cell or group of cells [goid 46928] [evidence ISS]; A change in the behavior of an organism as a result of a cocaine stimulus [goid 48148] [evidence IMP]; A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48168] [evidence ISS]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence IEA]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence ISS]; The directed movement of substances in synaptic membrane-bounded vesicles within the neuron along the cytoskeleton either toward or away from the neuronal cell body [goid 48489] [evidence IEA]; The directed movement of substances in synaptic membrane-bounded vesicles within the neuron along the cytoskeleton either toward or away from the neuronal cell body [goid 48489] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50806] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of acyl-CoA [goid 50812] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]; A process that modulates synaptic plasticity such that synapses are changed resulting in the increase in the rate, or frequency of synaptic transmission at the synapse [goid 60291] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of a neurotransmitter [goid 1956] [evidence IEA]; The process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine [goid 1963] [evidence IEA]; The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester [goid 6644] [evidence IEA]; Any process that modulates the frequency, rate or extent of locomotion of a cell or organism [goid 40012] [evidence IEA]; The chemical reactions and pathways resulting in the formation of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42416] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEA]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence IEA]; The directed movement of substances in synaptic membrane-bounded vesicles within the neuron along the cytoskeleton either toward or away from the neuronal cell body [goid 48489] [evidence IEA]"	"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester [goid 5543] [evidence IDA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with any phospholipase, enzymes that catalyze of the hydrolysis of a glycerophospholipid [goid 43274] [evidence IPI]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IPI]; Interacting selectively with arachidonic acid, a straight chain fatty acid with 20 carbon atoms and four double bonds per molecule. Arachidonic acid is the all-Z-(5,8,11,14)-isomer [goid 50544] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 15590652] [evidence IPI]"	MGC105443	MGC105443
Transfer/carrier protein -> Other transfer/carrier protein	Lipid, fatty acid and steroid metabolism -> Lipid and fatty acid transport;Transport -> Lipid and fatty acid transport	Rattus norvegicus	RefSeq	GI_6981531-S	ILMN_271169	SHBG	NM_012650.1	NM_012650.1		24775	6981531	NM_012650.1	Shbg	NP_036782.1	ILMN_1369448	4070035	S	1136	GGGTACAAGGACAGAGACTGGACATAGACAAAGCCCTGAGCAGAAGCCAG	10	-	56432684-56432733	10q24	"Rattus norvegicus sex hormone binding globulin (Shbg), mRNA."	"That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence TAS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]"	The phase of growth and gene expression that male germ cells undergo as they enter the spermatocyte stage. The cells grow in volume and transcribe most of the gene products needed for the morphological events that follow meiosis [goid 7285] [evidence IMP]	"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]"	Abpa	Abpa
Protease -> Metalloprotease	Protein metabolism and modification -> Proteolysis;Signal transduction -> Cell communication -> Cell adhesion-mediated signaling	Rattus norvegicus	RefSeq	GI_62656028-S	ILMN_275737	RGD1565950_PREDICTED	XM_001071965.1	XM_001071965.1		287899	109490646	XM_001071965.1	RGD1565950_predicted	XP_001071965.1	ILMN_1352450	1090465	S	3851	TCCAGGAGCTCATTAACGCGGCGCAGAGAAAAGAGAAGCCGGGAAAGTTC				10q22	"PREDICTED: Rattus norvegicus similar to A disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 2 (predicted) (RGD1565950_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47576630-S	ILMN_290233	OLR1681	NM_001001006.1	NM_001001006.1		405374	47576630	NM_001001006.1	Olr1681	NP_001001006.1	ILMN_1367923	6510047	S	433	GTGTCCATTATGTGGCTGATTGGCATTTCCTATGCTGTCTCAGAGTCCAC	20	-	290146-290195	20p12	"Rattus norvegicus olfactory receptor 1681 (Olr1681), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1681	Olr1681
Transcription factor -> Basic helix-loop-helix transcription factor;Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Developmental processes -> Ectoderm development -> Neurogenesis	Rattus norvegicus	RefSeq	GI_12083636-S	ILMN_288251	HES3	NM_022687.1	NM_022687.1		64628	12083636	NM_022687.1	Hes3	NP_073178.1	ILMN_1369263	1400056	S	896	TGACTGCAGGGACTCTATCAATCGGTGGCCTGGTGGGGCTGCAGGGAAAT	5	-	169516983-169517032	5q36	"Rattus norvegicus hairy and enhancer of split 3 (Drosophila) (Hes3), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IDA]; The process by which the anatomical structure of the midbrain-hindbrain boundary is generated and organized. Morphogenesis pertains to the creation of form. The midbrain-hindbrain domain of the embryonic brain is comprised of the mesencephalic vesicle and the first rhombencephalic vesicle at early somitogenesis stages. An organizing center at the boundary patterns the midbrain and hindbrain primordia of the neural plate [goid 21555] [evidence ISS]; The process whose specific outcome is the progression of the oculomotor nerve over time, from its formation to the mature structure. This motor nerve innervates all extraocular muscles except the superior oblique and the lateral rectus muscles. The superior division supplies the levator palpebrae superioris and superior rectus muscles. The inferior division supplies the medial rectus, inferior rectus and inferior oblique muscles. This nerve also innervates the striated muscles of the eyelid. Pupillary constriction and lens movement are mediated by this nerve for near vision. In the orbit the inferior division sends branches that enter the ciliary ganglion where they form functional contacts (synapses) with the ganglion cells. The ganglion cells send nerve fibers into the back of the eye where they travel to ultimately innervate the ciliary muscle and the constrictor pupillae muscle [goid 21557] [evidence ISS]; The process whose specific outcome is the progression of the trochlear nerve over time, from its formation to the mature structure. The trochlear nerve is a motor nerve and is the only cranial nerve to exit the brain dorsally. The trochlear nerve innervates the superior oblique muscle [goid 21558] [evidence ISS]; The process by which the anatomical structure of the hindbrain is generated and organized. Morphogenesis pertains to the creation of form. The hindbrain is the region consisting of the medulla, pons and cerebellum. Areas of the hindbrain control motor and autonomic functions [goid 21575] [evidence ISS]; The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium [goid 21915] [evidence ISS]; The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles) [goid 30901] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process controlling the timing and/or rate at which a relatively unspecialized cell acquires features of a neuron [goid 60164] [evidence ISS]"	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62654921-S	ILMN_62874	RGD1564591_PREDICTED	XM_576542.2	XM_576542.2		501125	109485952	XM_576542.2	RGD1564591_predicted	XP_576542.2	ILMN_1358638	870603	S	1304	TCCTACACTGATGCCAGCATCTTAGGCCTGATGGAGCTGTTGTGTCGCGC	9	-	35544817-35544866	9q21	"PREDICTED: Rattus norvegicus similar to chromosome 10 open reading frame 6 (predicted) (RGD1564591_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62654920-S	ILMN_62874	RGD1564591_PREDICTED	XM_576542.2	XM_576542.2		501125	109485952	XM_576542.2	RGD1564591_predicted	XP_576542.2	ILMN_1372571	5910736	S	2039	GTGGCCCAAGGCTCTGGAAGAGAACTGTAGGAGGAGAAGAGTGGAGCCAG	9	-	35507056-35507105	9q21	"PREDICTED: Rattus norvegicus similar to chromosome 10 open reading frame 6 (predicted) (RGD1564591_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62659419-S	ILMN_69801	FAM31B_PREDICTED	XM_222678.3	XM_222678.3		289051	62659419	XM_222678.3	Fam31b_predicted	XP_222678.3	ILMN_1370801	4560736	S	1085	GGACGACATTGACTACAAGCCCACGGTTAAGGAGAACACTGAGAAGCCCT				13q13	"PREDICTED: Rattus norvegicus family with sequence similarity 31, member B (predicted) (Fam31b_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47577744-S	ILMN_301305	OLR1256	NM_001001086.1	NM_001001086.1		405977	47577744	NM_001001086.1	Olr1256	NP_001001086.1	ILMN_1374054	510270	S	756	CGGATCAAGCACATTTATGTATCTTCAGCCCTCCTCAACAGGGTCTATGG	8	+	40816687-40816736	8q22	"Rattus norvegicus olfactory receptor 1256 (Olr1256), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1256	Olr1256
Hydrolase -> Galactosidase	Carbohydrate metabolism -> Other polysaccharide metabolism;Protein metabolism and modification -> Protein modification;Coenzyme and prosthetic group metabolism -> Porphyrin metabolism;Signal transduction	Rattus norvegicus	RefSeq	GI_62667237-S	ILMN_293824	GLA_MAPPED	XM_001068735.1	XM_001068735.1		363494	109512332	XM_001068735.1	Gla_mapped	XP_001068735.1	ILMN_1359658	2510017	S	977	GAGGATGTAATTGCCATCAACCAAGACCCCTTGGGCAAGCAGGGGTACTG				Xq34	"PREDICTED: Rattus norvegicus galactosidase, alpha (mapped) (Gla_mapped), mRNA."
Cytoskeletal protein -> Actin family cytoskeletal protein -> Non-motor actin binding protein	Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_57163990-S	ILMN_295072	CAPZA2	NM_001009180.2	NM_001009180.2		493810	75832146	NM_001009180.2	Capza2	NP_001009180.1	ILMN_1372330	2260026	S	1434	GGCGTGGGAGATGGAGACTAGAGGGCGAGCATTTTCTACACCAGTCACGT	4	+	43328357-43328406	4q21	"Rattus norvegicus capping protein (actin filament) muscle Z-line, alpha 2 (Capza2), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A heterodimer consisting of alpha and a beta subunits that binds to and caps the barbed ends of actin filaments, thereby regulating the polymerization of actin monomers but not severing actin filaments [goid 8290] [evidence IEA]"	"A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins [goid 30036] [evidence IEA]; The binding of a protein or protein complex to the barbed (or plus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits [goid 51016] [evidence IEA]"	"Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]"	MGC124519	MGC124519
Nucleic acid binding -> Ribonucleoprotein	Biological process unclassified	Rattus norvegicus	RefSeq	GI_41055864-S	ILMN_298760	MVP	NM_022715.2	NM_022715.2		64681	41055864	NM_022715.2	Mvp	NP_073206.2	ILMN_1366631	6180050	S	2410	GGCGCAGCAGCTTGCCAATGTGGAGGCAAAGAAGTTCAAGGAGATGACAG	1	-	186165433-186165482	1q36	"Rattus norvegicus major vault protein (Mvp), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A macromolecular complex containing both protein and RNA molecules [goid 30529] [evidence IEA]"		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]
Signaling molecule -> Cytokine -> Interleukin	Signal transduction -> Cell surface receptor mediated signal transduction -> Cytokine and chemokine mediated signaling pathway;Signal transduction -> Cell communication -> Ligand-mediated signaling;Immunity and defense -> Macrophage-mediated immunity;Immunity and defense -> Cytokine/chemokine mediated immunity;Cell cycle -> Cell cycle control;Cell proliferation and differentiation	Rattus norvegicus	RefSeq	GI_8393592-S	ILMN_276941	IL1A	NM_017019.1	NM_017019.1		24493	8393592	NM_017019.1	Il1a	NP_058715.1	ILMN_1356880	5290471	S	1623	CCACATCCGTGGAGCTCTCTTTACATTCTTGTCCTTAGGAGCCCTGCAGT	3	-	116913906-116913955	3q36	"Rattus norvegicus interleukin 1 alpha (Il1a), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IDA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]"	"A rise in body temperature above the normal, often as a response to infection [goid 1660] [evidence IEA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence NAS]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]"	Interacting selectively with the interleukin-1 receptor [goid 5149] [evidence IEA]; Interacting selectively with a Type I interleukin-1 receptor [goid 5150] [evidence NAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	IL-1 alpha	IL-1 alpha
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62638962-S	ILMN_264061	KPTN_PREDICTED	XM_001074187.1	XM_001074187.1		308107	109461292	XM_001074187.1	Kptn_predicted	XP_001074187.1	ILMN_1358639	3450278	S	1273	TGACACGGCTTCGTCATCAAGTGGAGCAGAGGAAACATCAGCAGGGCCTT				1q21	"PREDICTED: Rattus norvegicus kaptin (actin binding protein) (predicted) (Kptn_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62078778-S	ILMN_282619	ORAI3	NM_001014024.1	NM_001014024.1		309000	62078778	NM_001014024.1	Orai3	NP_001014046.1	ILMN_1372045	6840692	S	1562	GGGTTGGGTGAGTTTGAGGGGGAGAATTTAGCCCTTAGAATGCAGAGCTC	1	+	187059111-187059160	1q36	"Rattus norvegicus ORAI calcium release-activated calcium modulator 3 (Orai3), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"
Nucleic acid binding;Transfer/carrier protein -> Other transfer/carrier protein	Nucleoside, nucleotide and nucleic acid metabolism -> Regulation of nucleoside, nucleotide metabolism;Nucleoside, nucleotide and nucleic acid metabolism -> Nucleoside, nucleotide and nucleic acid transport;Transport -> Nucleoside, nucleotide and nucleic acid transport	Rattus norvegicus	RefSeq	GI_62651104-S	ILMN_70120	SKIIP_PREDICTED	XM_234442.4	XM_234442.4		299219	109478553	XM_234442.4	Skiip_predicted	XP_234442.3	ILMN_1374340	5050373	S	737	AGGAGCGGCTACCGGTGGAGGAAGGCCAGGTCAGTGTACGAAGCCTGTAC	6	-	111719528-111719577	6q31	"PREDICTED: Rattus norvegicus SKI interacting protein (predicted) (Skiip_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62647262-S	ILMN_58579	LOC362362	XM_347044.2	XM_347044.2		362362	62647262	XM_347044.2	LOC362362	XP_347045.2	ILMN_1370227	5900280	S	1113	GTGCTGGGAAGGGAGAGAACAAAGAGAAGGGCTGCTACATACCTGCCTCC					"PREDICTED: Rattus norvegicus hypothetical LOC362362 (LOC362362), mRNA."
Transferase -> Glycosyltransferase	Lipid, fatty acid and steroid metabolism -> Lipid metabolism;Protein metabolism and modification -> Protein modification -> Protein glycosylation	Rattus norvegicus	RefSeq	GI_58037556-S	ILMN_268807	ST3GAL4	NM_203337.2	NM_203337.2		363040	58037556	NM_203337.2	St3gal4	NP_976082.1	ILMN_1361562	4570435	S	1902	CAGAAAGACGGAGGCATCAAGAGTGGGAGGGTGTCCTCCAGAGAGGGGTT	8	-	34846060-34846109	8q21	"Rattus norvegicus ST3 beta-galactoside alpha-2,3-sialyltransferase 4 (St3gal4), mRNA."	"A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]"	"The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]"	Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IEA]	siat4c	siat4c
Transferase -> Other transferase	Carbohydrate metabolism -> Other polysaccharide metabolism;Protein metabolism and modification -> Protein modification;Sulfur metabolism;Signal transduction;Immunity and defense;Developmental processes	Rattus norvegicus	RefSeq	GI_34852865-S	ILMN_264031	HS3ST5_PREDICTED	XM_228219.2	XM_228219.2		294449	34852865	XM_228219.2	Hs3st5_predicted	XP_228219.2	ILMN_1351524	4670114	S	735	TCCCATTGAACAGTTTCACATCGTGGACGGGGACCGTCTCATCACCGAGC	20	+	41021624-41021673	20q12	"PREDICTED: Rattus norvegicus heparan sulfate (glucosamine) 3-O-sulfotransferase 5 (predicted) (Hs3st5_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62646585-S	ILMN_289059	SQRDL	XM_001077275.1	XM_001077275.1		362292	109470560	XM_001077275.1	Sqrdl	XP_001077275.1	ILMN_1363347	4570286	S	179	GGGGAAGTGGTGGGATCACCATGGCCACTCGCATGAAGAGGAGAGTTGGA					"PREDICTED: Rattus norvegicus sulfide quinone reductase-like (yeast), transcript variant 1 (Sqrdl), mRNA."
		Rattus norvegicus	RefSeq	GI_62667290-S	ILMN_54490	LOC501627	XM_577025.1	XM_577025.1		501627	62667290	XM_577025.1	LOC501627	XP_577025.1	ILMN_1354885	1770600	S	2694	GAACCCGGGACAACATACGTGCAAGTCATGGCAATTCTTGCTGCGTTCTG					"PREDICTED: Rattus norvegicus similar to LRRGT00088 (LOC501627), mRNA."
Select regulatory molecule -> G-protein -> Small GTPase	Intracellular protein traffic -> General vesicle transport	Rattus norvegicus	RefSeq	GI_57528163-S	ILMN_266647	SAR1B	NM_001009622.1	NM_001009622.1		287276	57528163	NM_001009622.1	Sar1b	NP_001009622.1	ILMN_1357717	780333	S	630	TAAAAAGGCAGGGCTACGGGGAAGGCTTCCGCTGGATGGCGCAGTACATC	10	+	37313072-37313121	10q22	"Rattus norvegicus SAR1 gene homolog B (S. cerevisiae) (Sar1b), mRNA."	"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"	"The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]; The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi [goid 6888] [evidence ISS]; Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals [goid 7264] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16044] [evidence ISS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]"	Sara2; SARA1B	Sara2; SARA1B
Transferase -> Glycosyltransferase	Carbohydrate metabolism -> Other polysaccharide metabolism;Protein metabolism and modification -> Protein modification -> Protein glycosylation	Rattus norvegicus	RefSeq	GI_62648809-S	ILMN_264894	B4GALT1_MAPPED	XM_001058948.1	XM_001058948.1		24390	109476263	XM_001058948.1	B4galt1_mapped	XP_001058948.1	ILMN_1372751	3610167	S	1220	GTCTATATCACGCCCAAATGCTGTGGTAGGCAGGTGTCGCATGATCCGGC				5q22	"PREDICTED: Rattus norvegicus UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 (mapped) (B4galt1_mapped), mRNA."
		Rattus norvegicus	RefSeq	GI_62666174	ILMN_61739	LOC502437	XM_577918.1	XM_577918.1		502437	62666174	XM_577918.1	LOC502437	XP_577918.1	ILMN_1650293	4070520	S	248	GTCCTTGGACGATCTGTCTGCTGGACGGAATCCCGGCGCAGGAAGACGGT					"PREDICTED: Rattus norvegicus similar to putative homeobox protein (LOC502437), mRNA."
Transferase -> Methyltransferase	Protein metabolism and modification -> Protein modification -> Protein methylation;Signal transduction -> Other signal transduction	Rattus norvegicus	RefSeq	GI_54020671-S	ILMN_296365	ICMT	NM_133310.1	NM_133310.1		170818	54020671	NM_133310.1	Icmt	NP_579844.1	ILMN_1363862	3710136	S	1683	TCGAGCGTCCAGGTCCAGCTTTCACGTGGCAACAGGTAGCACAGACCCTT	5	+	169533450-169533499	5q36	"Rattus norvegicus isoprenylcysteine carboxyl methyltransferase (Icmt), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]"	"The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes [goid 1889] [evidence ISS]; The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom [goid 6479] [evidence ISS]; The methylation of the C-terminal amino acid of a protein [goid 6481] [evidence ISS]; The methylation of the C-terminal amino acid of a protein [goid 6481] [evidence IMP]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The increase in size or mass of an entire multicellular organism, as opposed to cell growth [goid 35264] [evidence ISS]; The chemical reactions and pathways involving S-adenosylhomocysteine; the L-enantiomer is formed from S-adenosylmethionine and is a strong inhibitor of S-adenosylmethionine-mediated methylation reactions. It can be cleaved to form adenosine and homocysteine [goid 46498] [evidence IMP]; The chemical reactions and pathways involving S-adenosylmethioninamine, (5-deoxy-5-adenosyl)(3-aminopropyl) methylsulfonium salt [goid 46499] [evidence IMP]; Any process that modulates the frequency, rate or extent of Ras protein signal transduction [goid 46578] [evidence ISS]"	"Catalysis of the reaction: S-adenosyl-L-methionine + protein C-terminal S-farnesyl-L-cysteine = S-adenosyl-L-homocysteine + protein C-terminal S-farnesyl-L-cysteine methyl ester [goid 4671] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine + protein C-terminal S-farnesyl-L-cysteine = S-adenosyl-L-homocysteine + protein C-terminal S-farnesyl-L-cysteine methyl ester [goid 4671] [evidence ISS]; Catalysis of the reaction: S-adenosyl-L-methionine + protein C-terminal S-farnesyl-L-cysteine = S-adenosyl-L-homocysteine + protein C-terminal S-farnesyl-L-cysteine methyl ester [goid 4671] [evidence IMP];  [goid 8140] [evidence ISS]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a methyl group to an acceptor molecule [goid 8168] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]"	MGC95322; fcmt	MGC95322; fcmt
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47577360-S	ILMN_270351	OLR429	NM_001000395.1	NM_001000395.1		296690	47577360	NM_001000395.1	Olr429	NP_001000395.1	ILMN_1359248	6450576	S	770	CAGTGTATATTCGCCCCTCTTCCACCTACTCAGTGACAAAGGACCGAGTG	3	+	16763501-16763550	3q11	"Rattus norvegicus olfactory receptor 429 (Olr429), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr429	Olr429
Oxidoreductase -> Oxygenase	Other metabolism -> Other carbon metabolism	Rattus norvegicus	RefSeq	GI_62649131-S	ILMN_294992	TYRP1_MAPPED	XM_001059355.1	XM_001059355.1		298182	109476608	XM_001059355.1	Tyrp1_mapped	XP_001059355.1	ILMN_1356105	4280471	S	1762	GCACCAAGAATGAAGCCAACCAGCCTCTCCTCACCGATCACTACCAACGC				5q31	"PREDICTED: Rattus norvegicus tyrosinase-related protein 1 (mapped), transcript variant 1 (Tyrp1_mapped), mRNA."
Protease -> Cysteine protease	Protein metabolism and modification -> Proteolysis;Apoptosis	Rattus norvegicus	RefSeq	GI_62651792-S	ILMN_59807	CASP14_PREDICTED	XM_234878.4	XM_234878.4		299587	109480289	XM_234878.4	Casp14_predicted	XP_234878.4	ILMN_1362320	5860014	S	406	TGCAGAGGAGAGCACAGAGACCCCGGTGAGGAACTACCTGGAGATGAACT	7	+	12488074-12488083:12488995-12489034	7q11	"PREDICTED: Rattus norvegicus caspase 14 (predicted) (Casp14_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62660910-S	ILMN_61903	LOC364205	XM_344266.2	XM_344266.2		364205	62660910	XM_344266.2	LOC364205	XP_344267.2	ILMN_1371345	3170458	S	947	CTGCCAGCAGAGGGAACAGTACTTCAACTGCATCCCCGTGGCCTTGAATG				14q22	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA A630050E13 gene (predicted) (LOC364205), mRNA."
		Rattus norvegicus	RefSeq	GI_62659128-S	ILMN_48037	LOC498202	XM_573420.1	XM_573420.1		498202	62659128	XM_573420.1	LOC498202	XP_573420.1	ILMN_1374092	110242	S	51	CCTGCACAGCCAGATACAGATGGAGAAGAGTGTCATGAAGAAGACATTGG					"PREDICTED: Rattus norvegicus similar to LRRGT00004 (LOC498202), mRNA."
		Rattus norvegicus	RefSeq	GI_62664076-S	ILMN_59142	LOC291773	XM_226146.3	XM_226146.3		291773	62664076	XM_226146.3	LOC291773	XP_226146.3	ILMN_1358957	770411	S	2408	AGACAACCCTTCTGCTTCCGGGACTTGCAGCCTAACAGCCACCAGACCAC					"PREDICTED: Rattus norvegicus similar to Transcription initiation factor TFIID 105 kDa subunit (TAFII-105) (TAFII105) (LOC291773), mRNA."
Oxidoreductase -> Oxidase	Amino acid metabolism -> Other amino acid metabolism;Immunity and defense -> Other immune and defense	Rattus norvegicus	RefSeq	GI_40385888-S	ILMN_269797	DOXL1	NM_199233.1	NM_199233.1		312316	40385888	NM_199233.1	Doxl1	NP_954703.1	ILMN_1372891	2340131	S	2100	CTAGAGACACCCAGGTCTGACAACCACAATGACATCGGGCACTGCATCCC	4	+	77028672-77028675:77028676-77028721	4q24	"Rattus norvegicus diamine oxidase-like protein 1 (Doxl1), mRNA."		"The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom [goid 9308] [evidence IEA]"	"Interacting selectively with copper (Cu) ions [goid 5507] [evidence IEA]; Catalysis of the reaction: R-CH2-NH2 + H2O + O2 = R-CHO + NH3 + H2O2 [goid 8131] [evidence IEA]; Interacting selectively with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds [goid 48038] [evidence IEA]"
Transfer/carrier protein	Intracellular protein traffic -> Nuclear transport;Protein targeting and localization -> Protein targeting	Rattus norvegicus	RefSeq	GI_62666066-S	ILMN_273070	KPNA5	NM_001025113.1	NM_001025113.1		294392	68341940	NM_001025113.1	Kpna5	NP_001020284.1	ILMN_1374811	4480465	S	1518	GGATGACCCTAGTCTCGTTCCTCAGGTGGATGAGCAGCAGCGGCAGTTTC	20	+	30197386-30197435	20q11	"Rattus norvegicus karyopherin alpha 5 (importin alpha 6) (Kpna5), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"The directed movement of a protein from the cytoplasm to the nucleus [goid 6606] [evidence IEA]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]"	"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]"	Ipoa6	Ipoa6
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_62659944-S	ILMN_296283	RGD1563431_PREDICTED	XM_001063124.1	XM_001063124.1		501876	109499183	XM_001063124.1	RGD1563431_predicted	XP_001063124.1	ILMN_2040666	7330056	S	296	AACATTTTGAACTAGGAGGTGACAAGAAGAGAAAGGGCCAAGTGATCCAG					"PREDICTED: Rattus norvegicus similar to large subunit ribosomal protein L36a (predicted) (RGD1563431_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47577828-S	ILMN_293915	OLR120	NM_001000154.1	NM_001000154.1		293256	47577828	NM_001000154.1	Olr120	NP_001000154.1	ILMN_1364365	670273	S	333	CATGGAGTCCTCCGTTCTACTCGCCATGTCCTTTGACTGCTACATTGCCA	1	-	161441050-161441099	1q32	"Rattus norvegicus olfactory receptor 120 (Olr120), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr120	Olr120
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576884-S	ILMN_299559	OLR223	NM_001000202.1	NM_001000202.1		293369	47576884	NM_001000202.1	Olr223	NP_001000202.1	ILMN_1375065	4760619	S	738	GGTCATCTTCTACACAGCTGTGATCTTCATGTACGTCCGACCTCGGGCCA	1	-	164225449-164225498	1q33	"Rattus norvegicus olfactory receptor 223 (Olr223), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr223	Olr223
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576836	ILMN_278297	OLR821	NM_001000842.1	NM_001000842.1		405131	47576836	NM_001000842.1	Olr821	NP_001000842.1	ILMN_1651008	5220736	S	369	TGCTATCTGCCACCCGCTACACTACTCTGTCATCATGAACTGGAGAGCGT	4	+	70988683-70988732	4q23	"Rattus norvegicus olfactory receptor 821 (Olr821), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr821	Olr821
Select regulatory molecule -> Kinase modulator -> Kinase activator	Signal transduction -> Intracellular signaling cascade -> JNK cascade	Rattus norvegicus	RefSeq	GI_16758613-S	ILMN_289974	MAPK8IP1	NM_053777.1	NM_053777.1		116457	16758613	NM_053777.1	Mapk8ip1	NP_446229.1	ILMN_1361763	4560309	S	2720	CTCATGCTGAGCCCAAGCACCTCCGAAGGACTTTCCAGTAAGGAAATGGC	3	-	76781726-76781775	3q24	"Rattus norvegicus mitogen-activated protein kinase 8 interacting protein 1 (Mapk8ip1), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [pmid 9442013] [evidence IDA]"	"Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence IDA]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence TAS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]; The process of introducing a phosphate group into a JUN protein [goid 7258] [evidence ISS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of JUN kinase activity [goid 43508] [evidence IMP]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46328] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46329] [evidence IMP]; Any process that modulates the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46328] [evidence ISS]"	"Functions as a physical support for the assembly of a multiprotein mitogen-activated protein kinase (MAPK) complex. MAPK scaffold proteins have binding sites for MAPK pathway kinases as well as for upstream signaling proteins [goid 5078] [evidence IMP]; Functions as a physical support for the assembly of a multiprotein mitogen-activated protein kinase (MAPK) complex. MAPK scaffold proteins have binding sites for MAPK pathway kinases as well as for upstream signaling proteins [goid 5078] [evidence ISS]; Functions as a physical support for the assembly of a multiprotein mitogen-activated protein kinase (MAPK) complex. MAPK scaffold proteins have binding sites for MAPK pathway kinases as well as for upstream signaling proteins [goid 5078] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with JUN kinase, an enzyme that catalyzes the phosphorylation and activation of members of the JUN family [goid 8432] [evidence IPI]; Interacting selectively and stoichiometrically with kinesin, a cytoplasmic protein responsible for moving vesicles and organelles towards the distal end of microtubules [goid 19894] [evidence ISS]; Interacting selectively and stoichiometrically with kinesin, a cytoplasmic protein responsible for moving vesicles and organelles towards the distal end of microtubules [goid 19894] [evidence ISS]; Interacting selectively and stoichiometrically with kinesin, a cytoplasmic protein responsible for moving vesicles and organelles towards the distal end of microtubules [goid 19894] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IEA]; Interacting selectively with a mitogen-activated protein kinase kinase, any protein that can phosphorylate a MAP kinase [goid 31434] [evidence IPI]; Interacting selectively with a mitogen-activated protein kinase kinase, any protein that can phosphorylate a MAP kinase [goid 31434] [evidence IPI]; Interacting selectively with a mitogen-activated protein kinase kinase kinase, any protein that can phosphorylate a MAP kinase kinase [goid 31435] [evidence IPI]; Functions as a physical support for the assembly of a multiprotein mitogen-activated protein kinase (MAPK) complex. MAPK scaffold proteins have binding sites for MAPK pathway kinases as well as for upstream signaling proteins [goid 5078] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively and stoichiometrically with kinesin, a cytoplasmic protein responsible for moving vesicles and organelles towards the distal end of microtubules [goid 19894] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IEA]; Functions as a physical support for the assembly of a multiprotein mitogen-activated protein kinase (MAPK) complex. MAPK scaffold proteins have binding sites for MAPK pathway kinases as well as for upstream signaling proteins [goid 5078] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively and stoichiometrically with kinesin, a cytoplasmic protein responsible for moving vesicles and organelles towards the distal end of microtubules [goid 19894] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]"	Mapk8ip1; Jip-1	Mapk8ip1; Jip-1
Select regulatory molecule -> Kinase modulator -> Kinase inhibitor	Signal transduction -> Cell surface receptor mediated signal transduction -> Cytokine and chemokine mediated signaling pathway	Rattus norvegicus	RefSeq	GI_22024395-S	ILMN_266811	SOCS1	NM_145879.1	NM_145879.1		252971	22024395	NM_145879.1	Socs1	NP_665886.1	ILMN_1371295	4570537	S	346	CTCAGCGTGAAGATGGCTTCGGGCCCCACGAGCATTCGTGTGCACTTCCA	10	+	4820316-4820365	10q11	"Rattus norvegicus suppressor of cytokine signaling 1 (Socs1), mRNA."	"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]"	"Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein [goid 1932] [evidence ISS]; Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein [goid 1932] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of cytokines to their cognate receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes [goid 7259] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence ISS]; Any series of molecular signals generated as a consequence of a cytokine or chemokine binding to a cell surface receptor [goid 19221] [evidence IEA]; The regrowth of a lost or destroyed organ [goid 31100] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus [goid 32570] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat3 protein [goid 42518] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat3 protein [goid 42518] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; The process whereby a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat [goid 45444] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat [goid 45444] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the JAK-STAT signaling pathway activity [goid 46426] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the JAK-STAT signaling pathway activity [goid 46426] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of insulin receptor signaling [goid 46627] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of insulin receptor signaling [goid 46627] [evidence IEA]"	"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with the insulin-like growth factor receptor [goid 5159] [evidence ISS]; Interacting selectively with the insulin-like growth factor receptor [goid 5159] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Stops, prevents or reduces the activity of a kinase, an enzyme which catalyzes of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 19210] [evidence ISS]; Stops, prevents or reduces the activity of a kinase, an enzyme which catalyzes of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 19210] [evidence IEA]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence ISS]; Interacting selectively with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate [goid 19901] [evidence IEA]"	Socs-1; Cish1	Socs-1; Cish1
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576674-S	ILMN_274903	OLR1699	NM_001001112.1	NM_001001112.1		406011	47576674	NM_001001112.1	Olr1699	NP_001001112.1	ILMN_1367357	2340731	S	252	ACCCAAGATGCTGCAGAGTCTTGTGAGTGAGGTCCGAGAGATCTCTCAGG	20	-	738785-738834	20p12	"Rattus norvegicus olfactory receptor 1699 (Olr1699), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	SCR D-9; Olr1699	SCR D-9; Olr1699
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62651885-S	ILMN_64538	CKAP4_PREDICTED	XM_343189.3	XM_343189.3		362859	109480397	XM_343189.3	Ckap4_predicted	XP_343190.1	ILMN_1370644	3840044	S	2572	CGTGTGCTGCATGTGTTCTCACTGTACCCTCGCCCCTTTGAGAGGTATTG	7	+	21368229-21368278	7q13	"PREDICTED: Rattus norvegicus cytoskeleton-associated protein 4 (predicted) (Ckap4_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47576120-S	ILMN_278476	OLR1389	NM_001000000.1	NM_001000000.1		287240	47576120	NM_001000000.1	Olr1389	NP_001000000.1	ILMN_1368984	3850129	S	474	CCAGACAGGTCTCATGATGGCCATGCCTCTCTGCAGGTATCGGCTGAATC	10	+	34765947-34765996	10q21	"Rattus norvegicus olfactory receptor 1389 (Olr1389), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1389	Olr1389
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62655171-S	ILMN_70220	LOC367289	XM_346058.3	XM_346058.3		367289	109486119	XM_346058.3	LOC367289	XP_346059.3	ILMN_1367936	2850180	S	2464	AATACTTACTCCACGCTGGAGGATGGTTGTTCTTCAGCCCCTTGATGAAC	9	-	65495122-65495157:65496370-65496383	9q32	"PREDICTED: Rattus norvegicus similar to CG4699-PA, isoform A (LOC367289), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]"	"The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62655169-S	ILMN_70220	LOC367289	XM_346058.3	XM_346058.3		367289	109486119	XM_346058.3	LOC367289	XP_346059.3	ILMN_1357898	3060136	S	4701	AGCAGTTTCTGGTGGGCACTGCTGCTCTGACTACAAACAGAGCTCCTGAG	9	-	65489720-65489769	9q32	"PREDICTED: Rattus norvegicus similar to CG4699-PA, isoform A (LOC367289), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]"	"The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]"
Protease -> Cysteine protease	Protein metabolism and modification -> Proteolysis;Signal transduction	Rattus norvegicus	RefSeq	GI_50657399-S	ILMN_302015	CAPN11	NM_001002806.2	NM_001002806.2		408218	76563949	NM_001002806.2	Capn11	NP_001002806.2	ILMN_1370111	6110195	S	1832	CGCCGTATGGTCAACCTCATGGACAAAGACGATTCTGGAAAGCTGGGGCT	9	+	10962646-10962669:10962940-10962965	9q12	"Rattus norvegicus calpain 11 (Capn11), mRNA."	"A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome [goid 1669] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]"	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	"Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]"
		Rattus norvegicus	RefSeq	GI_62652149-S	ILMN_54542	LOC503132	XM_578653.1	XM_578653.1		503132	62652149	XM_578653.1	LOC503132	XP_578653.1	ILMN_1370690	5290402	S	329	GGTCCTATGGATGCTCCAGAAGGGTGGTGATTCCTGTGATCTCAACTGTG					"PREDICTED: Rattus norvegicus similar to ribosomal protein S2 (LOC503132), mRNA."
Select regulatory molecule -> Protease inhibitor -> Cysteine protease inhibitor	Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_38371731-S	ILMN_287616	CYSS	NM_198685.1	NM_198685.1		296234	38371731	NM_198685.1	Cyss	NP_941958.1	ILMN_1368824	3440452	S	93	GGGTGGCATAGAGAAGTCTAGCATGGAGGAGGAAGGAGCCTCAGAAGCAT	3	-	138830821-138830870	3q41	"Rattus norvegicus cystatin S (Cyss), mRNA."	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		 [goid 4869] [evidence TAS];  [goid 4869] [evidence IEA]	Cst4	Cst4
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62652027-S	ILMN_48715	RGD1564046_PREDICTED	XM_576213.2	XM_576213.2		500823	109480473	XM_576213.2	RGD1564046_predicted	XP_576213.2	ILMN_1371517	6980594	S	994	CTGGTCAAAGTGGAGTCTCGCCTGGTGGAGCTGAGCGACCTCATTGAATC	7	+	30641348-30641397	7q13	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933417K05 gene (predicted) (RGD1564046_predicted), mRNA."
Transporter -> Cation transporter	Transport -> Ion transport -> Cation transport;Homeostasis	Rattus norvegicus	RefSeq	GI_6981559-S	ILMN_276551	SLC9A2	NM_012653.1	NM_012653.1		24783	6981559	NM_012653.1	Slc9a2	NP_036785.1	ILMN_1360608	510133	S	3515	CCGCCTGGGTTTTATGTGTGTGGTGATGGGAGGAAAGGGAGGTGGTTCCT	9	+	39915822-39915871	9q21	"Rattus norvegicus solute carrier family 9 (sodium/hydrogen exchanger), member 2 (Slc9a2), mRNA."	"The region of the plasma membrane located at the apical end of the cell [goid 16324] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence ISS]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence IEA]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence IEA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]"	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence ISS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out) [goid 15299] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IEA]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]	Nhe2	Nhe2
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62648315-S	ILMN_284096	RGD1304592_PREDICTED	XM_001073101.1	XM_001073101.1		362461	109474444	XM_001073101.1	RGD1304592_predicted	XP_001073101.1	ILMN_1348920	1770086	S	3254	GTGTCTCCATTGTTTGTCAGCGTCTTCTCAGACCAGAGGGCCCAGCGAGG				4q44	"PREDICTED: Rattus norvegicus similar to KIAA0528 protein (predicted) (RGD1304592_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62666973-S	ILMN_58796	LOC302645	XM_228895.2	XM_228895.2		302645	62666973	XM_228895.2	LOC302645	XP_228895.2	ILMN_1356338	2190465	S	141	GTCAGGTCTCAAGGAACTGAGATCCTGGGAAGGGGGAGTTTGACTGGAGA				Xq22	"PREDICTED: Rattus norvegicus similar to Magea5 (LOC302645), mRNA."
Transferase -> Acyltransferase	Protein metabolism and modification -> Protein biosynthesis;Protein metabolism and modification -> Protein modification -> Protein-lipid modification;Signal transduction -> Cell surface receptor mediated signal transduction -> Other receptor mediated signaling pathway;Signal transduction -> Cell communication;Developmental processes -> Embryogenesis;Developmental processes -> Segment specification;Other metabolism	Rattus norvegicus	RefSeq	GI_62654512-S	ILMN_60816	GUP1_PREDICTED	XM_217299.4	XM_217299.4		301073	109484092	XM_217299.4	Gup1_predicted	XP_217299.3	ILMN_1375067	2230452	S	1701	CTGGAGGAAGAGCAGAGGCAGGACAAAGAGAAGCTGGAGTAGAGGTGGGG	8	+	127153131-127153172:127153173-127153180	8q32	"PREDICTED: Rattus norvegicus Gup1, glycerol uptake/transporter homolog (yeast) (predicted) (Gup1_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62644202-S	ILMN_64351	RGD1310037_PREDICTED	XM_345273.3	XM_345273.3		365903	109465457	XM_345273.3	RGD1310037_predicted	XP_345274.3	ILMN_1367554	3870746	S	1393	CTGAGGTTATTCGTGGGACCTGGGGGAAGTACAACCTTCGGCAGCCACCA	2	-	204575783-204575832	2q34	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA C230093N12 (predicted) (RGD1310037_predicted), mRNA."
Transferase -> Other transferase	Lipid, fatty acid and steroid metabolism -> Fatty acid metabolism;Immunity and defense -> Detoxification;Muscle contraction	Rattus norvegicus	RefSeq	GI_56799410-S	ILMN_290441	PTGDS2	NM_031644.2	NM_031644.2		58962	56799410	NM_031644.2	Ptgds2	NP_113832.1	ILMN_1371397	1580707	S	828	GCAGCACCACACTTTTGGTCTTAAAGCCCGACCTGTTGGGCATCTACCCC	4	-	94611904-94611953	4q31	"Rattus norvegicus prostaglandin D2 synthase 2, hematopoietic (Ptgds2), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"The chemical reactions and pathways resulting in the formation of prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring [goid 1516] [evidence TAS]; The chemical reactions and pathways resulting in the formation of prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring [goid 1516] [evidence IEA]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; The chemical reactions and pathways involving prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring due to the formation of a bond between two carbons of a fatty acid. They have a wide range of biological activities [goid 6693] [evidence ISS]"	"Catalysis of the reaction: (5Z,13E)-(15S)-9-alpha,11-alpha-epidioxy-15-hydroxyprosta-5,13-dienoate = (5Z,13E)-(15S)-9-alpha,15-dihydroxy-11-oxoprosta-5,13-dienoate [goid 4667] [evidence TAS]; Catalysis of the reaction: (5Z,13E)-(15S)-9-alpha,11-alpha-epidioxy-15-hydroxyprosta-5,13-dienoate = (5Z,13E)-(15S)-9-alpha,15-dihydroxy-11-oxoprosta-5,13-dienoate [goid 4667] [evidence IEA]; Catalysis of the reaction: (5Z,13E)-(15S)-9-alpha,11-alpha-epidioxy-15-hydroxyprosta-5,13-dienoate = (5Z,13E)-(15S)-9-alpha,15-dihydroxy-11-oxoprosta-5,13-dienoate [goid 4667] [evidence ISS]; Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5 [goid 16853] [evidence IEA]"	MGC105397	MGC105397
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576782-S	ILMN_269553	OLR831	NM_001000899.1	NM_001000899.1		405209	47576782	NM_001000899.1	Olr831	NP_001000899.1	ILMN_1353125	6370022	S	315	CGGGGCATTTGGTTTTCTTCTTATAGCTGTGATGTCAGTGGACAGGTGTG	4	-	152905053-152905102	4q42	"Rattus norvegicus olfactory receptor 831 (Olr831), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr831	Olr831
Receptor;Extracellular matrix	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62661704-S	ILMN_56787	LGI3_PREDICTED	XM_224337.4	XM_224337.4		306013	109501862	XM_224337.4	Lgi3_predicted	XP_224337.4	ILMN_1367471	2450100	S	2940	GGCAAGAATCCTGGGAGAGCCTGTATGGGTGCCAGGAACGTGTTGGTAGC	15	+	50938976-50939025	15p11	"PREDICTED: Rattus norvegicus leucine-rich repeat LGI family, member 3 (predicted) (Lgi3_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62638648-S	ILMN_60051	LOC499045	XM_579913.1	XM_579913.1		499045	62638648	XM_579913.1	LOC499045	XP_579913.1	ILMN_1355856	1580538	S	684	TCTCAGTGCCTACACTTTCAAAGGACCTTCACTGTCACAGAACCGGCACT					"PREDICTED: Rattus norvegicus LOC499045 (LOC499045), mRNA."
Defense/immunity protein -> Complement component	Immunity and defense -> Complement-mediated immunity	Rattus norvegicus	RefSeq	GI_56090623-S	ILMN_289947	C1QTNF1	NM_001007675.1	NM_001007675.1		303701	56090623	NM_001007675.1	C1qtnf1	NP_001007676.1	ILMN_1365038	4120300	S	1315	CTGGCTGCCGATGGATGAGATCATTGGGCGGGGAGACTGTGTGGACATTG	10	+	108451879-108451928	10q32.3	"Rattus norvegicus C1q and tumor necrosis factor related protein 1 (C1qtnf1), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]"	"The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence ISS]"		MGC94614	MGC94614
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62663382-S	ILMN_51382	RGD1564907_PREDICTED	XM_579866.2	XM_579866.2		498723	109504796	XM_579866.2	RGD1564907_predicted	XP_579866.2	ILMN_1365993	3870131	S	680	CTCCAGAGACAGGGTGTTGAGGAAGGAGAGGTGTCTACATAAGCTCCCCC	17	+	26348638-26348687	17p12	"PREDICTED: Rattus norvegicus RGD1564907 (predicted) (RGD1564907_predicted), mRNA."
Signaling molecule -> Cytokine -> Interferon	Signal transduction -> Cell surface receptor mediated signal transduction -> Cytokine and chemokine mediated signaling pathway;Signal transduction -> Intracellular signaling cascade -> MAPKKK cascade;Signal transduction -> Intracellular signaling cascade -> NF-kappaB cascade;Signal transduction -> Intracellular signaling cascade -> JAK-STAT cascade;Signal transduction -> Cell communication -> Ligand-mediated signaling;Immunity and defense -> T-cell mediated immunity;Immunity and defense -> Macrophage-mediated immunity;Immunity and defense -> Interferon-mediated immunity;Immunity and defense -> Cytokine/chemokine mediated immunity;Apoptosis -> Induction of apoptosis;Apoptosis -> Inhibition of apoptosis	Rattus norvegicus	RefSeq	GI_62649199-S	ILMN_268298	RGD1564897_PREDICTED	XM_578467.1	XM_578467.1		502962	62649199	XM_578467.1	RGD1564897_predicted	XP_578467.1	ILMN_1363998	1740408	S	92	ACCTCAGAAACAAGAGAGCCTTCACACTCCTGGCACAAATGAAGAGACTC	5	-	108085317-108085366	5q32	"PREDICTED: Rattus norvegicus similar to Interferon alpha-1 precursor (predicted) (RGD1564897_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62661908-S	ILMN_67784	LOC364495	XM_344472.2	XM_344472.2		364495	62661908	XM_344472.2	LOC364495	XP_344473.2	ILMN_1369831	2640731	S	29	TGAAAATCTACTGTGCCTTCCTCCTCGGGTGAGAGGAGATGGGGTTGAGC				15p14	"PREDICTED: Rattus norvegicus similar to T-cell receptor alpha chain - mouse (LOC364495), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62659745-S	ILMN_285279	VANGL2_PREDICTED	XM_001056450.1	XM_001056450.1		289229	109499062	XM_001056450.1	Vangl2_predicted	XP_001056450.1	ILMN_1351962	2640538	S	4503	GCTAAGCACACCCGGAGATGGGGGTACCTCTGGTCTCACCGTCAGGCTGT				13q24	"PREDICTED: Rattus norvegicus vang-like 2 (van gogh, Drosophila) (predicted) (Vangl2_predicted), mRNA."
Lyase -> Cyclase -> Guanylate cyclase	Nucleoside, nucleotide and nucleic acid metabolism -> Metabolism of cyclic nucleotides	Rattus norvegicus	RefSeq	GI_6981281-S	ILMN_291868	NPR3	NM_012868.1	NM_012868.1		25339	6981281	NM_012868.1	Npr3	NP_037000.1	ILMN_1349272	1500079	S	1430	GGCCTAGAAGAATCAGCAGTGACAGGAATTGTTGTGGGGGCCCTACTAGG	2	-	61279470-61279519	2q16	"Rattus norvegicus natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C) (Npr3), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"	"The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7193] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of adenylate cyclase activity [goid 7194] [evidence IDA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by the activation of phospholipase C and the subsequent release of inositol trisphosphate [goid 7200] [evidence IMP]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IMP]; The regulated release of pancreatic juice by the exocrine pancreas into the upper part of the intestine. Pancreatic juice is slightly alkaline and contains numerous enzymes and inactive enzyme precursors including alpha-amylase, chymotrypsinogen, lipase, procarboxypeptidase, proelastase, prophospholipase A2, ribonuclease, and trypsinogen. Its high concentration of bicarbonate ions helps to neutralize the acid from the stomach [goid 30157] [evidence IMP]; A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [evidence IMP]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular peptide to initiate a G-protein mediated change in cell activity. A G-protein is a signal transduction molecule that alternates between an inactive GDP-bound and an active GTP-bound state [goid 8528] [evidence IEA];  [goid 16941] [evidence IMP]; Interacting selectively with any peptide with hormonal activity in animals [goid 17046] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an extracellular or intracellular peptide to initiate a G-protein mediated change in cell activity. A G-protein is a signal transduction molecule that alternates between an inactive GDP-bound and an active GTP-bound state [goid 8528] [evidence IEA]	ANP-CR; NPRC	ANP-CR; NPRC
Molecular function unclassified	Nucleoside, nucleotide and nucleic acid metabolism	Rattus norvegicus	RefSeq	GI_62652446-S	ILMN_69695	LOC299949	XM_216928.4	XM_216928.4		299949	109480739	XM_216928.4	LOC299949	XP_216928.4	ILMN_1365019	6660484	S	3177	TCCGATCTTCTCAAGAATGTGCGAGATCTTCGCAGGGGACTCACAGCCCG	7	+	94676667-94676716	7q33	"PREDICTED: Rattus norvegicus similar to WD-repeat protein 67 (Protein 4-B-3) (LOC299949), mRNA."
Transferase -> Acyltransferase	Lipid, fatty acid and steroid metabolism -> Fatty acid metabolism	Rattus norvegicus	RefSeq	GI_62654041-S	ILMN_292040	ELOVL4_PREDICTED	XM_001062735.1	XM_001062735.1		315851	109485075	XM_001062735.1	Elovl4_predicted	XP_001062735.1	ILMN_1353380	1410450	S	2864	GCAGCACATGAAATAGTACGGTCTAAGAGGATCACCACGTTGTCTTTCGC				8q31	"PREDICTED: Rattus norvegicus elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4 (predicted) (Elovl4_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62657436-S	ILMN_63663	LOC501749	XM_577150.1	XM_577150.1		501749	62657436	XM_577150.1	LOC501749	XP_577150.1	ILMN_1351624	5890053	S	468	TCCACTGTGCTAGCCTTCCTGCCCTCCAAGCACCACGAAGAAGAGGCGCA					"PREDICTED: Rattus norvegicus similar to thymosin beta10,Arg (LOC501749), mRNA."
Molecular function unclassified	Protein metabolism and modification -> Protein biosynthesis;Intracellular protein traffic;Protein targeting and localization -> Protein targeting	Rattus norvegicus	RefSeq	GI_62644296-S	ILMN_264414	TRAM1L1_PREDICTED	XM_001075640.1	XM_001075640.1		310846	109467572	XM_001075640.1	Tram1l1_predicted	XP_001075640.1	ILMN_1352607	2190546	S	1314	GCGAATCTTCATGTCTGTGGGAGGAAGAGACGGTCCAGGTCGAGAAAAGG				2q42	"PREDICTED: Rattus norvegicus translocation associated membrane protein 1-like 1 (predicted) (Tram1l1_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62651549-S	ILMN_69426	LOC299466	XM_234744.3	XM_234744.3		299466	62651549	XM_234744.3	LOC299466	XP_234744.3	ILMN_1357861	2650072	S	269	GACTGTGTTCAAAATAGTTTCAGCTCCTAAGAGTCAGCCAGGTCCTGAGC					"PREDICTED: Rattus norvegicus similar to immunoglobulin heavy chain variable region (LOC299466), mRNA."
		Rattus norvegicus	RefSeq	GI_62718711-S	ILMN_55539	LOC367363	XM_346105.2	XM_346105.2		367363	62718711	XM_346105.2	LOC367363	XP_346106.2	ILMN_1373911	5290164	S	78	GGCCTAGATGGATGGGCAAGTAGTTCTGGGAAGATTGCTGACTGTAGCCA					"PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC367363), mRNA."
		Rattus norvegicus	RefSeq	GI_62647398-S	ILMN_65056	LOC362382	XM_342706.2	XM_342706.2		362382	62647398	XM_342706.2	LOC362382	XP_342707.2	ILMN_1359542	6400280	S	876	CAAGCCATAACAAAAACCCCCATGGGAAGCAGAAACCAGATGTTGGGCTG				4q31	"PREDICTED: Rattus norvegicus similar to immunoglobulin 4G6 light chain variable region (LOC362382), mRNA."
Transcription factor -> Other transcription factor;Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription	Rattus norvegicus	RefSeq	GI_62652147-S	ILMN_54450	SPIC_PREDICTED	XM_235019.4	XM_235019.4		314711	109480437	XM_235019.4	Spic_predicted	XP_235019.3	ILMN_1359198	5900338	S	784	GGCAACCGGAAACCCATGACTTACCAGAAGATGGCCAGAGCCCTGAGGAA	7	-	25354971-25355020	7q13	"PREDICTED: Rattus norvegicus Spi-C transcription factor (Spi-1/PU.1 related) (predicted) (Spic_predicted), mRNA."
Select calcium binding protein -> Calmodulin related protein	Signal transduction -> Intracellular signaling cascade -> Calcium mediated signaling;Cell cycle;Cell proliferation and differentiation	Rattus norvegicus	RefSeq	GI_8394167-S	ILMN_281293	CALM2	NM_017326.1	NM_017326.1		50663	8394167	NM_017326.1	Calm2	NP_059022.1	ILMN_1370405	3710021	S	826	GGAACCGTCGGCATGTTGCTGTTGAAGTGTGGAGTTGTGAGCGTGGACTG	15	-	64161876-64161925	15q12	"Rattus norvegicus calmodulin 2 (Calm2), mRNA."	"Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules [goid 922] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart [goid 5819] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole [goid 5876] [evidence ISS]"	"The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Any process that modulates the frequency, rate or extent of the division of the cytoplasm of a cell and its separation into two daughter cells [goid 32465] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA binding, selective interaction with deoxyribonucleic acid [goid 43388] [evidence IEA]"	"Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence ISS]; Interacting selectively with the N-terminus of a protein that has the potential to be, or has been, modified by N-terminal myristoylation. Binding affinity is typically altered by myristoylation; for example, N-terminal myristoylation of HIV Nef increases its affinity for calmodulin [goid 31997] [evidence IEA]; Interacting selectively with the N-terminus of a protein that has the potential to be, or has been, modified by N-terminal myristoylation. Binding affinity is typically altered by myristoylation; for example, N-terminal myristoylation of HIV Nef increases its affinity for calmodulin [goid 31997] [evidence ISS]"
		Rattus norvegicus	RefSeq	GI_62647751-S	ILMN_58837	LOC500245	XM_575595.1	XM_575595.1		500245	62647751	XM_575595.1	LOC500245	XP_575595.1	ILMN_1353327	6770411	S	1390	CGAAGGAATGGCCGTGTCTGAATGTGGCTGTAGATAGGGGAGGAGAGGCG				4q34	"PREDICTED: Rattus norvegicus similar to bone morphogenetic protein 10 (LOC500245), mRNA."
		Rattus norvegicus	RefSeq	GI_62647217-S	ILMN_56294	LOC297077	XM_216137.3	XM_216137.3		297077	62647217	XM_216137.3	LOC297077	XP_216137.3	ILMN_1350379	360093	S	1387	TGTAAACACCTGACTGGGTGTGCAGGGTGAGGGGGTAGGGTCTGTCTCCT				4q24	"PREDICTED: Rattus norvegicus hypothetical LOC297077 (predicted) (LOC297077), mRNA."
		Rattus norvegicus	RefSeq	GI_62651180-S	ILMN_266311	RGD1309028_PREDICTED	XR_008354.1	XR_008354.1		299265	109479889	XR_008354.1	RGD1309028_predicted		ILMN_1369738	5570332	S	787	GATGTCTGGGGTATCCCTGGTAGGCAGTCTTGACGCTTGGAGCTACTGCC				6q32	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA A830059I20 (predicted) (RGD1309028_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Neuronal activities	Rattus norvegicus	RefSeq	GI_6981283-S	ILMN_265899	NPY5R	NM_012869.1	NM_012869.1		25340	6981283	NM_012869.1	Npy5r	NP_037001.1	ILMN_1374777	3870095	S	1546	GAGAGCCCTTATCCACTGCCTACACATGTCATGATTCTCTCTGTGCACCA	16	+	24772264-24772297:24772298-24772313	16p14	"Rattus norvegicus neuropeptide Y receptor Y5 (Npy5r), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"Any process that activates or increases the frequency, rate, or extent of an acute inflammatory response [goid 2675] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of glutamate [goid 14050] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32229] [evidence IMP]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence IMP]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]; The process which controls the timing of the type of sexual cycle seen in female mammals [goid 60112] [evidence IMP]"	Combining with gut peptide YY to initiate a change in cell activity [goid 1601] [evidence ISS]; Combining with gut peptide YY to initiate a change in cell activity [goid 1601] [evidence IDA]; Combining with gut peptide YY to initiate a change in cell activity [goid 1601] [evidence IEA]; Combining with pancreatic polypeptide PP to initiate a change in cell activity [goid 1602] [evidence ISS]; Combining with pancreatic polypeptide PP to initiate a change in cell activity [goid 1602] [evidence IDA]; Combining with pancreatic polypeptide PP to initiate a change in cell activity [goid 1602] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with neuropeptide Y to initiate a change in cell activity [goid 4983] [evidence ISS]; Combining with neuropeptide Y to initiate a change in cell activity [goid 4983] [evidence IDA]	NPYR5	NPYR5
Oxidoreductase -> Oxygenase	Lipid, fatty acid and steroid metabolism -> Fatty acid metabolism;Lipid, fatty acid and steroid metabolism -> Steroid metabolism;Electron transport	Rattus norvegicus	RefSeq	GI_31542441-S	ILMN_283237	CYP1A2	NM_012541.2	NM_012541.2		24297	31542441	NM_012541.2	Cyp1a2	NP_036673.2	ILMN_1350207	2320300	S	1469	CGTGAAGGTGGACCTGACACCCAGCTATGGGCTGACCATGAAGCCCAGAA				8q24	"Rattus norvegicus cytochrome P450, family 1, subfamily a, polypeptide 2 (Cyp1a2), mRNA."	"The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"	"The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells [goid 6725] [evidence ISS]; The chemical reactions and pathways involving any member of a large group of derivatives or analogs of porphyrin. Porphyrins consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group [goid 6778] [evidence ISS]; The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide [goid 6805] [evidence TAS]; The chemical reactions and pathways involving a toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism [goid 9404] [evidence ISS]; The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development [goid 9791] [evidence ISS]; Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10468] [evidence ISS]; The chemical reactions and pathways involving a drug, a substance used in the diagnosis, treatment or prevention of a disease; as used here antibiotic substances (see antibiotic metabolism) are considered to be drugs, even if not used in medical or veterinary practice [goid 17144] [evidence ISS]; The chemical reactions and pathways involving dibenzo-p-dioxin, a substance composed of two benzene rings linked by two ether bonds. Dibenzo-p-dioxins are generated as by-products in the manufacturing of herbicides, insecticides, fungicides, paper pulp bleaching, and in incineration, and can accumulate in milk and throughout the food chain, creating significant health concern [goid 18894] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which either requires oxygen (aerobic respiration) or does not (anaerobic respiration) [goid 45333] [evidence ISS]; The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA [goid 50665] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]"	"Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water [goid 4497] [evidence IDA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system [goid 9055] [evidence IEA]; Interacting selectively with oxygen (O2) [goid 19825] [evidence ISS]; Interacting selectively with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring [goid 20037] [evidence IEA]; Catalysis of the removal of a methyl group from a substrate [goid 32451] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence ISS]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence ISS]; Catalysis of the reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [goid 50381] [evidence IEA]"	RATCYPD45; P-450d; CYPD45	RATCYPD45; P-450d; CYPD45
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_62648753-S	ILMN_264441	RGD1562265_PREDICTED	XM_001062203.1	XM_001062203.1		313283	109476257	XM_001062203.1	RGD1562265_predicted	XP_001062203.1	ILMN_1367175	730128	S	11	CACTGCCATGGCTGAGGGAGACATAGCTGCTGGAGGTGTAATAGACATCA				5q21	"PREDICTED: Rattus norvegicus similar to ribosomal protein S12 (predicted) (RGD1562265_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_34869565-S	ILMN_270853	LOC498468	XM_573725.1	XM_573725.1		498468	62661177	XM_573725.1	LOC498468	XP_573725.2	ILMN_1369864	2100309	S	807	TCAGGTCTGAACACTCCAGCAGACGCTTGCCCGTGGCCCAGAGCAGGACT	15	+	19673750-19673753:19677966-19678011	15p14	"PREDICTED: Rattus norvegicus similar to Spetex-2C protein (LOC498468), mRNA."
		Rattus norvegicus	RefSeq	GI_62662545-S	ILMN_57517	LOC502071	XM_577503.1	XM_577503.1		502071	62662545	XM_577503.1	LOC502071	XP_577503.1	ILMN_1361405	3190333	S	480	AAAGACTCAGTTACCTCGTTGTCTGAAGCCAGAATCCTGCAGCTGAGAAG					"PREDICTED: Rattus norvegicus similar to protease (LOC502071), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62718233-S	ILMN_274515	LOC689362	XM_001070518.1	XM_001070518.1		689362	109513332	XM_001070518.1	LOC689362	XP_001070518.1	ILMN_1360775	4200673	S	409	CTCCTGATGGAGAACACATGTAGGAAGAAGTTGGTCCCACTGAAACAGGG	Un|NW_047878.1	-	379262-379311		"PREDICTED: Rattus norvegicus similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) (LOC689362), mRNA."
Nucleic acid binding -> Other DNA-binding protein;Transferase -> Methyltransferase	Nucleoside, nucleotide and nucleic acid metabolism -> Chromatin packaging and remodeling	Rattus norvegicus	RefSeq	GI_62663907-S	ILMN_267758	SUV39H2_PREDICTED	XM_001066854.1	XM_001066854.1		364785	109506089	XM_001066854.1	Suv39h2_predicted	XP_001066854.1	ILMN_1353330	4150398	S	1216	GTGAAGAGGCTGAGAGACGGGGACAGCTCTATGACAACAAAGGGATCACC				17q12.3	"PREDICTED: Rattus norvegicus suppressor of variegation 3-9 homolog 2 (Drosophila) (predicted) (Suv39h2_predicted), mRNA."
Nucleic acid binding -> mRNA processing factor -> mRNA splicing factor	Nucleoside, nucleotide and nucleic acid metabolism -> Pre-mRNA processing -> mRNA splicing	Rattus norvegicus	RefSeq	GI_62649296-S	ILMN_67582	LOC362551	XM_342871.2	XM_342871.2		362551	62649296	XM_342871.2	LOC362551	XP_342872.2	ILMN_1363167	2450403	S	2683	GATTGGTTGAGGGAGGGCAGGACACACTTGTGCTATGGTGTGCAGTTGGC				5q33	"PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ10770 (predicted) (LOC362551), mRNA."
		Rattus norvegicus	RefSeq	GI_62718500-S	ILMN_64804	LOC503360	XM_578899.1	XM_578899.1		503360	62718500	XM_578899.1	LOC503360	XP_578899.1	ILMN_1373889	50025	S	338	TGAGCCGATGACTGAACACAGGCTTTGGGGCCGAGATACTTCTGTACAGT					"PREDICTED: Rattus norvegicus similar to LRRG00131 (LOC503360), mRNA."
Hydrolase -> Phosphodiesterase	Nucleoside, nucleotide and nucleic acid metabolism -> Metabolism of cyclic nucleotides;Signal transduction	Rattus norvegicus	RefSeq	GI_13540702-S	ILMN_270493	PDE1A	NM_030871.1	NM_030871.1		81529	13540702	NM_030871.1	Pde1a	NP_110498.1	ILMN_1373026	1240193	S	1603	GCAGAACAAGGAGAGGTGGAAAGAGTTGGCTGCCCAAGGCGAACTTGATC	3	-	62650242-62650291	3q24	"Rattus norvegicus phosphodiesterase 1A, calmodulin-dependent (Pde1a), mRNA."		"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]"	"Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate [goid 4114] [evidence IEA]"	3-RACEclone8phosphodiesterase1A; 3'-RACEclone8phosphodiesterase1A	3-RACEclone8phosphodiesterase1A; 3'-RACEclone8phosphodiesterase1A
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation	Rattus norvegicus	RefSeq	GI_62664336-S	ILMN_286096	STK32A_PREDICTED	XM_344677.2	XM_344677.2		364858	62664336	XM_344677.2	Stk32a_predicted	XP_344678.2	ILMN_1367886	4200440	S	1549	GCTTCTGAGTCTTTGGGGGACAGTGCTTGGCACCTGGCGGAAAACTCCTG	18	+	36611252-36611301	18p11	"PREDICTED: Rattus norvegicus serine/threonine kinase 32A (predicted) (Stk32a_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_19424157-S	ILMN_277191	SVS5	NM_133516.1	NM_133516.1		171027	19424157	NM_133516.1	Svs5	NP_598200.1	ILMN_1362112	5550427	S	412	TGAAGACTTGAGCCAATAGGCAGGTTGTCCTCGTTCCCTGGGTGTCACTG	3	+	155265990-155266012:155266567-155266593	3q42	"Rattus norvegicus seminal vesicle secretory protein 5 (Svs5), mRNA."	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]
	Protein metabolism and modification -> Protein modification;Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_27661979-S	ILMN_279575	RGD1564247_PREDICTED	XM_001058612.1	XM_001058612.1		499574	109466361	XM_001058612.1	RGD1564247_predicted	XP_001058612.1	ILMN_1360940	6110020	S	1932	CATGCCTCGAGTGCGGAAGAGGATCTATAAGGAGCTGTGTGAGTGCCGGC				2q24	"PREDICTED: Rattus norvegicus similar to SUMO/sentrin specific protease 5 (predicted) (RGD1564247_predicted), mRNA."
	Protein metabolism and modification -> Protein modification;Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_62658018-S	ILMN_279575	RGD1564247_PREDICTED	XM_001058612.1	XM_001058612.1		499574	109466361	XM_001058612.1	RGD1564247_predicted	XP_001058612.1	ILMN_1355600	1400736	S	1997	CACTCAGCAGGGACTCCAGAAGGCGCCATGTTGGAGCAGATGGTTTGTTA				2q24	"PREDICTED: Rattus norvegicus similar to SUMO/sentrin specific protease 5 (predicted) (RGD1564247_predicted), mRNA."
Molecular function unclassified	Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_62663326-S	ILMN_289805	PHF2_PREDICTED	XM_001056853.1	XM_001056853.1		306814	109505557	XM_001056853.1	Phf2_predicted	XP_001056853.1	ILMN_1355601	6100400	S	3209	GGCGGCCTTCTGCATCATCCCCCAACAACACTGCTGCCAAAGGAAAACGT				17p14	"PREDICTED: Rattus norvegicus PHD finger protein 2 (predicted) (Phf2_predicted), mRNA."
Molecular function unclassified	Immunity and defense -> Stress response	Rattus norvegicus	RefSeq	GI_40254729-S	ILMN_267217	STIP1	NM_138911.2	NM_138911.2		192277	40254729	NM_138911.2	Stip1	NP_620266.1	ILMN_1362703	3990487	S	1806	TACATGCCTACAAGGAAGACAGACTCATCCAGTGCCACCTCGGGCCCTCC	1	-	209693663-209693712	1q43	"Rattus norvegicus stress-induced phosphoprotein 1 (Stip1), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"		"The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]"
Oxidoreductase -> Other oxidoreductase	Electron transport;Sulfur metabolism -> Sulfur redox metabolism;Signal transduction -> Intracellular signaling cascade -> Other intracellular signaling cascade;Immunity and defense -> Stress response;Apoptosis;Cell proliferation and differentiation	Rattus norvegicus	RefSeq	GI_51854244-S	ILMN_278509	TXNDC8	NM_001004092.1	NM_001004092.1		362525	51854244	NM_001004092.1	Txndc8	NP_001004092.1	ILMN_1364346	7100722	S	235	GCATCCAAGTAGTGCCCACATTCCAGATGTTCAAGCACTCCCGAAAGGTC	5	-	75961024-75961031:75980764-75980805	5q24	"Rattus norvegicus thioredoxin domain containing 8 (Txndc8), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]"	"The formation of the acrosome from the spermatid Golgi [goid 1675] [evidence IPI]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]"		Sptrx3	Sptrx3
Nucleic acid binding -> Other RNA-binding protein	Nucleoside, nucleotide and nucleic acid metabolism	Rattus norvegicus	RefSeq	GI_62079172-S	ILMN_274490	ANKZF1	NM_001014219.1	NM_001014219.1		363255	62079172	NM_001014219.1	Ankzf1	NP_001014241.1	ILMN_1353060	5130040	S	2560	TGGAAGATGGGCAGTGAAGGACACTCAGGAACTGGGGCAAAGACAGGGCC	9	+	74481328-74481377	9q33	"Rattus norvegicus ankyrin repeat and zinc finger domain containing 1 (Ankzf1), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]"		Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_16930812-S	ILMN_290054	AKAP12	NM_001033653.1	NM_001033653.1		83425	75905810	NM_001033653.1	Akap12	NP_001028825.1	ILMN_1370981	460239	S	4826	AACCAAAGAATCCCCAGACACCAACGGACCAAAGCTAACCGAGGAGGGCG	1	+	35065966-35066015	1p11	"Rattus norvegicus A kinase (PRKA) anchor protein 12 (Akap12), transcript variant 2, mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]"	"The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif [goid 6605] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	AKAP12B; AKAP12G; AKAP12A	AKAP12B; AKAP12G; AKAP12A
		Rattus norvegicus	RefSeq	GI_62666296-S	ILMN_67621	LOC499472	XM_579969.1	XM_579969.1		499472	62666296	XM_579969.1	LOC499472	XP_579969.1	ILMN_1375192	2680014	S	1705	ACTGTCAAGATGGCAGCAGCGGGAGCAAGGAGGTGATGAACGTGCTGGTC					"PREDICTED: Rattus norvegicus LOC499472 (LOC499472), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62649949-S	ILMN_55650	ARHGEF19_PREDICTED	XM_342965.3	XM_342965.3		362648	109475748	XM_342965.3	Arhgef19_predicted	XP_342966.3	ILMN_1352810	4060152	S	2931	CAGTCCTACTGTGTGTCCTCTGTCTGCCCGGGACTGTGAGCCTATGGCTT	5	+	160109777-160109826	5q36	"PREDICTED: Rattus norvegicus Rho guanine nucleotide exchange factor (GEF) 19 (predicted) (Arhgef19_predicted), mRNA."
Protease -> Cysteine protease	Protein metabolism and modification -> Proteolysis;Apoptosis	Rattus norvegicus	RefSeq	GI_48976078-S	ILMN_269468	CASP7	NM_022260.2	NM_022260.2		64026	48976078	NM_022260.2	Casp7	NP_071596.1	ILMN_1363486	4610528	S	1951	CTGACTTGCCCGATCATCCACACAGGTGCTGAAGAGTAACCCATCCCACG	1	+	262721297-262721346	1q55	"Rattus norvegicus caspase 7 (Casp7), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]"	"The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence ISS]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence TAS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers [goid 9411] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers [goid 9411] [evidence IEA]"	"Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 4197] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile [goid 8234] [evidence IDA]"
Hydrolase -> Esterase	Lipid, fatty acid and steroid metabolism -> Phospholipid metabolism;Neuronal activities -> Other neuronal activity	Rattus norvegicus	RefSeq	GI_62658321-S	ILMN_64912	RGD1564611_PREDICTED	XM_341025.3	XM_341025.3		360753	109494954	XM_341025.3	RGD1564611_predicted	XP_341026.3	ILMN_1359119	3710072	S	4119	CTCAGAGGTGGAAGAGGAGAAGTCCACACTCCGGCAACGACGCTTTCTGC	12	-	2610817-2610857:2611620-2611628	12p12	"PREDICTED: Rattus norvegicus similar to neuropathy target esterase homolog (predicted) (RGD1564611_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62717730-S	ILMN_67665	LOC367357	XM_346104.2	XM_346104.2		367357	62717730	XM_346104.2	LOC367357	XP_346105.2	ILMN_1372124	4120450	S	236	TGCCAACACTTGGGTGCCTGAGAGGATCCTCAAACCAAAGGCAGACGAGG					"PREDICTED: Rattus norvegicus similar to Y-linked testis-specific protein (LOC367357), mRNA."
Receptor;Hydrolase -> Glycosidase	Carbohydrate metabolism -> Other polysaccharide metabolism;Cell adhesion	Rattus norvegicus	RefSeq	GI_62646919-S	ILMN_291124	HYAL6	NM_001024320.1	NM_001024320.1		500051	66730281	NM_001024320.1	Hyal6	NP_001019491.1	ILMN_1374072	6520671	S	2192	GTGAGAGTTTGTCTGGGGGGCATGGTTGGGGGGATAAGGAACTAGAAACA	4	+	51224775-51224824	4q22	"Rattus norvegicus hyaluronoglucosaminidase 6 (Hyal6), mRNA."		"The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]"	"Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of the random hydrolysis of 1,4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate [goid 4415] [evidence IEA]"
Nucleic acid binding -> Double-stranded DNA binding protein	Developmental processes -> Mesoderm development -> Muscle development	Rattus norvegicus	RefSeq	GI_62667401-S	ILMN_60482	LOC302492	XM_228685.3	XM_228685.3		302492	62667401	XM_228685.3	LOC302492	XP_228685.3	ILMN_1363773	6450411	S	2164	GCCCTCACTTCTGAGTGGACACAAAATCTGTTCGTGTGTAGGATTTCACC				Xq36	"PREDICTED: Rattus norvegicus similar to mCHCR (LOC302492), mRNA."
Transcription factor -> Basic helix-loop-helix transcription factor;Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Developmental processes -> Ectoderm development -> Neurogenesis	Rattus norvegicus	RefSeq	GI_62666339-S	ILMN_69633	SIM1_PREDICTED	XM_228329.4	XM_228329.4		309888	109509665	XM_228329.4	Sim1_predicted	XP_228329.3	ILMN_1349911	4730494	S	2266	CATCTAAGGATGCAGCCGGACCCAGCGCAAGGACACAAGGGAACATCTGT	20	+	54983084-54983133	20q13	"PREDICTED: Rattus norvegicus single-minded 1 (predicted) (Sim1_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47577448-S	ILMN_279778	OLR468	NM_001001124.1	NM_001001124.1		406045	47577448	NM_001001124.1	Olr468	NP_001001124.1	ILMN_1359859	110411	S	398	CGAGCAAAATGTCCAGAAGCGTCTGCCGCTCTCTTGTAGCTGCACCATAC	3	+	69165911-69165960	3q24	"Rattus norvegicus olfactory receptor 468 (Olr468), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr468	Olr468
Phosphatase -> Nucleotide phosphatase	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62656454-S	ILMN_67344	LOC287403	XM_220624.2	XM_220624.2		287403	62656454	XM_220624.2	LOC287403	XP_220624.2	ILMN_1370560	5690008	S	907	CGTACACTCTCAGCCCACAGGTCTTCAGCACCAAGCCATCCGCTAGAGAT				10q24	"PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC287403), mRNA."
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_62666699-S	ILMN_67622	RGD1562962_PREDICTED	XM_235716.3	XM_235716.3		300275	109510575	XM_235716.3	RGD1562962_predicted	XP_235716.1	ILMN_1368955	3520075	S	600	CCTCCAGGCTCTGTACATCAAGAGCCCCAGAGTCTGTATTAGGATGCTCC	X	-	37351843-37351892	Xq14	"PREDICTED: Rattus norvegicus similar to ribosomal protein L10a (predicted) (RGD1562962_predicted), mRNA."
Transferase -> Other transferase	Immunity and defense -> Detoxification	Rattus norvegicus	RefSeq	GI_62654779-S	ILMN_51938	RGD1562107_PREDICTED	XM_343545.3	XM_343545.3		363205	109485876	XM_343545.3	RGD1562107_predicted	XP_343546.2	ILMN_1353147	6130372	S	507	ATGCCACGCCAGTGTTCTCTCGGGCTTCCCTCTGCTACAGGACTTCAAGG	9	+	19976085-19976124:19977950-19977959	9q13	"PREDICTED: Rattus norvegicus similar to class-alpha glutathione S-transferase (predicted) (RGD1562107_predicted), mRNA."
Kinase -> Nucleotide kinase	Nucleoside, nucleotide and nucleic acid metabolism -> Pyrimidine metabolism	Rattus norvegicus	RefSeq	GI_62664781-S	ILMN_61468	TK2_PREDICTED	XM_226211.4	XM_226211.4		291824	109507710	XM_226211.4	Tk2_predicted	XP_226211.4	ILMN_1374400	2810408	S	669	CCACCTCTACGAGGAGTGGCTGGTCACTGGTAGCCTTTTCCCAGCTGCAG	19	+	686941-686990	19p14	"PREDICTED: Rattus norvegicus thymidine kinase 2, mitochondrial (predicted) (Tk2_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_25742673-S	ILMN_297679	ATXN10	NM_133313.1	NM_133313.1		170821	25742673	NM_133313.1	Atxn10	NP_579847.1	ILMN_1370090	380504	S	1645	CCATCTCACGGCCCTCTCGTCTCTGCGGTGTATGAACTCAGAAGTATCGG	7	+	123461512-123461561	7q34	"Rattus norvegicus ataxin 10 (Atxn10), mRNA."	"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IDA]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence ISS]; A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell [goid 30425] [evidence IEA]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence ISS]; The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections [goid 43025] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]"	"The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IDA]	Sca10	Sca10
Miscellaneous function -> Structural protein	Developmental processes -> Gametogenesis;Oncogenesis -> Tumor suppressor;Cell structure and motility -> Cell structure;Cell structure and motility -> Cell motility	Rattus norvegicus	RefSeq	GI_62666468-S	ILMN_267314	RGD1566387_PREDICTED	XM_001061708.1	XM_001061708.1		298326	109512486	XM_001061708.1	RGD1566387_predicted	XP_001061708.1	ILMN_1360669	6130025	S	1308	GCAGAACAAGAGCACCAAGCAGTATGGAGTTATAGCGGTCTACAGTGGCC				Xq12	"PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1566387_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62663331-S	ILMN_290766	RGD1562097_PREDICTED	XM_001057602.1	XM_001057602.1		498718	109505569	XM_001057602.1	RGD1562097_predicted	XP_001057602.1	ILMN_1358435	7050546	S	321	CAGACTGCGAAACCATGAAGGAGAGACGACAGGAATGCCAGAGCCTGAAC				17p14	"PREDICTED: Rattus norvegicus RGD1562097 (predicted) (RGD1562097_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_27683834-S	ILMN_280440	RGD1307694_PREDICTED	XR_008611.1	XR_008611.1		301425	109487208	XR_008611.1	RGD1307694_predicted		ILMN_2039985	1500255	S	1603	CCCACAATCAGGCGAAACACTGTGCACGACCATACACTGCTCCAGAGCCC				9q31	"PREDICTED: Rattus norvegicus similar to dentin sialophosphoprotein; dentin phosphophoryn; dentinogenesis imperfecta 1 (predicted) (RGD1307694_predicted), mRNA."
Extracellular matrix -> Extracellular matrix linker protein	Signal transduction -> Cell communication -> Cell adhesion-mediated signaling;Signal transduction -> Cell communication -> Extracellular matrix protein-mediated signaling;Cell adhesion	Rattus norvegicus	RefSeq	GI_62659494-S	ILMN_50640	LAMC2	XM_213902.4	XM_213902.4		192362	109498027	XM_213902.4	Lamc2	XP_213902.4	ILMN_1368403	60520	S	5003	GACGGTTGCATCATGGGAATACCAGTGGGAATTGCTGGAGGAACGGAGGC	13	-	68151174-68151223	13q21	"PREDICTED: Rattus norvegicus lamimin, gamma 2 (Lamc2), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IDA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IDA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IDA]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IEA]; A laminin complex composed of alpha4, beta1 and gamma1 polypeptide chains [goid 5607] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins [goid 5938] [evidence IDA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IEA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]; A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants) [goid 31012] [evidence IEA]"	"The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]"	"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IDA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]"
Cytoskeletal protein -> Actin family cytoskeletal protein -> Non-motor actin binding protein	Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_9507134-S	ILMN_265407	SPTBN2	NM_019167.1	NM_019167.1		29211	9507134	NM_019167.1	Sptbn2	NP_062040.1	ILMN_1366935	5080601	S	7921	GTGTGCCACCCACCATGCAGTTCTTTGCCTCTGGGATCAGCCAGGACCCT	1	+	207358639-207358688	1q42	"Rattus norvegicus spectrin, beta, non-erythrocytic 2 (Sptbn2), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence TAS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Membrane associated dimeric protein (240 and 220 kDa) of erythrocytes. Forms a complex with ankyrin, actin and probably other components of the membrane cytoskeleton, so that there is a mesh of proteins underlying the plasma membrane, potentially restricting the lateral mobility of integral proteins [goid 8091] [evidence ISS]; Membrane associated dimeric protein (240 and 220 kDa) of erythrocytes. Forms a complex with ankyrin, actin and probably other components of the membrane cytoskeleton, so that there is a mesh of proteins underlying the plasma membrane, potentially restricting the lateral mobility of integral proteins [goid 8091] [evidence TAS]; The dense fibrillar network lying on the inner side of the nuclear membrane [goid 16363] [evidence TAS]"	"The initial attachment of a synaptic vesicle membrane to the presynaptic membrane, mediated by proteins protruding from the membrane of the synaptic vesicle and the target membrane [goid 16081] [evidence TAS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence ISS]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; Any process that modulates the frequency, rate or extent of calcium ion-dependent exocytosis [goid 17158] [evidence TAS]; The binding of a protein or protein complex to the barbed (or plus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits [goid 51016] [evidence IEA]"	"Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence TAS]"	Sptbn2	Sptbn2
		Rattus norvegicus	RefSeq	GI_62643380-S	ILMN_67925	RGD1310132	XM_342238.3	XM_342238.3		361939	109464796	XM_342238.3	RGD1310132	XP_342239.3	ILMN_1369441	130136	S	1887	CCCACGATGGGCAGTCAGCCTTGTGTGTGGAATAGTAGCGTTCACCATCT	2	-	127782938-127782987	2q26	"PREDICTED: Rattus norvegicus similar to 2810423E13Rik protein (RGD1310132), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62664710-S	ILMN_57070	RGD1559694_PREDICTED	XM_574179.2	XM_574179.2		498891	109506859	XM_574179.2	RGD1559694_predicted	XP_574179.1	ILMN_1350515	6180372	S	971	CGACTGTTTCTCCAAGTGTGATCTGCGAGTGAACAAGTGTGGAGCCCGGC	18	+	81307524-81307573	18q12.3	"PREDICTED: Rattus norvegicus similar to hypothetical protein B230399E16 (predicted) (RGD1559694_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62647608-S	ILMN_51628	LOC502845	XM_578345.1	XM_578345.1		502845	62647608	XM_578345.1	LOC502845	XP_578345.1	ILMN_1370308	4850121	S	71	GTGTGGCCTGCAGAGTTTGTTACCTGCCCGTGAGACGATTGAGATTGAGG				4q32	"PREDICTED: Rattus norvegicus similar to SPCS2 protein (LOC502845), mRNA."
Transcription factor -> Transcription cofactor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription	Rattus norvegicus	RefSeq	GI_34858200-S	ILMN_274033	RGD1563667_PREDICTED	XM_001053995.1	XM_001053995.1		365855	109514619	XM_001053995.1	RGD1563667_predicted	XP_001053995.1	ILMN_1367989	4120369	S	995	TGAAGTCTCTGATACCGTGGGGTGGAAGTCAATGGTGGAGTCACATCCCC				2q34	"PREDICTED: Rattus norvegicus similar to TDPOZ3 (predicted) (RGD1563667_predicted), mRNA."
Transcription factor -> Transcription cofactor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription	Rattus norvegicus	RefSeq	GI_62643853-S	ILMN_274033	RGD1563667_PREDICTED	XM_001053995.1	XM_001053995.1		365855	109514619	XM_001053995.1	RGD1563667_predicted	XP_001053995.1	ILMN_1361233	6940019	S	544	CAAGGCAGATGTTGGTCAACGACATAGGAGAGCTGTGGGAAAATTCCCTC				2q34	"PREDICTED: Rattus norvegicus similar to TDPOZ3 (predicted) (RGD1563667_predicted), mRNA."
Transferase -> Other transferase	Lipid, fatty acid and steroid metabolism -> Lipid metabolism	Rattus norvegicus	RefSeq	GI_62646162-S	ILMN_278135	RGD1310030_PREDICTED	XM_001081310.1	XM_001081310.1		296188	109470890	XM_001081310.1	RGD1310030_predicted	XP_001081310.1	ILMN_1365574	5550129	S	1483	CTGCCAGAAGGTCGGGCTAGGTTCAGCCTTTCCTCAGCTCATACTCGGGA				3q36	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA C130053K05 gene; similar to dJ718P11.1.1 (novel class II aminotransferase similar to serine palmotyltransferase (isoform 1)) (predicted) (RGD1310030_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62718129-S	ILMN_67146	LOC301986	XM_217515.3	XM_217515.3		301986	62718129	XM_217515.3	LOC301986	XP_217515.3	ILMN_1357912	840204	S	538	CTGAGGAGGCAGCACCCACAGAATCAGGCCATGAGGAAAAGGAGAGGCTG					"PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC301986), mRNA."
Nucleic acid binding -> mRNA processing factor -> mRNA splicing factor;Nucleic acid binding -> Ribonucleoprotein	Nucleoside, nucleotide and nucleic acid metabolism -> Pre-mRNA processing -> mRNA splicing	Rattus norvegicus	RefSeq	GI_62662415-S	ILMN_270858	LSM4_PREDICTED	XM_001067054.1	XM_001067054.1		290647	109503942	XM_001067054.1	Lsm4_predicted	XP_001067054.1	ILMN_1360845	2450600	S	542	GCGCCTTTGCGTGAAGCCCCACTTGGCGTCTGATCCAGTGAAATCCCTGA				16p14	"PREDICTED: Rattus norvegicus LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) (predicted) (Lsm4_predicted), mRNA."
Protease -> Metalloprotease	Protein metabolism and modification -> Proteolysis;Signal transduction -> Cell communication -> Cell adhesion-mediated signaling	Rattus norvegicus	RefSeq	GI_27670054-S	ILMN_269768	RGD1562912_PREDICTED	XM_224829.1	XM_224829.1		290726	27670054	XM_224829.1	RGD1562912_predicted	XP_224829.1	ILMN_1369574	3780176	S	1960	TGCAACGAACATTGGGCCCCACCCAACTGCCTGAACAAGGGCTTTGGAGG	16	+	39656578-39656627	16p11	"PREDICTED: Rattus norvegicus similar to testase-9 (predicted) (RGD1562912_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_55742810-S	ILMN_300754	WDR46	NM_212491.2	NM_212491.2		309628	55742810	NM_212491.2	Wdr46	NP_997656.1	ILMN_1371292	520471	S	1913	GGGGCCAGAATGCTCAGTGGGCAAGGCTAAACCTGATGCCAAACCTGAGT	20	-	5089899-5089948	20p12	"Rattus norvegicus WD repeat domain 46 (Wdr46), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis [goid 6418] [evidence IEA]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of pyrophosphate and AMP [goid 4812] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]"	MGC94931; Bing4	MGC94931; Bing4
		Rattus norvegicus	RefSeq	GI_62648627-S	ILMN_55760	LOC500407	XM_575770.1	XM_575770.1		500407	62648627	XM_575770.1	LOC500407	XP_575770.1	ILMN_1372911	4480309	S	186	GGGTCTCTGTTCCTACCTGGCATCACTGCTCAGGGTCACACGAGGGAAAA					"PREDICTED: Rattus norvegicus similar to High mobility group protein 1 (HMG-1) (Amphoterin) (Heparin-binding protein p30) (LOC500407), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Immunity and defense -> Stress response;Sensory perception -> Other sensory perception	Rattus norvegicus	RefSeq	GI_19173777-S	ILMN_277818	CYSLTR2	NM_133413.1	NM_133413.1		170926	19173777	NM_133413.1	Cysltr2	NP_596904.1	ILMN_1366032	2650403	S	572	GGGTGGGCTTCTTGCTTCCATTTTTCATACTCACCATCTGCTACCTGTTG	15	-	53647808-53647857	15p11	"Rattus norvegicus cysteinyl leukotriene receptor 2 (Cysltr2), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]"	Combining with a cysteinyl leukotriene to initiate a change in cell activity. Cysteinyl leukotrienes are leukotrienes that contain a peptide moiety based on cysteine [goid 1631] [evidence ISS]; Combining with a cysteinyl leukotriene to initiate a change in cell activity. Cysteinyl leukotrienes are leukotrienes that contain a peptide moiety based on cysteine [goid 1631] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Cyslt2	Cyslt2
Protease -> Serine protease	Protein metabolism and modification -> Proteolysis;Signal transduction -> Cell surface receptor mediated signal transduction -> Receptor protein serine/threonine kinase signaling pathway;Developmental processes -> Mesoderm development	Rattus norvegicus	RefSeq	GI_62641924-S	ILMN_65402	PCSK5	XM_342032.3	XM_342032.3		116548	109459948	XM_342032.3	Pcsk5	XP_342033.3	ILMN_1356195	2470397	S	6437	TGGAGAAGACCGTAAGGATTCTGCTTTCAAACTGTACTTGGAGACCCCCC	1	-	220962255-220962304	1q43	"PREDICTED: Rattus norvegicus proprotein convertase subtilisin/kexin type 5 (Pcsk5), mRNA."	"That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The volume enclosed by the membranes of any cisterna or subcompartment of the Golgi apparatus, including the cis- and trans-Golgi networks [goid 5796] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules [goid 30141] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence ISS]; The regulated release of renin into the blood stream by juxtoglomerular cells [goid 2001] [evidence ISS]; The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell [goid 6465] [evidence IEA]; The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell [goid 6465] [evidence ISS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; Attachment of the blastocyst to the uterine lining [goid 7566] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence ISS]; The generation of a mature peptide hormone by posttranslational processing of a prohormone [goid 16486] [evidence ISS]; Any process involved in the assembly, maturation, egress, and release of progeny virions [goid 19067] [evidence ISS]; The process whose specific outcome is the progression of the respiratory tube over time, from its formation to the mature structure. The respiratory tube is assumed to mean any tube in the respiratory tract [goid 30323] [evidence ISS]; The generation of a mature nerve growth factor by proteolysis of a precursor [goid 32455] [evidence ISS]; The process by which the anatomical structures of limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin [goid 35108] [evidence ISS]; The chemical reactions and pathways resulting in the formation of cytokines, any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity [goid 42089] [evidence ISS]; The chemical reactions and pathways resulting in the formation of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. This may include the translation of a precursor protein and its subsequent processing into a functional peptide [goid 43043] [evidence ISS]; The process whose specific outcome is the progression of the gut over time, from its formation to the mature structure during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48566] [evidence ISS]; The process whose specific outcome is the progression of the gut over time, from its formation to the mature structure during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48566] [evidence ISS]; The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure [goid 48706] [evidence ISS]; The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure [goid 48706] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein during protein maturation, the process leading to the attainment of the full functional capacity of a protein [goid 51605] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein during protein maturation, the process leading to the attainment of the full functional capacity of a protein [goid 51605] [evidence ISS]; The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell [goid 6465] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]"	"Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds [goid 42277] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]"
		Rattus norvegicus	RefSeq	GI_34854991-S	ILMN_57569	LOC365710	XM_345174.1	XM_345174.1		365710	34854991	XM_345174.1	LOC365710	XP_345175.1	ILMN_1361289	4780253	S	206	TAAGGCGGCCTCAGCTGTGAACAATGCAGCTCAGGACCTATGCCGCAAAG				2q21	"PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L35 (LOC365710), mRNA."
Hydrolase	Immunity and defense -> Detoxification;Other metabolism	Rattus norvegicus	RefSeq	GI_62652829-S	ILMN_278009	RGD1563386_PREDICTED	XM_001077714.1	XM_001077714.1		500911	109482643	XM_001077714.1	RGD1563386_predicted	XP_001077714.1	ILMN_1365438	2810253	S	356	TCAGCTTTTAAGTGGACTCGGCTCTCCCTCCTGGGCCACAGTTTTGGTGG				7q34	"PREDICTED: Rattus norvegicus similar to serine hydolase like protein, isoforms Serhl-2 (predicted) (RGD1563386_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62660467-S	ILMN_266673	WDR19_PREDICTED	XM_223412.3	XM_223412.3		305349	62660467	XM_223412.3	Wdr19_predicted	XP_223412.3	ILMN_1355959	4070102	S	3875	CGCAACAGGCCGACACATGCTGAAAGACGATTGGACAATGTGCCCACACT	14	-	45744852-45744895:45747859-45747864	14p11	"PREDICTED: Rattus norvegicus WD repeat domain 19 (predicted) (Wdr19_predicted), mRNA."
Cell adhesion molecule -> Other cell adhesion molecule	Cell adhesion;Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_56090308-S	ILMN_285269	MPZL1	NM_001007728.1	NM_001007728.1		360871	56090308	NM_001007728.1	Mpzl1	NP_001007729.1	ILMN_1372608	3610242	S	1940	AGGACAGCGTGCAAACCTCAGGGTCTAACTCCACACCCCACCTCCTTGGA	13	-	81321433-81321482	13q23	"Rattus norvegicus myelin protein zero-like 1 (Mpzl1), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"			MGC93692	MGC93692
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47577696-S	ILMN_291696	OLR577	NM_001000567.1	NM_001000567.1		366108	47577696	NM_001000567.1	Olr577	NP_001000567.1	ILMN_1351929	3120440	S	312	CGGGGCCTTTGCAGATGTTGAATGCCTCATGCTAGCTGTGATGGCCTATG	3	-	71353597-71353646	3q24	"Rattus norvegicus olfactory receptor 577 (Olr577), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr577	Olr577
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62645876-S	ILMN_272322	RGD1563839_PREDICTED	XM_001081175.1	XM_001081175.1		366192	109470829	XM_001081175.1	RGD1563839_predicted	XP_001081175.1	ILMN_1374709	6040292	S	2533	CTCCATGAGAAAGTGTTCACCTCTGCTCTCTGAAGGGCACTCATGGGCAT				3q36	"PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ13149 (predicted) (RGD1563839_predicted), mRNA."
Membrane traffic protein -> Membrane traffic regulatory protein	Intracellular protein traffic -> Exocytosis -> Regulated exocytosis;Neuronal activities -> Synaptic transmission -> Neurotransmitter release	Rattus norvegicus	RefSeq	GI_13928963-S	ILMN_281895	SYT4	NM_031693.1	NM_031693.1		64440	13928963	NM_031693.1	Syt4	NP_113881.1	ILMN_1364696	5670546	S	1468	GGTGGGGGGCACTGGAAGGAGATCTGTGACTTCCCCAGGAGACAAATTGC	18	-	23807389-23807438	18p12	"Rattus norvegicus synaptotagmin IV (Syt4), mRNA."	"Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence NAS]; Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane [goid 8021] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IEA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IEA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence ISS]"	"The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence NAS]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence IEA]; The regulated release of neurotransmitter into the synaptic cleft. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin [goid 7269] [evidence ISS]; The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, requiring the presence of calcium ions [goid 17156] [evidence NAS]"	"Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]"
Kinase -> Other kinase	Signal transduction -> Intracellular signaling cascade -> JNK cascade	Rattus norvegicus	RefSeq	GI_16758933-S	ILMN_296792	SH3BP5	NM_054011.1	NM_054011.1		117186	16758933	NM_054011.1	Sh3bp5	NP_446463.2	ILMN_1374910	1240450	S	2030	GGACGGTTTTATAGCCTGCCCGCCAAGGGGCTTTATTCTAAGAGACGTGC	16	-	6823798-6823847	16p16	"Rattus norvegicus SH3-domain binding protein 5 (BTK-associated) (Sh3bp5), mRNA."	"A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]"	"Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase activity [goid 6469] [evidence ISS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence ISS]; A cascade of protein kinase activities, culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases, which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress [goid 7254] [evidence NAS]"	"Stops, prevents or reduces the activity of a protein kinase, an enzyme which phosphorylates a protein [goid 4860] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with JUN kinase, an enzyme that catalyzes the phosphorylation and activation of members of the JUN family [goid 8432] [evidence IPI]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence TAS]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence IEA]"	Sab; Vesp18	Sab; Vesp18
Hydrolase -> Lipase -> Phospholipase;Select calcium binding protein	Lipid, fatty acid and steroid metabolism -> Phospholipid metabolism;Lipid, fatty acid and steroid metabolism -> Lipid metabolism;Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling	Rattus norvegicus	RefSeq	GI_62643510-S	ILMN_267353	PLCL3_PREDICTED	XM_001059231.1	XM_001059231.1		310463	109466692	XM_001059231.1	Plcl3_predicted	XP_001059231.1	ILMN_1362784	360451	S	5866	GGTGGCTCACAACTTTAATCCCAGCAGAGGCAGGTAAGTTCGAGGCTAGC				2q31	"PREDICTED: Rattus norvegicus phospholipase C-like 3 (predicted) (Plcl3_predicted), mRNA."
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation	Rattus norvegicus	RefSeq	GI_62651959-S	ILMN_68298	RGD1565071_PREDICTED	XM_578647.2	XM_578647.2		368175	109480361	XM_578647.2	RGD1565071_predicted	XP_578647.2	ILMN_1353947	3850037	S	1120	GTTGCTCTGACGCTATCAGGACTCAAGATGAGCAGGTGTGTCTCCATGCC	7	-	17791382-17791431	7q12	"PREDICTED: Rattus norvegicus similar to hypothetical protein 4930509O22 (predicted) (RGD1565071_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_34866333	ILMN_56299	LOC366315	XM_345503.1	XM_345503.1		366315	34866333	XM_345503.1	LOC366315	XP_345504.1	ILMN_1650244	2810725	S	2	TGAGCAGTTTGGTCCTGGTGTGTGGGCCGACATCTGTCTCCATGAAGGTC					"PREDICTED: Rattus norvegicus similar to Rpl24 protein (LOC366315), mRNA."
Transferase -> Transaminase	Amino acid metabolism	Rattus norvegicus	RefSeq	GI_8392970-S	ILMN_161861	BCAT1	NM_017253.2	NM_017253.2		29592	56799398	NM_017253.2	Bcat1	NP_058949.1	ILMN_2040300	2570528	S	1133	AGGAGAACAGAGTGAAGGAGATGTTCGGCTCGGGGACAGCCTGCGTTGTC	4	-	182649138-182649187	4q44	"Rattus norvegicus branched chain aminotransferase 1, cytosolic (Bcat1), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]"	"Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine [goid 9081] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine [goid 9083] [evidence ISS]"	"Catalysis of the reaction: a branched-chain amino acid + 2-oxoglutarate = L-glutamate + a 2-oxocarboxylate derived from the branched-chain amino acid. Includes catalysis of the reaction: L-leucine + 2-oxoglutarate = 4-methyl-2-oxopentanoate + L-glutamate and anaologous reactions involving L-isoleucine and L-valine [goid 4084] [evidence TAS]; Catalysis of the reaction: a branched-chain amino acid + 2-oxoglutarate = L-glutamate + a 2-oxocarboxylate derived from the branched-chain amino acid. Includes catalysis of the reaction: L-leucine + 2-oxoglutarate = 4-methyl-2-oxopentanoate + L-glutamate and anaologous reactions involving L-isoleucine and L-valine [goid 4084] [evidence IEA]; Catalysis of the reaction: a branched-chain amino acid + 2-oxoglutarate = L-glutamate + a 2-oxocarboxylate derived from the branched-chain amino acid. Includes catalysis of the reaction: L-leucine + 2-oxoglutarate = 4-methyl-2-oxopentanoate + L-glutamate and anaologous reactions involving L-isoleucine and L-valine [goid 4084] [evidence ISS]; Catalysis of the reaction: a branched-chain amino acid + 2-oxoglutarate = L-glutamate + a 2-oxocarboxylate derived from the branched-chain amino acid. Includes catalysis of the reaction: L-leucine + 2-oxoglutarate = 4-methyl-2-oxopentanoate + L-glutamate and anaologous reactions involving L-isoleucine and L-valine [goid 4084] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IDA]"	Bcatc; MGC105472	Bcatc; MGC105472
Ion channel -> Anion channel	Transport -> Ion transport -> Anion transport	Rattus norvegicus	RefSeq	GI_62652126-S	ILMN_262518	VMD2L3_PREDICTED	XM_001080943.1	XM_001080943.1		314847	109481980	XM_001080943.1	Vmd2l3_predicted	XP_001080943.1	ILMN_1356181	4570672	S	2280	TGTTTCGGGAGTCCAGGCACACCTCCCTAGGAAACTTAGGTCCGGATCCT				7q22	"PREDICTED: Rattus norvegicus vitelliform macular dystrophy 2-like 3 (predicted) (Vmd2l3_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62654892-S	ILMN_57596	LOC503250	XM_578782.1	XM_578782.1		503250	62654892	XM_578782.1	LOC503250	XP_578782.1	ILMN_1353167	4010152	S	120	GACCCTCAACTGGGCTTTGCTCTAGATCTCCCTTCTCAGAGGACATGGAC				9q13	"PREDICTED: Rattus norvegicus similar to WW domain binding protein 11 (LOC503250), mRNA."
Molecular function unclassified	Nucleoside, nucleotide and nucleic acid metabolism -> Pre-mRNA processing -> mRNA polyadenylation	Rattus norvegicus	RefSeq	GI_62641256-S	ILMN_274055	PAIP2_PREDICTED	XM_001079699.1	XM_001079699.1		293469	109462840	XM_001079699.1	Paip2_predicted	XP_001079699.1	ILMN_1357225	6900112	S	1093	ACCGCGTTCTCCCAGTGTTAAGCTTGAGGAAATACAATTGGAGGCTTGCG				1q36	"PREDICTED: Rattus norvegicus polyadenylate-binding protein-interacting protein 2 (predicted) (Paip2_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_34871271-S	ILMN_272693	RGD1559575_PREDICTED	XM_001070154.1	XM_001070154.1		287231	109490606	XM_001070154.1	RGD1559575_predicted	XP_001070154.1	ILMN_1352648	2350064	S	2187	CACCTTGAATCTCTACAGGTCTTACTTTGGCCTGGATGAAGCCTCGCTGG				10q21	"PREDICTED: Rattus norvegicus similar to novel protein (predicted) (RGD1559575_predicted), mRNA."
Transcription factor -> Other transcription factor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Developmental processes	Rattus norvegicus	RefSeq	GI_55926201-S	ILMN_272692	ID2	NM_013060.2	NM_013060.2		25587	55926201	NM_013060.2	Id2	NP_037192.1	ILMN_1349207	6450091	S	897	AGTCTTTGGTCAGAAATGGCCTTTTTGACACGAGCCTACTGAATGCTGTG	6	-	42781256-42781305	6q16	"Rattus norvegicus inhibitor of DNA binding 2 (Id2), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; A cell cycle process that modulates the frequency, rate or extent of the progression through the S phase of the mitotic cell cycle [goid 7090] [evidence IDA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte without a nucleus, as found in mammals [goid 43353] [evidence ISS]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte without a nucleus, as found in mammals [goid 43353] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription [goid 43433] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of macrophage differentiation [goid 45651] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of macrophage differentiation [goid 45651] [evidence IEA]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence IEA]; Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor [goid 30528] [evidence IEA]	MGC105494	MGC105494
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Neuronal activities;Sensory perception -> Vision	Rattus norvegicus	RefSeq	GI_28212215-S	ILMN_265541	TAAR8A	NM_175599.1	NM_175599.1		319104	28212215	NM_175599.1	Taar8a	NP_783189.1	ILMN_1357854	4050273	S	862	GCCAAAACCTTGGGGGTCACTGTGGTGGCATTTATGGTCTCATGGCTACC	1	-	21858014-21858063	1p12	"Rattus norvegicus trace-amine-associated receptor 8a (Taar8a), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	Trar5; Ta11	Trar5; Ta11
Transcription factor -> CREB transcription factor;Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_58865799-A	ILMN_265507	CREB3L3	NM_001012115.1	NM_001012115.1		314638	58865799	NM_001012115.1	Creb3l3	NP_001012115.1	ILMN_1376969	70019	S	1444	CGAGGTGGCTCAGGGTCCGTGTGGTGCAAGATGCTTTGGGGGTGCTATGA	7	+	10114476-10114525	7q11	"Rattus norvegicus cAMP responsive element binding protein 3-like 3 (Creb3l3), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus [goid 6986] [evidence IEA]"	"The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]"	MGC109013	MGC109013
		Rattus norvegicus	RefSeq	GI_62643013-S	ILMN_50083	LOC497752	XM_579360.1	XM_579360.1		497752	62643013	XM_579360.1	LOC497752	XP_579360.1	ILMN_1370256	450128	S	1261	GACTCACATGAACCTCCTGACATCCAGCAAACTGGGCTACCATCCCTACG					"PREDICTED: Rattus norvegicus hypothetical gene supported by NM_012927 (LOC497752), mRNA."
Nucleic acid binding -> Chromatin/chromatin-binding protein	Nucleoside, nucleotide and nucleic acid metabolism -> DNA metabolism -> DNA repair;Developmental processes -> Meiosis;Cell cycle -> Mitosis -> Chromosome segregation	Rattus norvegicus	RefSeq	GI_62652875-S	ILMN_68381	SMC1L2_PREDICTED	XM_217011.4	XM_217011.4		300121	109481116	XM_217011.4	Smc1l2_predicted	XP_217011.3	ILMN_1370383	7050184	S	3676	TCCAGACACTGAAGACCAAGAAGGCAGCAGGAGCCACCGGAAACCCAGAG	7	-	123079195-123079244	7q34	"PREDICTED: Rattus norvegicus SMC (structural maintenace of chromosomes 1)-like 2 (S. cerevisiae) (predicted) (Smc1l2_predicted), mRNA."
Receptor -> Cytokine receptor -> Other cytokine receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> Cytokine and chemokine mediated signaling pathway;Apoptosis -> Induction of apoptosis	Rattus norvegicus	RefSeq	GI_59624976-S	ILMN_51642	FAS	NM_139194.2	NM_139194.2		246097	59624976	NM_139194.2	Fas	NP_631933.2	ILMN_1373348	5050128	S	2370	CCTAAGGAGTCCTCTGGTATTTGACCAGGTCCTGTGCAGTGCCACATTGT	1	+	238274645-238274694	1q52	"Rattus norvegicus Fas (TNF receptor superfamily, member 6) (Fas), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IEP]; The side of the plasma membrane that is opposite to the side that faces the cytoplasm [goid 9897] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]; Cytoplasm situated near, or occurring around, the nucleus [goid 48471] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"	"A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; The appearance of immunoglobulin due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels [goid 2377] [evidence ISS]; A organ system process carried out by any of the organs or tissues of the renal system. The renal system is responsible for fluid volume regulation and detoxification in an organism [goid 3014] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence TAS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEP]; The process of apoptosis in activated T cells [goid 6924] [evidence ISS]; The process of apoptosis in inflammatory cells, any cell participating in the inflammatory response to a foreign substance e.g. neutrophil, macrophage [goid 6925] [evidence ISS]; The process of apoptosis in transformed cells, cells that have undergone changes manifested by escape from control mechanisms, increased growth potential, alterations in the cell surface, karyotypic abnormalities, morphological and biochemical deviations from the norm [goid 6927] [evidence ISS]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence IEP]; The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility [goid 7568] [evidence IEP]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence ISS]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence IMP]; Any process induced by extracellular signals that directly activates any of the steps required for cell death by apoptosis [goid 8624] [evidence ISS];  [goid 8625] [evidence ISS];  [goid 8625] [evidence IEP]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus [goid 10035] [evidence IEP]; The process by which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form [goid 10467] [evidence ISS]; Any process involved with the carrying out of an immune response by a B cell, through, for instance, the production of antibodies or cytokines, or antigen presentation to T cells [goid 19724] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria [goid 32496] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus [goid 34097] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; The type of sexual cycle seen in female mammals, with physiologic changes in the endometrium that recur at regular intervals during the reproductive years [goid 42698] [evidence IEP]; The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 43029] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals [goid 43434] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; The process of elimination of immature T cells in the thymus which react strongly with self-antigens [goid 45060] [evidence ISS]; Any process that modulates the frequency, rate or extent of lymphocyte differentiation [goid 45619] [evidence ISS]; Any process that modulates the frequency, rate or extent of myeloid cell differentiation [goid 45637] [evidence ISS]; The process whose specific outcome is the progression of the spleen over time, from its formation to the mature structure. The spleen is a large vascular lymphatic organ composed of white and red pulp, involved both in hemopoietic and immune system functions [goid 48536] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of B cell activation [goid 50869] [evidence ISS]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 51384] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein stimulus [goid 51789] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]"	"Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence TAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence NAS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]; Combining with tumor necrosis factor, a proinflammatory cytokine produced by monocytes and macrophages, to initiate a change in cell function [goid 5031] [evidence TAS]; Combining with tumor necrosis factor, a proinflammatory cytokine produced by monocytes and macrophages, to initiate a change in cell function [goid 5031] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle [goid 4888] [evidence IEA]"
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576544-S	ILMN_292644	OLR1637	NM_001000503.1	NM_001000503.1		305841	47576544	NM_001000503.1	Olr1637	NP_001000503.1	ILMN_1370786	540097	S	579	CAACACCACGAGACTGGAGGAGGCTGACTTCGTCCTGGCCTTTCTTGTCA	15	-	27051613-27051662	15p14	"Rattus norvegicus olfactory receptor 1637 (Olr1637), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1637	Olr1637
Molecular function unclassified	Intracellular protein traffic	Rattus norvegicus	RefSeq	GI_51948499-S	ILMN_294394	COG6	NM_001004262.1	NM_001004262.1		310411	51948499	NM_001004262.1	Cog6	NP_001004262.1	ILMN_1351803	1660239	S	1883	GCATGCAGCCGTGATGAATCCAGTCAACGCGTACAAAGACCCGGAGAGCA	2	-	142767477-142767526	2q26	"Rattus norvegicus component of oligomeric golgi complex 6 (Cog6), mRNA."	"The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A complex of proteins that, in vitro, stimulates intra-Golgi transport; a 13S complex, about 800 kDa in size and consists of at least five polypeptides. In yeast, this complex is called the Sec34/35 complex and is composed of eight subunits (Sec34p, Sec35p, Dor1p, Cod1p, Cod2p, Cod3p, Cod4p, and Cod5p) [goid 17119] [evidence ISS]"	"The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]"		MGC94990	MGC94990
Nucleic acid binding -> Translation factor -> Translation release factor	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_62658849-S	ILMN_51371	RGD1563482_PREDICTED	XM_573395.2	XM_573395.2		498179	109495866	XM_573395.2	RGD1563482_predicted	XP_573395.1	ILMN_1359027	5270435	S	724	TGGTGGTGTACACCTGCCATCTGAGCACTTGGGAGAGCTAAGACAGGAGG	12	-	33378120-33378169	12q15	"PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ38663 (predicted) (RGD1563482_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62640440-S	ILMN_48770	PEG12_PREDICTED	XM_218737.4	XM_218737.4		308692	109458851	XM_218737.4	Peg12_predicted	XP_218737.4	ILMN_1375050	870333	S	775	AGGAGGGCGCAGCTCAGAAATGGGGACGACCTTCTTGTCTCTGGCAGCTA	1	-	116710241-116710290	1q22	"PREDICTED: Rattus norvegicus paternally expressed 12 (predicted) (Peg12_predicted), mRNA."
Cytoskeletal protein -> Actin family cytoskeletal protein -> Actin binding motor protein	Muscle contraction;Developmental processes -> Mesoderm development -> Muscle development;Cell structure and motility -> Cell structure;Cell structure and motility -> Cell motility	Rattus norvegicus	RefSeq	GI_14192924-S	ILMN_263011	TPM1	NM_001034075.1	NM_001034075.1		24851	78000202	NM_001034075.1	Tpm1	NP_001029247.1	ILMN_1354163	6450056	S	1015	CCTAGGGCCAGGCACAGACCGTGCTTTCTATTGTACAGAGGTGATCCTCC	8	-	71336950-71336999	8q24	"Rattus norvegicus tropomyosin 1, alpha (Tpm1), transcript variant 9, mRNA."	"Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached [goid 30018] [evidence IMP]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]"	"A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence TAS]; Any process that activates or increases the rate of ATP hydrolysis by an ATPase [goid 32781] [evidence IMP]; The binding of a protein or protein complex to the end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits [goid 51693] [evidence IDA]; Muscle contraction of cardiac muscle tissue [goid 60048] [evidence IDA]"	"Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence TAS]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IMP]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 47485] [evidence IDA]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IMP]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence IEA]"	Alpha-tm; Tma2; Tmsa	Alpha-tm; Tma2; Tmsa
		Rattus norvegicus	RefSeq	GI_62657518-S	ILMN_70306	LOC363712	XM_343991.2	XM_343991.2		363712	62657518	XM_343991.2	LOC363712	XP_343992.2	ILMN_1372603	3780576	S	348	GAAGACAGGGAGCACCAGGATCAGGAAGGAGCTGGAGAAAAGGGAGCTGT					"PREDICTED: Rattus norvegicus similar to Tcf2 protein (LOC363712), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47577438-S	ILMN_265842	OLR464	NM_001000296.1	NM_001000296.1		295734	47577438	NM_001000296.1	Olr464	NP_001000296.1	ILMN_1366490	4570687	S	560	ACACACCACCCCTACTCAAACTCTCTTGCTCTGACATCCATACGAATGGC	3	+	69112800-69112849	3q24	"Rattus norvegicus olfactory receptor 464 (Olr464), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr464	Olr464
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62667319-S	ILMN_278943	LOC678928	XM_001053866.1	XM_001053866.1		678928	109469966	XM_001053866.1	LOC678928	XP_001053866.1	ILMN_1350471	2940162	S	216	CTGGCCCAAGCCCCTGCCCTAGCACAAATCAATGGACGAGAAGGTGCTGA					"PREDICTED: Rattus norvegicus similar to Down syndrome critical region homolog 6 (LOC678928), mRNA."
Nucleic acid binding -> mRNA processing factor -> mRNA splicing factor	Nucleoside, nucleotide and nucleic acid metabolism	Rattus norvegicus	RefSeq	GI_58865417-A	ILMN_265511	SF4	NM_001011920.1	NM_001011920.1		290666	58865417	NM_001011920.1	Sf4	NP_001011920.1	ILMN_1376609	70408	S	1826	GACCGGCCAGCTGAACTCTCAAAGGAGGATGATGAGTACGAGGCCTTCCG	16	-	19836282-19836331	16p14	"Rattus norvegicus splicing factor 4 (Sf4), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A ribonucleoprotein complex, containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron [goid 5681] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]"	"The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA [goid 8380] [evidence IEA]"	Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]
Transcription factor -> Zinc finger transcription factor -> KRAB box transcription factor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_62663829-S	ILMN_288325	ZNF187	XM_001060246.1	XM_001060246.1		266792	109505947	XM_001060246.1	Znf187	XP_001060246.1	ILMN_1355448	2650039	S	1220	AGGATGAGCCCCGAGAATGCAAGGAGTGTGGGAAAACCTTTAGTCGGGCC				17q11	"PREDICTED: Rattus norvegicus zinc finger protein 187 (Znf187), mRNA."
Receptor -> Other receptor	Developmental processes -> Gametogenesis -> Oogenesis	Rattus norvegicus	RefSeq	GI_62079136-S	ILMN_276120	CD320	XM_001067944.1	XM_001067944.1		362851	109521717	XM_001067944.1	Cd320	XP_001067944.1	ILMN_1358867	2570309	S	854	GGTCGTCAGACACTCCCTTTGTATGTGGTGAGCTTTGCTGGAAAATCGCC				7q12	"PREDICTED: Rattus norvegicus CD320 antigen (Cd320), mRNA."	"The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]"
Receptor -> Other receptor;Signaling molecule -> Other signaling molecule	Signal transduction -> Cell surface receptor mediated signal transduction -> Other receptor mediated signaling pathway;Developmental processes -> Ectoderm development -> Neurogenesis;Developmental processes -> Mesoderm development -> Angiogenesis;Developmental processes -> Mesoderm development -> Heart development	Rattus norvegicus	RefSeq	GI_55741427-S	ILMN_263047	NRP1	NM_145098.2	NM_145098.2		246331	55741427	NM_145098.2	Nrp1	NP_659566.1	ILMN_1367985	1190021	S	3692	CCAAGATGCTGGCACTAGGCGTTGTTCAGTGGGCTCTTTCGATGGACATG	19	+	58487537-58487586	19q12	"Rattus norvegicus neuropilin 1 (Nrp1), mRNA."	"The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]"	"Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence IEA]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence NAS]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IMP]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence IEA]; The process by which the migration of an axon growth cone is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 7411] [evidence ISS]; The collection of axons into a bundle of rods, known as a fascicle [goid 7413] [evidence IEA]; The collection of axons into a bundle of rods, known as a fascicle [goid 7413] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IEP]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence IEA]; The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 16358] [evidence ISS]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of axon outgrowth [goid 30517] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of axon outgrowth [goid 30517] [evidence ISS]; The series of molecular signals generated as a consequence of vascular endothelial growth factor receptor binding to one of its physiological ligands [goid 48010] [evidence IMP]; The series of molecular signals generated as a consequence of vascular endothelial growth factor receptor binding to one of its physiological ligands [goid 48010] [evidence IEA]; The series of molecular signals generated as a consequence of vascular endothelial growth factor receptor binding to one of its physiological ligands [goid 48010] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of axon extension involved in axon guidance [goid 48843] [evidence ISS]"	Combining with vascular endothelial growth factor to initiate a change in cell activity [goid 5021] [evidence IPI]; Combining with vascular endothelial growth factor to initiate a change in cell activity [goid 5021] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS];  [goid 17154] [evidence IPI];  [goid 17154] [evidence TAS];  [goid 17154] [evidence IEA];  [goid 17154] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]	Nrp	Nrp
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62661960-S	ILMN_276740	SACS_PREDICTED	XM_001063390.1	XM_001063390.1		305940	109502539	XM_001063390.1	Sacs_predicted	XP_001063390.1	ILMN_1350658	6020114	S	14108	TTCCCCAGATCCCCAATGACAGGTTCACGTCTGAGGTCGCCATGAGGGTG				15p12	"PREDICTED: Rattus norvegicus sacsin (predicted) (Sacs_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62645273-S	ILMN_50610	LOC502635	XM_578130.1	XM_578130.1		502635	62645273	XM_578130.1	LOC502635	XP_578130.1	ILMN_1367532	1780600	S	814	TGCAGGGTATGGAGACTTTCAGCCACCGCCAACTGTATCCTGGGGCACTC				3q23	"PREDICTED: Rattus norvegicus similar to HMG-1 (LOC502635), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62656043-S	ILMN_272747	RMND5B	NM_001017473.1	NM_001017473.1		497900	62945301	NM_001017473.1	Rmnd5b	NP_001017473.1	ILMN_1355104	430315	S	853	GCCTTTTGCTCGGCTACACCAGAGAGAGATCCAGGTGATGATGGGCAGTC	10	-	37143665-37143689:37144507-37144531	10q22	"Rattus norvegicus required for meiotic nuclear division 5 homolog B (S. cerevisiae) (Rmnd5b), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62945301	ILMN_272747	RMND5B	NM_001017473.1	NM_001017473.1		497900	62945301	NM_001017473.1	Rmnd5b	NP_001017473.1	ILMN_1530466	4610292	S	1707	TGTAAATAGCCCGTTAGAATGAATGCTGTTTTATAACTTTGAGCAAATAT	10	-	37141510-37141559	10q22	"Rattus norvegicus required for meiotic nuclear division 5 homolog B (S. cerevisiae) (Rmnd5b), mRNA."
		Rattus norvegicus	RefSeq	GI_62651698-S	ILMN_263967	RGD1563634_PREDICTED	XR_009036.1	XR_009036.1		500790	109481534	XR_009036.1	RGD1563634_predicted		ILMN_1372643	2570064	S	2507	GAGGTGGCAGAAACCCTTTGTTCCTGTTCCCGTGGACTTATTCAACCGCG				7q11	"PREDICTED: Rattus norvegicus similar to R31449_3 (predicted) (RGD1563634_predicted), mRNA."
Ion channel;Transporter -> Cation transporter;Hydrolase -> Other hydrolase	Transport -> Ion transport -> Cation transport;Homeostasis -> Calcium ion homeostasis	Rattus norvegicus	RefSeq	GI_62667537-S	ILMN_271987	ATP2B3	XM_001057885.1	XM_001057885.1		29599	109462349	XM_001057885.1	Atp2b3	XP_001057885.1	ILMN_1352628	450162	S	4343	GTTCCACCATGTGTTCACTATTTGGGCTGTGCAATGCGGTAGGGGCTAGC				Xq37	"PREDICTED: Rattus norvegicus ATPase, Ca++ transporting, plasma membrane 3 (Atp2b3), mRNA."	"A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells [goid 6812] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]"	"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate, to directly drive the transport of ions across a membrane. The reaction is characterized by the transient formation of a high-energy aspartyl-phosphoryl-enzyme intermediate [goid 15662] [evidence IEA]; Interacting selectively with a PDZ domain of a protein, a domain found in diverse signaling proteins [goid 30165] [evidence IPI]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans) [goid 5388] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane [goid 16820] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_58865749-A	ILMN_300013	ZC3H8	NM_001012090.1	NM_001012090.1		311414	58865749	NM_001012090.1	Zc3h8	NP_001012090.1	ILMN_1376913	870170	S	1195	TGCATGCTGGCTGGAGATGGATACTGCGGTGCCCTAGGCTGCAGAAGTCT	3	-	116548509-116548558	3q36	"Rattus norvegicus zinc finger CCCH type containing 8 (Zc3h8), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]"		Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]	Zc3hdc8	Zc3hdc8
		Rattus norvegicus	RefSeq	GI_62661310-S	ILMN_51847	LOC498494	XM_573755.1	XM_573755.1		498494	62661310	XM_573755.1	LOC498494	XP_573755.1	ILMN_1351932	1410577	S	2871	GGGTGACCAAGGATCGGCAGGGTGCGAGGGAGTAAGGAATAAGCAACGTC					"PREDICTED: Rattus norvegicus similar to hypothetical gene supported by AK044523 (LOC498494), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62660577-S	ILMN_58328	LOC501923	XM_577347.1	XM_577347.1		501923	62660577	XM_577347.1	LOC501923	XP_577347.1	ILMN_1359525	7050040	S	907	GCAGCCACTCTCACATCATCGCCTGGAGGCTGCGCTGGCTTCTGTTTTCT				14q11	"PREDICTED: Rattus norvegicus similar to 1810013D10Rik protein (LOC501923), mRNA."
Receptor -> Other receptor;Phosphatase -> Protein phosphatase	Protein metabolism and modification -> Protein modification;Signal transduction -> Cell surface receptor mediated signal transduction;Signal transduction -> Cell communication	Rattus norvegicus	RefSeq	GI_62638886-S	ILMN_294947	PTPRH	XM_001071263.1	XM_001071263.1		171125	109461180	XM_001071263.1	Ptprh	XP_001071263.1	ILMN_1364327	5050112	S	2451	CCTGCCTGAGAGCTGGAACCTGAGAACAGGGGTGACGGTAGGTTTCCTGT				1q12	"PREDICTED: Rattus norvegicus protein tyrosine phosphatase, receptor type, H (Ptprh), mRNA."		The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	"Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]"
Receptor -> Other receptor;Phosphatase -> Protein phosphatase	Protein metabolism and modification -> Protein modification;Signal transduction -> Cell surface receptor mediated signal transduction;Signal transduction -> Cell communication	Rattus norvegicus	RefSeq	GI_62638884-S	ILMN_294947	PTPRH	XM_001071263.1	XM_001071263.1		171125	109461180	XM_001071263.1	Ptprh	XP_001071263.1	ILMN_1349302	1190546	S	214	GAATGCTCTGTGAGAGTGGAGAAGGATGGCGTCTACAGCACTTGGGAGAC				1q12	"PREDICTED: Rattus norvegicus protein tyrosine phosphatase, receptor type, H (Ptprh), mRNA."		The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	"Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate [goid 4725] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate [goid 16791] [evidence IEA]"
Ligase -> Ubiquitin-protein ligase	Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_56090282-S	ILMN_275409	RCHY1	NM_001007618.1	NM_001007618.1		289508	56090282	NM_001007618.1	Rchy1	NP_001007619.1	ILMN_1356257	6370537	S	1201	ACAGCTCTGGGATGTAGATGAAGCTCTGTGTGGAAGACCCCGATGTCCGG	14	+	17698510-17698559	14p22	"Rattus norvegicus ring finger and CHY zinc finger domain containing 1 (Rchy1), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]"		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC94651	MGC94651
Cell adhesion molecule -> CAM family adhesion molecule	Cell adhesion;Developmental processes -> Ectoderm development -> Neurogenesis	Rattus norvegicus	RefSeq	GI_62657537-A	ILMN_284924	DSCAM	NM_133587.1	NM_133587.1		171119	19424285	NM_133587.1	Dscam	NP_598271.1	ILMN_1376511	5570609	S	6384	GCCACCTTACCTCAGCGAGAGGGTGCAGAGCTGGGACAGGCAGCTAAAAT				11q12	"Rattus norvegicus Down syndrome cell adhesion molecule (Dscam), mRNA."		The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; The process by which the anatomical structures of dendrite are generated and organized. Morphogenesis pertains to the creation of form. A dendrite is a freely branching protoplasmic process of a nerve cell [goid 48813] [evidence ISS]; The process by which the anatomical structure of the retina is generated and organized in a camera-type eye during the post-embryonic life stage . Morphogenesis pertains to the creation of form [goid 60060] [evidence ISS]	"Combining with vascular endothelial growth factor to initiate a change in cell activity [goid 5021] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]"
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Neuronal activities	Rattus norvegicus	RefSeq	GI_54312091-S	ILMN_297572	FFAR2	NM_001005877.1	NM_001005877.1		292794	54312091	NM_001005877.1	Ffar2	NP_001005877.1	ILMN_1366001	4760139	S	843	CAGGGCCTTCGGGAAAGGTTTGCTACTACTCCGCAATCCCGGCTCCTCTA	1	-	85878552-85878601	1q21	"Rattus norvegicus free fatty acid receptor 2 (Ffar2), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with a lipid [goid 8289] [evidence IEA]
Protease -> Metalloprotease	Protein metabolism and modification -> Proteolysis;Signal transduction -> Cell communication -> Cell adhesion-mediated signaling	Rattus norvegicus	RefSeq	GI_38454259-S	ILMN_293628	ADAMTS5	NM_198761.1	NM_198761.1		304135	38454259	NM_198761.1	Adamts5	NP_942056.1	ILMN_1366387	2190113	S	2583	TAGCCACAGCAGCAACAAAGTGGGACTACACTCCCCGCAGCTACAGTGGG	11	-	25503531-25503580	11q11	"Rattus norvegicus ADAM metallopeptidase with thrombospondin type 1 motif, 5 (Adamts5), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]"	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	"Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]"
Transferase -> Other transferase	Lipid, fatty acid and steroid metabolism -> Steroid metabolism -> Steroid hormone metabolism;Sulfur metabolism	Rattus norvegicus	RefSeq	GI_34874652-S	ILMN_54916	RGD1562392_PREDICTED	XM_346007.3	XM_346007.3		367201	109485649	XM_346007.3	RGD1562392_predicted	XP_346008.3	ILMN_1352241	840168	S	78	CGACAACTGGAGTCAGATTCAGACCTTCAAGGCGAAGCCAGATGACCTCC	9	-	634602-634651	9q11	"PREDICTED: Rattus norvegicus similar to Sulfotransferase K1 (rSULT1C2) (predicted) (RGD1562392_predicted), mRNA."
Molecular function unclassified	Developmental processes -> Ectoderm development -> Neurogenesis	Rattus norvegicus	RefSeq	GI_62665724-S	ILMN_289819	TULP1_PREDICTED	XM_001078381.1	XM_001078381.1		309900	109509840	XM_001078381.1	Tulp1_predicted	XP_001078381.1	ILMN_1356240	3290148	S	1410	GCCTGATCGAGCTACACAACAAGCCACCCATCTGGAACGAAGACAGCGGC				20p12	"PREDICTED: Rattus norvegicus tubby like protein 1 (predicted) (Tulp1_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62649278-S	ILMN_274583	RGD1561587_PREDICTED	XR_007880.1	XR_007880.1		500510	109476831	XR_007880.1	RGD1561587_predicted		ILMN_1368898	6200673	S	463	GTGAGGACTAACAGAAAAGAGCCTGAGCTGCTGGAGTCCACTCCATACGG				5q33	"PREDICTED: Rattus norvegicus similar to ribosomal protein L21 (predicted) (RGD1561587_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62663279-S	ILMN_56246	LOC497710	XM_579705.1	XM_579705.1		497710	62663279	XM_579705.1	LOC497710	XP_579705.1	ILMN_1360357	3290500	S	1545	GGTCAAAAATAGATTGAGTGAATTTGCATATAGGATGGAGAAATACTTGG					"PREDICTED: Rattus norvegicus hypothetical gene supported by NM_175582 (LOC497710), mRNA."
		Rattus norvegicus	RefSeq	GI_62648331-I	ILMN_63541	TM7SF3_PREDICTED	XM_575722.1	XM_575722.1		297725	62648331	XM_575722.1	Tm7sf3_predicted	XP_575722.1	ILMN_1375613	3390154	S	2062	GTTCTTGTAGTTCTTGGACAGTCAGTCTGAATCTGTGGAGGGGGAGGCAG				4q44	"PREDICTED: Rattus norvegicus transmembrane 7 superfamily member 3 (predicted) (Tm7sf3_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Neuronal activities;Sensory perception -> Pheromone response	Rattus norvegicus	RefSeq	GI_34857496-S	ILMN_271528	LOC365807	XM_001059944.1	XM_001059944.1		365807	109466739	XM_001059944.1	LOC365807	XP_001059944.1	ILMN_1355167	4760519	S	2669	CAGCTTCTGTGAGTAGTGAGCTTAACAACACCGCAGAGTCGATTGTTCTG				2q31	"PREDICTED: Rattus norvegicus similar to putative pheromone receptor V2R2 (LOC365807), mRNA."
Protease -> Serine protease	Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_6981419-S	ILMN_286352	PRSS1	NM_012635.1	NM_012635.1		24691	6981419	NM_012635.1	Prss1	NP_036767.1	ILMN_1369322	4780239	S	511	TCTCAGGCTGACTGTGAAGCCGCCTACCCTGGGGAAATCACCAGCAGCAT	4	+	69188510-69188559	4q22	"Rattus norvegicus protease, serine, 1 (trypsin 1) (Prss1), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]"	"The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus [goid 7584] [evidence IEP]; The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism [goid 7586] [evidence TAS]; The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism [goid 7586] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a caffeine stimulus. Caffeine is an alkaloid found in numerous plant species, where it acts as a natural pesticide that paralyzes and kills certain insects feeding upon them [goid 31000] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus [goid 35094] [evidence IDA]"	"Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]"	Try1; RATPTRYI; PTRYI	Try1; RATPTRYI; PTRYI
Transporter -> Other transporter	Nucleoside, nucleotide and nucleic acid metabolism -> Nucleoside, nucleotide and nucleic acid transport;Transport -> Nucleoside, nucleotide and nucleic acid transport;Transport -> Other transport	Rattus norvegicus	RefSeq	GI_24233560-S	ILMN_272592	SLC35E4	NM_153316.2	NM_153316.2		266687	78126146	NM_153316.2	Slc35e4	NP_695228.2	ILMN_1348879	630148	S	1910	GTTGCACAGTCTTTCCTGGGGGCAGGATGTGAGGGTCACCAGAGAAGGCT	14	-	84569147-84569196	14q21	"Rattus norvegicus solute carrier family 35, member E4 (Slc35e4), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"		"Interacting selectizely with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate) [goid 31177] [evidence IEA]"	MGC93128	MGC93128
Nucleic acid binding -> Chromatin/chromatin-binding protein	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_62645076-S	ILMN_268283	EPC2_PREDICTED	XM_001055851.1	XM_001055851.1		362132	109469848	XM_001055851.1	Epc2_predicted	XP_001055851.1	ILMN_1368555	730563	S	3583	CATCCCAGGTTTTGGGAGGGGGGAGGGTTGTGGCAAGATTGTCTTTTCAA				3q12	"PREDICTED: Rattus norvegicus enhancer of polycomb homolog 2 (Drosophila) (predicted), transcript variant 2 (Epc2_predicted), mRNA."
Phosphatase -> Protein phosphatase	Protein metabolism and modification -> Protein modification;Developmental processes -> Ectoderm development;Cell structure and motility -> Cell motility	Rattus norvegicus	RefSeq	GI_62662231-S	ILMN_57156	PTPN20_PREDICTED	XM_224639.4	XM_224639.4		306281	109503070	XM_224639.4	Ptpn20_predicted	XP_224639.4	ILMN_1361962	2680242	S	1221	ACACTTGCAGTTCATCAAATGGCCAGACCATGGCACTCCTGCCTCAGCAG	16	+	9243006-9243055	16p16	"PREDICTED: Rattus norvegicus protein tyrosine phosphatase, non-receptor type 20 (predicted) (Ptpn20_predicted), mRNA."
Molecular function unclassified	Protein metabolism and modification -> Proteolysis;Cell cycle	Rattus norvegicus	RefSeq	GI_62663672-S	ILMN_62173	CUL2_PREDICTED	XM_341542.3	XM_341542.3		361258	109505034	XM_341542.3	Cul2_predicted	XP_341543.2	ILMN_1354773	6760014	S	3510	CCGCTGTCTTTATGTATGGTTTTGCCTTCCTACCTCGTGTGGATAAGGGC	17	-	62701402-62701451	17q12.1	"PREDICTED: Rattus norvegicus cullin 2 (predicted) (Cul2_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62663351-S	ILMN_286259	RGD1566043_PREDICTED	XM_001054929.1	XM_001054929.1		306798	109505515	XM_001054929.1	RGD1566043_predicted	XP_001054929.1	ILMN_1357945	4210022	S	2214	TCTCCCCGACTCTGCTAGTATCCCCAAACCATGCCCAAAGATGAGGGGCC				17p14	"PREDICTED: Rattus norvegicus similar to family with sequence similarity 22, member F (predicted) (RGD1566043_predicted), mRNA."
Nucleic acid binding -> Chromatin/chromatin-binding protein;Hydrolase -> Deacetylase	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Nucleoside, nucleotide and nucleic acid metabolism -> Chromatin packaging and remodeling	Rattus norvegicus	RefSeq	GI_62659030-S	ILMN_61722	SIRT4_PREDICTED	XM_222243.4	XM_222243.4		304539	109496066	XM_222243.4	Sirt4_predicted	XP_222243.4	ILMN_1375082	1230451	S	806	GACCCACGAGGTCTGACGATTTGGCTTGCCTGAAGCTGGATTCGCGCTGT	12	+	42399512-42399561	12q16	"PREDICTED: Rattus norvegicus sirtuin (silent mating type information regulation 2 homolog) 4 (S. cerevisiae) (predicted) (Sirt4_predicted), mRNA."
Select regulatory molecule -> Protease inhibitor -> Serine protease inhibitor	Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_40018557-S	ILMN_284514	SERPING1	NM_199093.1	NM_199093.1		295703	40018557	NM_199093.1	Serping1	NP_954524.1	ILMN_1374314	4200050	S	1511	GGGACCAGCGACACAAGTTCCCAGTCTTCATGGGCCGTGTATATGACCCC	3	-	67969038-67969087	3q24	"Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade G, member 1 (Serping1), mRNA."	"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]"	"Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes [goid 6958] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens [goid 45087] [evidence IEA]"	"Interacting selectively with any component or product of the complement cascade [goid 1848] [evidence ISS]; Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence ISS]; Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]"	MGC72585	MGC72585
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62652080-S	ILMN_51073	CCDC59_PREDICTED	XM_235154.4	XM_235154.4		314799	109480545	XM_235154.4	Ccdc59_predicted	XP_235154.1	ILMN_1371849	1340520	S	798	CTGACTGTTGCCCCCTTTTGTATGTGTATCGGGAGCCTCCTAACGGTGAA	7	+	44502267-44502316	7q21	"PREDICTED: Rattus norvegicus coiled-coil domain containing 59 (predicted) (Ccdc59_predicted), mRNA."
Transcription factor -> Other transcription factor;Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Developmental processes	Rattus norvegicus	RefSeq	GI_31745145-S	ILMN_291639	TBX3	NM_181638.1	NM_181638.1		353305	31745145	NM_181638.1	Tbx3	NP_853669.1	ILMN_1358637	4480358	S	1782	GTCGCCTTTTGGGAGCCTGTTTCCTTACCCCTACACATACATGGCTGCAG	12	-	38155894-38155943	12q16	"Rattus norvegicus T-box 3 (Tbx3), mRNA."	"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]"	"The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence ISS]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The specification of the anterior/posterior axis of the embryo by the products of genes expressed maternally and genes expressed in the zygote [goid 8595] [evidence ISS]; The process whose specific outcome is the progression of the male genitalia over time, from its formation to the mature structure [goid 30539] [evidence ISS]; The process whose specific outcome is the progression of the female genitalia over time, from formation to the mature structure [goid 30540] [evidence ISS]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; The regulated release of luteinizing hormone, a gonadotropic glycoprotein hormone secreted by the anterior pituitary [goid 32275] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the arm are generated and organized. Morphogenesis pertains to the creation of form. In humans, the arms are the two upper limbs of the body from the shoulder to the hand [goid 35117] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the digit are generated and organized. Morphogenesis pertains to the creation of form. A digit is one of the terminal divisions of an appendage. For example a finger or toe [goid 42733] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of myoblast differentiation. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45662] [evidence ISS]; Any process that activates or increases the rate or extent of progression through the cell cycle [goid 45787] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]; The regulated release of follicle-stimulating hormone, a gonadotropic glycoprotein hormone secreted by the anterior pituitary [goid 46884] [evidence ISS]; The process by which the anatomical structures of the mesoderm are generated and organized. Morphogenesis pertains to the creation of form [goid 48332] [evidence ISS]; Progression of the cell from its inception to the end of its lifespan [goid 7569] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The process, occurring in the embryo, by which the anatomical structures of the digit are generated and organized. Morphogenesis pertains to the creation of form. A digit is one of the terminal divisions of an appendage. For example a finger or toe [goid 42733] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of DNA-dependent transcription [goid 45892] [evidence ISS]"	"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Any activity that stops or downregulates transcription of genes globally, and is not specific to a particular gene or gene set [goid 16565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62652060-S	ILMN_50193	RGD1311640_PREDICTED	XM_235095.4	XM_235095.4		314787	109480527	XM_235095.4	RGD1311640_predicted	XP_235095.4	ILMN_1374743	5130010	S	7312	TCAAGGACCAAACTGGAGCCGAAAGTAGCACACCTGATTCTGATCAACTG	7	+	38224201-38224236:38227025-38227038	7q13	"PREDICTED: Rattus norvegicus similar to Hypothetical protein KIAA0373 (predicted) (RGD1311640_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62655699-S	ILMN_66977	LOC497866	XM_573046.1	XM_573046.1		497866	62655699	XM_573046.1	LOC497866	XP_573046.1	ILMN_1366831	1190300	S	5	AGGAAGAGGCGAGGAGGCGGGTTGTCGGGCTGCGCTGGGTAGCTGTGCTT					"PREDICTED: Rattus norvegicus hypothetical gene supported by BC083674 (LOC497866), mRNA."
Select regulatory molecule -> G-protein modulator -> Other G-protein modulator;Select calcium binding protein;Membrane traffic protein	Intracellular protein traffic -> Endocytosis;Neuronal activities -> Synaptic transmission -> Neurotransmitter release	Rattus norvegicus	RefSeq	GI_57164100-S	ILMN_283596	EPS15	NM_001009424.1	NM_001009424.1		313474	57164100	NM_001009424.1	Eps15	NP_001009424.1	ILMN_1358902	6840504	S	2650	GATTGAGTGGGCCAAGAGGGAGAGTGAGCGAGAAGAAGAGCAGAGGCTCG	5	+	130738695-130738744	5q35	"Rattus norvegicus epidermal growth factor receptor pathway substrate 15 (Eps15), mRNA."	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]		Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62659219-S	ILMN_284478	RGD1309602_PREDICTED	XM_001053834.1	XM_001053834.1		304731	109498513	XM_001053834.1	RGD1309602_predicted	XP_001053834.1	ILMN_1352654	380086	S	1884	GCACTCCTACTGTTCAAATCGTCGTTTCCCTTGGGCTTTGCTGACACAGG				13q11	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2500001K11 (predicted) (RGD1309602_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62647044-S	ILMN_271704	RGD1565373_PREDICTED	XM_001069608.1	XM_001069608.1		296985	109473367	XM_001069608.1	RGD1565373_predicted	XP_001069608.1	ILMN_1373158	5270037	S	1706	AACAGCTTCCCCCATGCGTTGGAGAGAACAGCCCGGAGCTGGAGGCTGCT				4q22	"PREDICTED: Rattus norvegicus similar to CD69 antigen (p60, early T-cell activation antigen) (predicted) (RGD1565373_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47577296	ILMN_295144	OLR720	NM_001001067.1	NM_001001067.1		405955	47577296	NM_001001067.1	Olr720	NP_001001067.1	ILMN_1650612	3140152	S	580	GGCCTCTTAGTGATGGCCAATGGAGGGCTGATCTGCACGGTTGTGTTTCT	3	-	74269269-74269318	3q24	"Rattus norvegicus olfactory receptor 720 (Olr720), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr720	Olr720
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62644505-A	ILMN_301082	GPR177	NM_199408.2	NM_199408.2		362065	54262192	NM_199408.2	Gpr177	NP_955440.1	ILMN_1376886	1090711	S	1678	GAACTATGGGGAAGACCAGTCTAATGGTGACCTGGGTGTCCACAGCGGGG	2	+	258116699-258116724:258127260-258127283	2q45	"Rattus norvegicus G protein-coupled receptor 177 (Gpr177), transcript variant 1, mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"			Gpr177	Gpr177
		Rattus norvegicus	RefSeq	GI_62659781-S	ILMN_289300	LOC498289	XR_007707.1	XR_007707.1		498289	109499106	XR_007707.1	LOC498289		ILMN_1372078	5670632	S	1220	GCCCTGTCAGGAGTGCCCCCCAGAGTTCCCATTTGGTATAACAGTGACAG				13q25	"PREDICTED: Rattus norvegicus similar to Opsin-3 (Encephalopsin) (Panopsin) (LOC498289), mRNA."
Ligase -> Other ligase	Protein metabolism and modification -> Protein modification;Apoptosis -> Other apoptosis;Cell cycle -> Cell cycle control	Rattus norvegicus	RefSeq	GI_24475720-S	ILMN_264538	NAE1	NM_032072.2	NM_032072.2		84019	24475720	NM_032072.2	Nae1	NP_114461.1	ILMN_1369991	3140341	S	1495	CGGAGCTGCTGAGCCACACACCGTTGCTGCATTCCTGGGAGGAGCTGCTG	19	+	406594-406635:408444-408451	19p14	"Rattus norvegicus NEDD8 activating enzyme E1 subunit 1 (Nae1), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water [goid 5626] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]"	"The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; A cell cycle checkpoint which halts replication in response to nucleotide depletion [goid 31574] [evidence ISS]; A cell cycle checkpoint which halts replication in response to nucleotide depletion [goid 31574] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence ISS]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Covalent attachment of the ubiquitin-like protein NEDD8 (RUB1) to another protein [goid 45116] [evidence ISS]; Covalent attachment of the ubiquitin-like protein NEDD8 (RUB1) to another protein [goid 45116] [evidence IEA]"	"Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the initiation of the NEDD8 (RUB1) conjugation cascade [goid 19781] [evidence ISS]; Catalysis of the initiation of the NEDD8 (RUB1) conjugation cascade [goid 19781] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence IEA]"
		Rattus norvegicus	RefSeq	GI_62657404-S	ILMN_62074	LOC501736	XM_577137.1	XM_577137.1		501736	62657404	XM_577137.1	LOC501736	XP_577137.1	ILMN_1373611	7050278	S	293	CTTGCAGAACCTCACGCTGGAGGATGCAGCTCTCTTGCTGTTGCTGTTGG				10q32.2	"PREDICTED: Rattus norvegicus similar to mast cell-derived paired immunoglobulin-like receptor1 (LOC501736), mRNA."
Signaling molecule -> Growth factor	Signal transduction -> Cell surface receptor mediated signal transduction -> Receptor protein tyrosine kinase signaling pathway;Signal transduction -> Intracellular signaling cascade -> MAPKKK cascade;Signal transduction -> Cell communication -> Ligand-mediated signaling;Immunity and defense -> Stress response;Developmental processes -> Mesoderm development -> Angiogenesis;Cell proliferation and differentiation;Oncogenesis -> Other oncogenesis	Rattus norvegicus	RefSeq	GI_13929197-S	ILMN_277268	VEGFA	NM_031836.1	NM_031836.1		83785	13929197	NM_031836.1	Vegfa	NP_114024.1	ILMN_1371686	4120671	S	218	AGCCGTCCTGTGTGCCCCTAATGCGGTGTGCGGGCTGCTGCAATGATGAA	9	+	10527661-10527710	9q12	"Rattus norvegicus vascular endothelial growth factor A (Vegfa), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers [goid 5604] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [evidence ISS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"	"Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence TAS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IMP]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure [goid 1541] [evidence ISS]; The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood [goid 1568] [evidence ISS]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence ISS]; Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence ISS]; The reorganization or renovation of existing blood vessels [goid 1974] [evidence IMP]; The process of activating or increasing the rate or extent of mesenchymal cell proliferation. Mesenchymal cells are loosely organized embryonic cells [goid 2053] [evidence ISS]; A process which directly inhibits any of the steps required for cell death by apoptosis [goid 6916] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IDA]; The process whose specific outcome is the progression of the mesoderm over time, from its formation to the mature structure. The mesoderm is the middle germ layer that develops into muscle, bone, cartilage, blood and connective tissue [goid 7498] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence TAS]; Any process that modulates the surface configuration of a cell [goid 8360] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction [goid 9967] [evidence IDA]; The orderly movement of cells from one site to another, often during the development of a multicellular organism [goid 16477] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium [goid 30855] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of vascular endothelial growth factor receptor signaling pathway activity [goid 30949] [evidence ISS]; An immune response which is associated with resistance to intracellular bacteria, fungi, and protozoa, and pathological conditions such as arthritis, and which is typically orchestrated by the production of particular cytokines by T-helper 1 cells, most notably interferon-gamma, IL-2, and lymphotoxin [goid 42088] [evidence IDA]; Development of a photoreceptor, a sensory cell in the eye that reacts to the presence of light. They usually contain a pigment that undergoes a chemical change when light is absorbed, thus stimulating a nerve [goid 42462] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that increases the extent to which blood vessels can be pervaded by fluid [goid 43117] [evidence IMP]; Any process involved in the maintenance of an equilibrium of the surface-active lipoprotein mixture which coats the alveoli [goid 43129] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the migration of the endothelial cells of blood vessels [goid 43536] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of bone resorption [goid 45779] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands [goid 48008] [evidence ISS]; The series of molecular signals generated as a consequence of vascular endothelial growth factor receptor binding to one of its physiological ligands [goid 48010] [evidence ISS]; Prevention of degradation of mRNA molecules. In the absence of compensating changes in other processes, the slowing of mRNA degradation can result in an overall increase in the population of active mRNA molecules [goid 48255] [evidence IDA]; The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways [goid 48286] [evidence IMP]; A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state [goid 48469] [evidence ISS]; The process by which the anatomical structures of blood vessels are generated and organized. Morphogenesis pertains to the creation of form. The blood vessel is the vasculature carrying blood [goid 48514] [evidence ISS]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence ISS]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IMP]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence ISS]; Any process that activates or increases the rate or extent of epithelial cell proliferation [goid 50679] [evidence ISS]; Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [pmid 15258583] [evidence NAS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]"	"Interacting selectively with a fibronectin, a group of related adhesive glycoproteins of high molecular weight found on the surface of animal cells, connective tissue matrices, and in extracellular fluids [goid 1968] [evidence ISS]; Interacting selectively with the platelet-derived growth factor receptor [goid 5161] [evidence ISS]; Interacting selectively with any vascular endothelial growth factor receptor [goid 5172] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IDA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with vascular endothelial growth factor receptor 1 [goid 43183] [evidence ISS]; Interacting selectively with vascular endothelial growth factor receptor 2 [goid 43184] [evidence ISS]; Interacting selectively with any component on the surface of a cell [goid 43498] [evidence ISS]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence IEA]"	Vegf	Vegf
Nucleic acid binding -> Other RNA-binding protein	Biological process unclassified	Rattus norvegicus	RefSeq	GI_27465596-S	ILMN_281785	PHAX	NM_173133.1	NM_173133.1		286917	27465596	NM_173133.1	Phax	NP_775156.1	ILMN_1369867	4230075	S	1314	AGTAATGTATGTGGTAGTCGTGCCGTCGCCGCAGTGTGGAAGGTGGCTGC	18	+	52361279-52361328	18q12.1	"Rattus norvegicus phosphorylated adaptor for RNA export (Phax), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62638911-S	ILMN_50077	LOC365184	XM_344856.2	XM_344856.2		365184	62638911	XM_344856.2	LOC365184	XP_344857.2	ILMN_1354977	4540537	S	3827	CTCAGACAGCCCCAAAATATGGTGGACAGCTCCTCATATACCCTTGTTTC				1q21	"PREDICTED: Rattus norvegicus similar to NACHT, leucine rich repeat and PYD containing 4B (LOC365184), mRNA."
		Rattus norvegicus	RefSeq	GI_62639043-S	ILMN_57280	LOC292630	XM_218301.3	XM_218301.3		292630	62639043	XM_218301.3	LOC292630	XP_218301.3	ILMN_1349583	1770148	S	1362	GCTTCAGGAGCCCAAATGGCGGATGGAGATAAAAGAGAAGATGCCGAGTG					"PREDICTED: Rattus norvegicus similar to OBOX4 (LOC292630), mRNA."
Nucleic acid binding -> Helicase -> DNA helicase	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_62648160-S	ILMN_266295	CHD4	XM_001063352.1	XM_001063352.1		117535	109474229	XM_001063352.1	Chd4	XP_001063352.1	ILMN_1359896	670537	S	6382	CAGCTACCTCTGTTGGCACCTTTTTAATACCAGGAACCCAGCGGCTCCAG				4q42	"PREDICTED: Rattus norvegicus chromodomain helicase DNA binding protein 4 (Chd4), mRNA."	"The ordered and organized complex of DNA and protein that forms the chromosome [goid 785] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"The formation or destruction of chromatin structures [goid 6333] [evidence IEA]; The series of molecular signals initiated in response to osmotic change [goid 7231] [evidence NAS]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]; Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 45449] [evidence IEA]"	"Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix [goid 8026] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the hydrolysis of any acid anhydride which contains phosphorus [goid 16818] [evidence IEA]; Catalysis of the hydrolysis of any acid anhydride which contains phosphorus [goid 16818] [evidence IEA]"
Transcription factor -> Zinc finger transcription factor;Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Developmental processes	Rattus norvegicus	RefSeq	GI_62663434-S	ILMN_54391	RREB1_PREDICTED	XM_225250.4	XM_225250.4		306873	109504781	XM_225250.4	Rreb1_predicted	XP_225250.4	ILMN_1361372	5220021	S	4811	CCAGGCACAGCAAGCACCACGGGAAAGACAGCGATAAAGATGAGCGGGCT	17	-	33128443-33128492	17p12	"PREDICTED: Rattus norvegicus ras responsive element binding protein 1 (predicted) (Rreb1_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62654631-S	ILMN_262909	LOC691575	XM_001078898.1	XM_001078898.1		691575	109513637	XM_001078898.1	LOC691575	XP_001078898.1	ILMN_1354122	3360095	S	1092	GGCGTTTTCCTTAATACCCCCACTCCAACAAAACAGACCTACTTCCACTC	Un|NW_047892.1	+	1212288-1212337		"PREDICTED: Rattus norvegicus similar to similar to RIKEN cDNA 1700001E04 (LOC691575), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62663894-S	ILMN_274657	MCM10_PREDICTED	XM_001071383.1	XM_001071383.1		307126	109506165	XM_001071383.1	Mcm10_predicted	XP_001071383.1	ILMN_1352298	1690671	S	3209	ACACTCGGCTTCTGGTTGATGAGTTTCAGTGCTGATGTTGGAGGCCACGG				17q12.3	"PREDICTED: Rattus norvegicus minichromosome maintenance deficient 10 (S. cerevisiae) (predicted) (Mcm10_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47577082-S	ILMN_262366	OLR30	NM_001000120.1	NM_001000120.1		293091	47577082	NM_001000120.1	Olr30	NP_001000120.1	ILMN_1359336	5570129	S	18	GGTGGCTGGGTTTCTCCTGGAGGTTTTTGCTGAGACTTGGGAGTTCAGGC	1	+	142835611-142835660	1q32	"Rattus norvegicus olfactory receptor 30 (Olr30), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr30	Olr30
Membrane traffic protein -> Vesicle coat protein;Membrane traffic protein -> Other membrane traffic protein	Intracellular protein traffic -> Other intracellular protein traffic	Rattus norvegicus	RefSeq	GI_62658881-S	ILMN_53152	VPS29_PREDICTED	XM_213780.4	XM_213780.4		288666	109495912	XM_213780.4	Vps29_predicted	XP_213780.2	ILMN_1366950	5360711	S	1052	GAGGCAGAGGCGGGTGGATCTCTTCAGCATTTTTTGCCAGTTTGGTCTAC	12	-	35403409-35403458	12q16	"PREDICTED: Rattus norvegicus vacuolar protein sorting 29 (S. pombe) (predicted) (Vps29_predicted), mRNA."
Nucleic acid binding -> Nuclease	Nucleoside, nucleotide and nucleic acid metabolism;Other metabolism	Rattus norvegicus	RefSeq	GI_62651368-S	ILMN_280901	RGD1560842_PREDICTED	XM_001056252.1	XM_001056252.1		299415	109480062	XM_001056252.1	RGD1560842_predicted	XP_001056252.1	ILMN_1367293	3610348	S	614	GGTGCAGAAGACCCCGAATCGACCTAGAAGAGATGGGGCCGTCTTTGGAG				6q33	"PREDICTED: Rattus norvegicus similar to Brix domain containing 1 (predicted) (RGD1560842_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_56090418-S	ILMN_287988	RGD1359380	NM_001007676.1	NM_001007676.1		303922	56090418	NM_001007676.1	RGD1359380	NP_001007677.1	ILMN_1350668	5390050	S	1119	CGGCTGCTTGGGAAGGAGGCTGAGAAAGGAAGTCAGTGTGAGGCCAGCTA	11	+	64031557-64031606	11q21	"Rattus norvegicus similar to hypothetical protein MGC7537 (RGD1359380), mRNA."	"A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]"	"Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]"	MGC94152	MGC94152
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576812-S	ILMN_282848	OLR825	NM_001000904.1	NM_001000904.1		405214	47576812	NM_001000904.1	Olr825	NP_001000904.1	ILMN_1359309	6980465	S	921	CAGGGATGCTCTGTCCAAGGTTCAATTGCACAGATATCAGAGGATGAAGG	4	+	152758460-152758509	4q42	"Rattus norvegicus olfactory receptor 825 (Olr825), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	SCR G-14; Olr825; SCR G-15	SCR G-14; Olr825; SCR G-15
Miscellaneous function -> Other miscellaneous function protein	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62664669-S	ILMN_53872	RGD1308279_PREDICTED	XM_225732.4	XM_225732.4		307236	109506833	XM_225732.4	RGD1308279_predicted	XP_225732.4	ILMN_1364804	1980017	S	3397	GTGGAACTACTGTCCTCGCTCTTGTGGGTGTGGAAAATCGACGTGGCCTC	18	-	77018206-77018255	18q12.3	"PREDICTED: Rattus norvegicus similar to mKIAA0863 protein (predicted) (RGD1308279_predicted), mRNA."
Cytoskeletal protein -> Actin family cytoskeletal protein -> Non-motor actin binding protein	Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_62659425-S	ILMN_70052	ASPM_PREDICTED	XM_213891.4	XM_213891.4		289054	109497970	XM_213891.4	Aspm_predicted	XP_213891.2	ILMN_1369326	6180075	S	9022	TACCGGGAGAAGCCTGGTGACCGAGTTGCCGAGAAGAGTGCCAGCATTTT	13	+	52858681-52858730	13q13	"PREDICTED: Rattus norvegicus asp (abnormal spindle)-like, microcephaly associated (Drosophila) (predicted) (Aspm_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62667140-S	ILMN_68674	LOC501606	XM_577006.1	XM_577006.1		501606	62667140	XM_577006.1	LOC501606	XP_577006.1	ILMN_1351952	5890129	S	127	GCCCCTACCAAGGCGGGGTCTTTTTCCTGGCCATCCATTTCCCAACAGAT					"PREDICTED: Rattus norvegicus similar to ubiquitin-conjugating enzyme E2D 3 isoform 2 (LOC501606), mRNA."
		Rattus norvegicus	RefSeq	GI_62652637-S	ILMN_56308	LOC300043	XM_216963.3	XM_216963.3		300043	62652637	XM_216963.3	LOC300043	XP_216963.3	ILMN_1355653	5570372	S	3689	AGACCTTATCGGTTCCTTGGCCTGCTCCGCCGCCAGGGGTCAGCAGAACT					"PREDICTED: Rattus norvegicus similar to poly (ADP-ribose) polymerase family, member 10 (LOC300043), mRNA."
		Rattus norvegicus	RefSeq	GI_62661563-S	ILMN_49463	LOC498525	XM_573794.1	XM_573794.1		498525	62661563	XM_573794.1	LOC498525	XP_573794.1	ILMN_1352118	4200164	S	1015	TGGGCGTTAGCTTGGCTCGCTCGTTGCTCGCTTCCGTGTTCTGGGGCTCA					"PREDICTED: Rattus norvegicus similar to Bm403207 (LOC498525), mRNA."
Transferase -> Acetyltransferase	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Signal transduction -> Intracellular signaling cascade -> Other intracellular signaling cascade;Signal transduction -> Cell communication;Developmental processes;Oncogenesis -> Other oncogenesis	Rattus norvegicus	RefSeq	GI_62644554-S	ILMN_294938	GIPC2	NM_001037210.1	NM_001037210.1		365960	81295360	NM_001037210.1	Gipc2	NP_001032287.1	ILMN_1351859	4070021	S	938	TCAGTGATGTGAAACAAGGCAGATGATGGTGTGGCCGGTCTTCCCGCAGA				2q45	"Rattus norvegicus GIPC PDZ domain containing family, member 2 (Gipc2), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC116274; Gipc2	MGC116274; Gipc2
Protease -> Cysteine protease;Select calcium binding protein -> Calmodulin related protein	Protein metabolism and modification -> Proteolysis;Signal transduction	Rattus norvegicus	RefSeq	GI_62650359-S	ILMN_274847	CAPN13	NM_001025133.1	NM_001025133.1		362701	68341950	NM_001025133.1	Capn13	NP_001020304.1	ILMN_1372275	770086	S	1630	GATGCCAGCCAACTTCAGAGCCTTCTCAACCAGGAGTACCTAACAGGGCC	6	+	22206274-22206319:22206404-22206407	6q13	"Rattus norvegicus calpain 13 (Capn13), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]"	The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]	"Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium [goid 4198] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]"	MGC109045	MGC109045
Defense/immunity protein -> Antibacterial response protein;Defense/immunity protein -> Other defense and immunity protein	Immunity and defense -> Other immune and defense;Immunity and defense -> Stress response;Immunity and defense -> Cytokine/chemokine mediated immunity	Rattus norvegicus	RefSeq	GI_8392902-S	ILMN_270531	APCS	NM_017170.1	NM_017170.1		29339	8392902	NM_017170.1	Apcs	NP_058866.1	ILMN_1374373	130452	S	592	TGTGGGAGAGATTGCAGATTTGTACATGTGGGACAGTGTGCTGACCCCAG	13	-	89112975-89113024	13q24	"Rattus norvegicus serum amyloid P-component (Apcs), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]"	"The aggregation, arrangement and bonding together of a set of components to form a protein complex [goid 6461] [evidence IPI]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein stimulus [goid 51789] [evidence ISS]"	"Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]"	Sap	Sap
		Rattus norvegicus	RefSeq	GI_62663299-S	ILMN_57616	LOC498714	XM_579859.1	XM_579859.1		498714	62663299	XM_579859.1	LOC498714	XP_579859.1	ILMN_1370625	2810041	S	476	GCCTGTCCCACCTGATGATTCAAGCAGAACCTCGATGGGGGATCCTGTCG					"PREDICTED: Rattus norvegicus LOC498714 (LOC498714), mRNA."
		Rattus norvegicus	RefSeq	GI_62648805	ILMN_64718	SEC61G_PREDICTED	XM_346040.2	XM_346040.2		367253	62648805	XM_346040.2	Sec61g_predicted	XP_346041.2	ILMN_1650904	4730685	S	225	AACAGGCAGCACTATTAGCCCCCACCCAGGTTCCCTCGGATCTGATGATG				19q11	"PREDICTED: Rattus norvegicus SEC61, gamma subunit (predicted) (Sec61g_predicted), mRNA."
Transferase -> Glycosyltransferase	Protein metabolism and modification -> Protein modification -> Protein glycosylation;Immunity and defense -> Other immune and defense	Rattus norvegicus	RefSeq	GI_41054895-S	ILMN_292414	FUT7	NM_199491.1	NM_199491.1		296564	41054895	NM_199491.1	Fut7	NP_955785.1	ILMN_1350963	4200367	S	1961	CCCAGGGGTTGTGGGAGAAGGATGGTGTGGATGATTCTGGGCCTTTGACA	3	+	3592937-3592986	3p13	"Rattus norvegicus fucosyltransferase 7 (alpha (1,3) fucosyltransferase) (Fut7), mRNA."	"A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]"	"Catalysis of the transfer of a fucosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8417] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]"
Extracellular matrix -> Extracellular matrix structural protein	Developmental processes -> Mesoderm development -> Skeletal development	Rattus norvegicus	RefSeq	GI_55741483-S	ILMN_264620	MATN1	NM_001006979.1	NM_001006979.1		297894	55741483	NM_001006979.1	Matn1	NP_001006980.1	ILMN_1350211	6220053	S	1742	ATGTTTGGGAGCAGGGATGTGTGCAGAGGTGAAAGCGCAGAGAAGGGGCG	5	+	149815200-149815249	5q36	"Rattus norvegicus matrilin 1, cartilage matrix protein (Matn1), mRNA."	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence IEA]; A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity [goid 5578] [evidence ISS]		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC95132	MGC95132
		Rattus norvegicus	RefSeq	GI_62667336-S	ILMN_56989	LOC317414	XM_228832.3	XM_228832.3		317414	62667336	XM_228832.3	LOC317414	XP_228832.3	ILMN_1356679	1050484	S	610	GTCATAACAAACTGCTGGGTGAGATTCGGGTGACGGATGACAAGATGCCG					"PREDICTED: Rattus norvegicus similar to Mitochondrial processing peptidase beta subunit, mitochondrial precursor (Beta-MPP) (P-52) (LOC317414), mRNA."
		Rattus norvegicus	RefSeq	GI_62647870-S	ILMN_64445	FOXP1_PREDICTED	XM_216227.3	XM_216227.3		297480	62647870	XM_216227.3	Foxp1_predicted	XP_216227.3	ILMN_1351093	130632	S	2573	CAAGCCTTCGCCCGAATTCGAGACTCCAGTGGACGACCTATTTGCACAGC				4q34	"PREDICTED: Rattus norvegicus forkhead box P1 (predicted) (Foxp1_predicted), mRNA."
Kinase -> Protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation	Rattus norvegicus	RefSeq	GI_59709472-S	ILMN_47996	PDK1	NM_053826.2	NM_053826.2		116551	59709472	NM_053826.2	Pdk1	NP_446278.2	ILMN_1363982	1240427	S	1356	TGGTGTGTGCCCAGCAGAGAGCCGAAAGACATGACGACGTTCCGAAGCTC	3	+	54319017-54319066	3q22	"Rattus norvegicus pyruvate dehydrogenase kinase, isozyme 1 (Pdk1), nuclear gene encoding mitochondrial protein, mRNA."	"A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]"	"The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell [goid 7166] [evidence IMP]; The posttranslational phosphorylation of peptidyl-histidine to form peptidyl-1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine) or peptidyl-3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine) [goid 18106] [evidence IEA]; The posttranslational phosphorylation of peptidyl-histidine to form peptidyl-1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine) or peptidyl-3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine) [goid 18106] [evidence IEA]"	"Catalysis of the phosphorylation of a specific transcription regulator in response to the presence of a particular signal substance outside the cell [goid 155] [evidence IEA]; Catalysis of the reaction: ATP + pyruvate dehydrogenase (acetyl-transferring) = ADP + pyruvate dehydrogenase (acetyl-transferring) phosphate [goid 4740] [evidence IDA]; Catalysis of the reaction: ATP + pyruvate dehydrogenase (acetyl-transferring) = ADP + pyruvate dehydrogenase (acetyl-transferring) phosphate [goid 4740] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the phosphorylation of a specific transcription regulator in response to the presence of a particular signal substance outside the cell [goid 155] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]"	MGC108625	MGC108625
Ion channel -> Voltage-gated ion channel -> Voltage-gated potassium channel	Signal transduction -> Cell communication;Transport -> Ion transport -> Cation transport;Neuronal activities -> Synaptic transmission	Rattus norvegicus	RefSeq	GI_21217558-A	ILMN_265858	KCNC2	NM_139216.1	NM_139216.1		246153	41281705	NM_139216.1	Kcnc2	NP_631962.1	ILMN_2039099	4040403	A	1810	GTTGACGACAGGTGATTACACGTGCGCTTCTGATGGAGGAATCAGGAAAG	7	+	51480354-51480403	7q21	"Rattus norvegicus potassium voltage gated channel, Shaw-related subfamily, member 2 (Kcnc2), transcript variant a, mRNA."	"A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]"	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kv3.2; KShIIIA	Kv3.2; KShIIIA
Ion channel -> Voltage-gated ion channel -> Voltage-gated potassium channel	Signal transduction -> Cell communication;Transport -> Ion transport -> Cation transport;Neuronal activities -> Synaptic transmission	Rattus norvegicus	RefSeq	GI_41281705-I	ILMN_265858	KCNC2	NM_139216.1	NM_139216.1		246153	41281705	NM_139216.1	Kcnc2	NP_631962.1	ILMN_1375744	7000017	I	2922	CCCCTGTATCGTGTACCTTTTGTGACCATCTCAAGGTGCATGCCTAATCG	7	+	51487816-51487865	7q21	"Rattus norvegicus potassium voltage gated channel, Shaw-related subfamily, member 2 (Kcnc2), transcript variant a, mRNA."	"A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential [goid 8076] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]"	Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel [goid 5249] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kv3.2; KShIIIA	Kv3.2; KShIIIA
		Rattus norvegicus	RefSeq	GI_62643105-S	ILMN_268272	RGD1566229_PREDICTED	XR_008091.1	XR_008091.1		499556	109466238	XR_008091.1	RGD1566229_predicted		ILMN_1361096	2900369	S	353	ACAAAGGTGACTGGCCTACGCTGAGAAGAAAGCTGCTGGCAAAGGGGACG				2q22	"PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L7a (predicted) (RGD1566229_predicted), mRNA."
Kinase	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62665462-S	ILMN_289000	RGD1306192_PREDICTED	XM_001055529.1	XM_001055529.1		361443	109509071	XM_001055529.1	RGD1306192_predicted	XP_001055529.1	ILMN_1348799	2570072	S	502	GGGAAACCGCTGGCCCTGGTGGAGGAGATCAGGAAGAGACGTGATGTGAA				19q12	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310079N02 (predicted) (RGD1306192_predicted), mRNA."
Nucleic acid binding -> mRNA processing factor -> mRNA splicing factor	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62667465-S	ILMN_64136	HTATSF1_PREDICTED	XM_229199.4	XM_229199.4		317612	109511264	XM_229199.4	Htatsf1_predicted	XP_229199.4	ILMN_1372024	2060242	S	2333	GGGGAATGTGAAGGAAGATGGGTCTCAATCCACAGACAGCAGCTTTGCCC	X	+	141711246-141711295	Xq36	"PREDICTED: Rattus norvegicus HIV TAT specific factor 1 (predicted) (Htatsf1_predicted), mRNA."
Transcription factor -> Zinc finger transcription factor -> Other zinc finger transcription factor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Developmental processes -> Mesoderm development -> Heart development	Rattus norvegicus	RefSeq	GI_62646503-S	ILMN_290313	GATA5	NM_001024316.1	NM_001024316.1		499951	66730289	NM_001024316.1	Gata5	NP_001019487.1	ILMN_1367821	1400551	S	1918	GTGCACAGCTTGCTTATGGACGCAGGACTGCCAGAGACCAGTGTACAGGT	3	-	169385440-169385489	3q43	"Rattus norvegicus GATA binding protein 5 (Gata5), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IEA]"	"Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]"
Nucleic acid binding -> Chromatin/chromatin-binding protein	Nucleoside, nucleotide and nucleic acid metabolism -> DNA metabolism -> DNA repair;Developmental processes -> Meiosis;Cell cycle -> Mitosis -> Chromosome segregation	Rattus norvegicus	RefSeq	GI_13928945-S	ILMN_301601	SMC1A	NM_031683.1	NM_031683.1		63996	13928945	NM_031683.1	Smc1a	NP_113871.1	ILMN_1352992	510181	S	3692	AAGTCCTGACCTTCGACCTCACCAAGTATCCAGATGCCAACCCTAACCCC	X	+	41547802-41547830	Xq21	"Rattus norvegicus structural maintenance of chromosomes 1A (Smc1a), mRNA."	"A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules [goid 776] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]"	"A point in the eukaryotic cell cycle where progress through the cycle can be halted until conditions are suitable for the cell to proceed to the next stage [goid 75] [evidence ISS]; A point in the eukaryotic cell cycle where progress through the cycle can be halted until conditions are suitable for the cell to proceed to the next stage [goid 75] [evidence ISS]; The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway [goid 6281] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence ISS]; Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations [goid 7126] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation [goid 9314] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation [goid 9314] [evidence ISS]; A cascade of processes induced by the detection of DNA damage within a cell [goid 42770] [evidence ISS]; A cascade of processes induced by the detection of DNA damage within a cell [goid 42770] [evidence ISS]; A process that is carried out at the cellular level that results in the formation, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information [goid 51276] [evidence IEA]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction [goid 16887] [evidence IEA]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]"	SB1.8; KIAA0178	SB1.8; KIAA0178
Nucleic acid binding -> Chromatin/chromatin-binding protein	Biological process unclassified	Rattus norvegicus	RefSeq	GI_34851369-S	ILMN_275618	BRD7_PREDICTED	XM_001066875.1	XM_001066875.1		361374	109508503	XM_001066875.1	Brd7_predicted	XP_001066875.1	ILMN_2039928	3990373	S	1912	GAACGAGCGGCTGAGCACTAGGCCTCCTCCCAATATGATCTGTCTCTTGG				19p11	"PREDICTED: Rattus norvegicus bromodomain containing 7 (predicted) (Brd7_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62651941-S	ILMN_67332	LOC314592	XM_234852.3	XM_234852.3		314592	62651941	XM_234852.3	LOC314592	XP_234852.3	ILMN_1367751	2760397	S	2237	CGTGCTGTGGAGTCAATTTCAGAAGCATAAAGCACTTCACGCTGTCCCGG					"PREDICTED: Rattus norvegicus similar to 9030612M13Rik protein (predicted) (LOC314592), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47576080-S	ILMN_283794	OLR140	NM_001000162.1	NM_001000162.1		293279	47576080	NM_001000162.1	Olr140	NP_001000162.1	ILMN_1369138	2650348	S	882	CAGTGCAAAGACCAAACAGATTCGCCAGGGAATCACTCACCTTCTCTTTC	1	+	161852808-161852857	1q32	"Rattus norvegicus olfactory receptor 140 (Olr140), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	ratchr1-161944866-161945813_ORF; Olr140	ratchr1-161944866-161945813_ORF; Olr140
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62666518-S	ILMN_57527	LOC363443	XM_343763.2	XM_343763.2		363443	62666518	XM_343763.2	LOC363443	XP_343764.1	ILMN_1354356	6220086	S	1475	GCAGGCTTTCACACATATACACTCAGATGGATCCTGTCTTGGCTCTGGAG				Xq12	"PREDICTED: Rattus norvegicus similar to NDP (LOC363443), mRNA."
Molecular function unclassified	Lipid, fatty acid and steroid metabolism -> Lipid metabolism;Developmental processes;Other metabolism	Rattus norvegicus	RefSeq	GI_62658298-S	ILMN_63565	LASS4_PREDICTED	XM_221796.4	XM_221796.4		304208	109494929	XM_221796.4	Lass4_predicted	XP_221796.4	ILMN_1356893	3850427	S	1662	CCTCACTGCCACATCAGGATTTATGTCCACTCTTGCCGGTATAGCACCAC	12	-	1257982-1258031	12p12	"PREDICTED: Rattus norvegicus longevity assurance homolog 4 (S. cerevisiae) (predicted) (Lass4_predicted), mRNA."
Transferase -> Methyltransferase	Protein metabolism and modification -> Protein modification -> Protein methylation	Rattus norvegicus	RefSeq	GI_62653320-S	ILMN_285800	PRMT4	NM_001030041.2	NM_001030041.2		363026	77539779	NM_001030041.2	Prmt4	NP_001025212.1	ILMN_1375134	5220180	S	2331	AGCACAGCCAGCTGGACCTCTCCTTCAACTACCAGGCCACATGGTCACCA	8	+	20694285-20694334	8q13	"Rattus norvegicus protein arginine N-methyltransferase 4 (Prmt4), transcript variant 1, mRNA."				Carm1	Carm1
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62658984-S	ILMN_59389	RGD1560213_PREDICTED	XM_573405.2	XM_573405.2		498189	109495998	XM_573405.2	RGD1560213_predicted	XP_573405.2	ILMN_1375086	520670	S	1734	AACGGGACCCAAAGTATGGTGAGAAGGAACCACAGCCCCGAGAACGTGCA	12	+	41370972-41371021	12q16	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1500001A10 (predicted) (RGD1560213_predicted), mRNA."
Ligase -> Ubiquitin-protein ligase	Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_62667315-S	ILMN_279585	RGD1566282_PREDICTED	XM_001054034.1	XM_001054034.1		315911	109469973	XM_001054034.1	RGD1566282_predicted	XP_001054034.1	ILMN_1356759	5900204	S	2588	GTTGGTGTTTGAAAAAGAATCACGGGAAGGGGGGATTCCAGGTGCCTTAC				Xq35	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA D330045A20 (predicted) (RGD1566282_predicted), mRNA."
Ligase -> Other ligase	Signal transduction -> Cell surface receptor mediated signal transduction -> Receptor protein tyrosine kinase signaling pathway	Rattus norvegicus	RefSeq	GI_62653570-S	ILMN_291557	RGD1561386_PREDICTED	XM_001066453.1	XM_001066453.1		500985	109484590	XM_001066453.1	RGD1561386_predicted	XP_001066453.1	ILMN_1355687	6110592	S	3102	GCCAGGCTCTTACTCAAGGAGCACCTAGGAAAGCAGTGGCTTCTTTTGGG				8q22	"PREDICTED: Rattus norvegicus similar to CBL E3 ubiquitin protein ligase (Signal transduction protein CBL) (predicted) (RGD1561386_predicted), mRNA."
Hydrolase -> Lipase	Lipid, fatty acid and steroid metabolism -> Fatty acid metabolism;Lipid, fatty acid and steroid metabolism -> Steroid metabolism -> Steroid hormone metabolism	Rattus norvegicus	RefSeq	GI_6981163-S	ILMN_296760	LIPE	NM_012859.1	NM_012859.1		25330	6981163	NM_012859.1	Lipe	NP_036991.1	ILMN_1352555	6520711	S	3419	CGGCACTAAAAGACCTCTTGCACCCTTCTGCGCGGGCTTCCGTGATGAGT	1	-	80664026-80664075	1q21	"Rattus norvegicus lipase, hormone sensitive (Lipe), mRNA."	"That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [pmid 15242332] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [pmid 17026959] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [pmid 15242332] [evidence ISS]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [pmid 7240206] [evidence EXP]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [pmid 6643478] [evidence EXP]; Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins [goid 5811] [pmid 10671541] [evidence EXP]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [pmid 10940339] [evidence EXP]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [pmid 10694408] [evidence EXP]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [pmid 10671541] [evidence EXP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [pmid 17026959] [evidence ISS]"	"The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth [goid 7565] [evidence IEP]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence TAS]; The chemical reactions and pathways resulting in the breakdown of triacylglycerol, any triester of glycerol [goid 19433] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of triacylglycerol, any triester of glycerol [goid 19433] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of triacylglycerol, any triester of glycerol [goid 19433] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; The chemical reactions and pathways resulting in the breakdown of diacylglycerol, a glycerol molecule substituted on the 1 and 2 hydroxyl groups with long chain fatty acyl residues [goid 46340] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of diacylglycerol, a glycerol molecule substituted on the 1 and 2 hydroxyl groups with long chain fatty acyl residues [goid 46340] [evidence ISS];  [goid 6361] [pmid 9582279] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]"	"Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a fatty acid anion [goid 4806] [evidence IEA]; Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a fatty acid anion [goid 4806] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Catalysis of the hydrolysis of any ester bond [goid 16788] [evidence IDA]; Catalysis of the reaction: H2O + acylglycerol = a fatty acid + glycerol [goid 47372] [evidence IDA]; Any activity that brings about termination of transcription by RNA polymerase I [goid 3716] [pmid 9582279] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 17026959] [evidence ISS]; Catalysis of the hydrolysis of a lipid or phospholipid [goid 16298] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reactions: diacylglycerol + H2O = monoacylglycerol + a carboxylate, triacylglycerol + H2O = diacylglycerol + a carboxylate, and monoacylglycerol + H2O = glycerol + a carboxylate [goid 33878] [evidence IEA]; Interacting selectively with an unprocessed ribosomal RNA transcript [goid 42134] [pmid 9582279] [evidence ISS]"	HSL	HSL
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62666930-S	ILMN_56705	RGD1565289_PREDICTED	XM_343793.3	XM_343793.3		363474	109510840	XM_343793.3	RGD1565289_predicted	XP_343794.3	ILMN_1375059	4610577	S	771	GGGGTTAGGTGCCTCTGTCTATTACCCACAACAAGCCATCACTATTGCCC	X	+	81856729-81856778	Xq31	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610008C08 (predicted) (RGD1565289_predicted), mRNA."
Transcription factor -> Other transcription factor;Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Apoptosis -> Inhibition of apoptosis;Cell cycle -> Cell cycle control;Cell proliferation and differentiation	Rattus norvegicus	RefSeq	GI_62646321-S	ILMN_270622	MYBL2_PREDICTED	XM_001070125.1	XM_001070125.1		296344	109471256	XM_001070125.1	Mybl2_predicted	XP_001070125.1	ILMN_1369009	240647	S	2117	GCCGGGTATCAAGGAGGATAACAGCCTGCTCAACCAGGGCTTCCTACAGG				3q42	"PREDICTED: Rattus norvegicus myeloblastosis oncogene-like 2 (predicted) (Mybl2_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62660057-S	ILMN_67268	LOC363325	XM_347125.2	XM_347125.2		363325	62660057	XM_347125.2	LOC363325	XP_347126.2	ILMN_1352056	730593	S	306	GGTTACATGTAGCACAGGGGCTAGGTTAATAAAGAAGTCAAAGAGGAAAG					"PREDICTED: Rattus norvegicus hypothetical LOC363325 (LOC363325), mRNA."
Isomerase -> Other isomerase	Protein metabolism and modification -> Protein modification -> Protein disulfide-isomerase reaction	Rattus norvegicus	RefSeq	GI_56605937-A	ILMN_279105	TXNDC4	NM_001008317.1	NM_001008317.1		298066	56605937	NM_001008317.1	Txndc4	NP_001008318.1	ILMN_1376313	5890050	S	1222	CCTGAGAGCTCCTTCCAGAAGCTGGCGCCCAGCGAATATAGGTATACTTT	5	-	64869675-64869724	5q22	"Rattus norvegicus thioredoxin domain containing 4 (endoplasmic reticulum) (Txndc4), mRNA."	"The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence IEA]; The volume enclosed by the membranes of the endoplasmic reticulum [goid 5788] [evidence ISS]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence IEA]; A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport [goid 5793] [evidence ISS]"	"The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence IEA]; The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure [goid 6457] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus [goid 6986] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus [goid 6986] [evidence ISS]; The chemical reactions and pathways involving glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 9100] [evidence IEA]; The chemical reactions and pathways involving glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 9100] [evidence ISS]; Any process that maintains the redox environment of a cell or compartment within a cell [goid 45454] [evidence IEA]"	Catalysis of the rearrangement of both intrachain and interchain disulfide bonds in proteins [goid 3756] [evidence IEA]; Catalysis of the rearrangement of both intrachain and interchain disulfide bonds in proteins [goid 3756] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	BWK4	BWK4
Transferase -> Other transferase	Carbohydrate metabolism -> Other polysaccharide metabolism;Protein metabolism and modification -> Protein modification;Sulfur metabolism;Signal transduction;Immunity and defense;Developmental processes	Rattus norvegicus	RefSeq	GI_62656232-S	ILMN_55473	LOC363618	XM_343911.2	XM_343911.2		363618	62656232	XM_343911.2	LOC363618	XP_343912.2	ILMN_1350969	3940070	S	1988	GACCGGCCGCGACTTCGGCTGGGATGGATAGCAGAAATAATTTAAAAGAA				10q24	"PREDICTED: Rattus norvegicus similar to heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 (LOC363618), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62655681-S	ILMN_281721	RGD1304969_PREDICTED	XM_001079029.1	XM_001079029.1		302931	109489696	XM_001079029.1	RGD1304969_predicted	XP_001079029.1	ILMN_1371236	2510441	S	834	TGTGGCCTATACGATCCGCAGCCAGGACACGGGCAAGCTGTTCATCACAG				10q12	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610015J01 (predicted) (RGD1304969_predicted), mRNA."
Select regulatory molecule;Ligase -> Other ligase	Protein metabolism and modification -> Proteolysis;Cell cycle -> Cell cycle control;Other metabolism	Rattus norvegicus	RefSeq	GI_62665104-S	ILMN_287530	ANAPC10_PREDICTED	XM_001070328.1	XM_001070328.1		361389	109508601	XM_001070328.1	Anapc10_predicted	XP_001070328.1	ILMN_1356552	5130487	S	1351	GCAGAGCGTTGTCAGCTGATACAGACTCACTCCTGCTCCGAGACAGACTG				19q11	"PREDICTED: Rattus norvegicus anaphase promoting complex subunit 10 (predicted) (Anapc10_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62650910-S	ILMN_277997	PLEKHH1_PREDICTED	XM_001080885.1	XM_001080885.1		314262	109479555	XM_001080885.1	Plekhh1_predicted	XP_001080885.1	ILMN_1358715	2680603	S	4999	GGGCAATGGTACTGTATTTGGGGCTTCTGCACTGATACTCAGGGAAGCTC				6q24	"PREDICTED: Rattus norvegicus pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 (predicted) (Plekhh1_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47576368-S	ILMN_297343	OLR1549	NM_001000052.1	NM_001000052.1		288196	47576368	NM_001000052.1	Olr1549	NP_001000052.1	ILMN_1361847	1940215	S	520	CACTTTTACTGTGACATCATGCCATTGCTCAAGATTTCCTGTACAGACTC	11	+	42189302-42189351	11q12	"Rattus norvegicus olfactory receptor 1549 (Olr1549), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1549; ratchr11-42246372-42247295_ORF	Olr1549; ratchr11-42246372-42247295_ORF
Transcription factor -> Zinc finger transcription factor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Developmental processes -> Ectoderm development -> Neurogenesis;Developmental processes -> Mesoderm development	Rattus norvegicus	RefSeq	GI_62663640-I	ILMN_60470	GLI3	XM_225411.3	XM_225411.3		140588	62663640	XM_225411.3	Gli3	XP_225411.3	ILMN_1375470	2480670	S	6163	AAAAGCCCCAAAATGAGCTTCAGATAACAGGCCCTCCATGGGCCCTCAGG				17q12.1	"PREDICTED: Rattus norvegicus GLI-Kruppel family member GLI3 (Gli3), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; A protein complex that possesses activity that prevents or downregulates transcription [goid 17053] [evidence IEA]; A protein complex that possesses activity that prevents or downregulates transcription [goid 17053] [evidence IDA]"	"The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence IEA]; The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord [goid 1656] [evidence IGI]; Branching of the ureteric bud [goid 1658] [evidence IEA]; Branching of the ureteric bud [goid 1658] [evidence IGI]; The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine [goid 1822] [evidence IGI]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened [goid 7224] [evidence TAS]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened [goid 7224] [evidence IEA]; The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened [goid 7224] [evidence IGI]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence TAS]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence IGI]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IGI]; The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord [goid 7417] [evidence IMP]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IMP]; The process by which the anatomical structures of the hindgut are generated and organized. Morphogenesis pertains to the creation of form [goid 7442] [evidence IEA]; The process by which the anatomical structures of the hindgut are generated and organized. Morphogenesis pertains to the creation of form [goid 7442] [evidence IGI]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IGI]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IGI]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IMP]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis [goid 9952] [evidence IMP]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence IMP]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence IEA]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence IMP]; The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis [goid 9954] [evidence IGI]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence IDA]; The process that regulates the coordinated growth and differentiation that establishes the non-random dorsal-ventral spatial arrangement of the spinal cord [goid 21513] [evidence IEA]; The process that regulates the coordinated growth and differentiation that establishes the non-random dorsal-ventral spatial arrangement of the spinal cord [goid 21513] [evidence IGI]; The process whose specific outcome is the progression of the telencephalon over time, from its formation to the mature structure. The telencephalon is the paired anteriolateral division of the prosencephalon plus the lamina terminalis from which the olfactory lobes, cerebral cortex, and subcortical nuclei are derived [goid 21537] [evidence IMP]; The process by which the anatomical structure of the optic nerve is generated and organized. Morphogenesis pertains to the creation of form. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain [goid 21631] [evidence IEA]; The process by which the anatomical structure of the optic nerve is generated and organized. Morphogenesis pertains to the creation of form. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain [goid 21631] [evidence IMP]; The series of molecular signals initiated by binding of a ligand to the transmembrane receptor smoothened in a precursor cell in the ventral spinal cord that contributes to the commitment of the precursor cell to an interneuron fate [goid 21775] [evidence IEA]; The series of molecular signals initiated by binding of a ligand to the transmembrane receptor smoothened in a precursor cell in the ventral spinal cord that contributes to the commitment of the precursor cell to an interneuron fate [goid 21775] [evidence IGI]; The series of molecular signals initiated by binding of a ligand to the transmembrane receptor smoothened in a precursor cell in the spinal cord that contributes to the process of a precursor cell becoming capable of differentiating autonomously into a motor neuron in an environment that is neutral with respect to the developmental pathway [goid 21776] [evidence IEA]; The series of molecular signals initiated by binding of a ligand to the transmembrane receptor smoothened in a precursor cell in the spinal cord that contributes to the process of a precursor cell becoming capable of differentiating autonomously into a motor neuron in an environment that is neutral with respect to the developmental pathway [goid 21776] [evidence IGI]; The formation of specific regional progenitor domains along the dorsal-ventral axis in the developing forebrain [goid 21798] [evidence IMP]; The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium [goid 21915] [evidence IEA]; The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium [goid 21915] [evidence IMP]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEA]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IGI]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IMP]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IEA]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IMP]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IGI]; The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping [goid 30326] [evidence IMP]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IMP]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IEA]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence IMP]; The process whose specific outcome is the progression of a tube over time, from its initial formation to a mature structure. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues including lung and trachea, kidney, the mammary gland, the vascular system and the gastrointestinal and urinary-genital tracts [goid 35295] [evidence IEA]; The process whose specific outcome is the progression of a tube over time, from its initial formation to a mature structure. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues including lung and trachea, kidney, the mammary gland, the vascular system and the gastrointestinal and urinary-genital tracts [goid 35295] [evidence IGI]; The series of events that restore integrity to a damaged tissue, following an injury [goid 42060] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of movement of proteins from the cytoplasm into the nucleus [goid 42307] [evidence IGI]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IEA]; The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel [goid 42475] [evidence IGI]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence IGI]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation [goid 45596] [evidence IGI]; The process by which the anatomical structures of the gut are generated and organized during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48558] [evidence IEA]; The process by which the anatomical structures of the gut are generated and organized during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48558] [evidence IMP]; The process whose specific outcome is the progression of the gut over time, from its formation to the mature structure during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus [goid 48566] [evidence IMP]; The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another [goid 48589] [evidence IEA]; The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another [goid 48589] [evidence IMP]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence IEA]; The process by which the anatomical structures of the eye are generated and organized. Morphogenesis pertains to the creation of form. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field [goid 48593] [evidence IMP]; The process by which anatomical structures are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants [goid 48598] [evidence IEA]; The process by which anatomical structures are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants [goid 48598] [evidence IMP]; The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48646] [evidence IEA]; The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48646] [evidence IGI]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence IEA]; The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron [goid 48663] [evidence IMP]; The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form [goid 48704] [evidence IGI]; The process by which the anatomical structures of branches in a tube are generated and organized. Morphogenesis pertains to the creation of form. A tube is a long hollow cylinder [goid 48754] [evidence IMP]; The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48856] [evidence IGI]"	"Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IEA]; Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase [goid 3682] [evidence IGI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Any transcription regulator activity that prevents or downregulates transcription [goid 16564] [evidence TAS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]"
Transferase -> Nucleotidyltransferase	Carbohydrate metabolism -> Monosaccharide metabolism	Rattus norvegicus	RefSeq	GI_61556906-S	ILMN_297625	GALT	NM_001013089.2	NM_001013089.2		298003	70778864	NM_001013089.2	Galt	NP_001013107.1	ILMN_1357759	5700403	S	1159	GAGGTACACTATTGCCTGACGCAGAAAGACAAGGAAACAGCAGCCACCGC	5	+	59188494-59188543	5q22	"Rattus norvegicus galactose-1-phosphate uridylyltransferase (Galt), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water [goid 5625] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]"	"The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose [goid 6012] [evidence ISS]; The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose [goid 6012] [evidence IDA]; The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose [goid 6012] [evidence IEA];  [goid 19691] [evidence IDA]"	"Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with the aldohexose galactose (galacto-hexose), a common constituent of many oligo- and polysaccharides [goid 5534] [evidence IC ]; Interacting selectively with the D- or L-enantiomer of glucose [goid 5536] [evidence IC ]; Catalysis of the reaction: UDP-glucose + alpha-D-galactose 1-phosphate = alpha-D-glucose 1-phosphate + UDP-galactose [goid 8108] [evidence ISS]; Catalysis of the reaction: UDP-glucose + alpha-D-galactose 1-phosphate = alpha-D-glucose 1-phosphate + UDP-galactose [goid 8108] [evidence IDA]; Catalysis of the reaction: UDP-glucose + alpha-D-galactose 1-phosphate = alpha-D-glucose 1-phosphate + UDP-galactose [goid 8108] [evidence IEA]; Catalysis of the reaction: UDP-glucose + alpha-D-galactose 1-phosphate = alpha-D-glucose 1-phosphate + UDP-galactose [goid 8108] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]"	MGC112778	MGC112778
Ligase -> Ubiquitin-protein ligase	Protein metabolism and modification -> Protein modification;Protein metabolism and modification -> Other protein metabolism;Cell cycle -> Cell cycle control	Rattus norvegicus	RefSeq	GI_20302122-S	ILMN_52079	FBXO6B	NM_138917.2	NM_138917.2		192351	78042586	NM_138917.2	Fbxo6b	NP_620272.2	ILMN_1359050	3780072	S	728	CTGGTATGGTCCCCGTGTCACCAACAGCAGCATCATCGTCAGCCACAGGA	5	-	165223108-165223157	5q36	"Rattus norvegicus F-box only protein 6b (Fbxo6b), mRNA."				Fbxo6; Fbg2	Fbxo6; Fbg2
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47576390-S	ILMN_293924	OLR1561	NM_001000048.1	NM_001000048.1		288186	47576390	NM_001000048.1	Olr1561	NP_001000048.1	ILMN_1364897	4200619	S	771	CACATATATTCGACCGAGTTCAGTCAACGAAGGAGATGAAGACATACCAG	11	+	42453440-42453489	11q12	"Rattus norvegicus olfactory receptor 1561 (Olr1561), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1561	Olr1561
		Rattus norvegicus	RefSeq	GI_62658604-S	ILMN_59220	LOC363892	XM_344090.2	XM_344090.2		363892	62658604	XM_344090.2	LOC363892	XP_344091.2	ILMN_1356387	5690286	S	1480	GTGCCTGAAGAGATTGGAGAAGCCTAAGACGGTGGTGAAAGGATGGCAGC					"PREDICTED: Rattus norvegicus similar to cell surface receptor FDFACT (LOC363892), mRNA."
Select regulatory molecule -> G-protein modulator -> Guanyl-nucleotide exchange factor	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62642055-S	ILMN_263572	LOC499337	XM_001056091.1	XM_001056091.1		499337	109459990	XM_001056091.1	LOC499337	XP_001056091.1	ILMN_1374172	6040593	S	6418	TGCGGTGAGGCCGTAGAGAAGAACAGGAGACTCATTACCGCAGAGCAGCG	1	+	228633011-228633060	1q51	"PREDICTED: Rattus norvegicus similar to dedicator of cytokinesis 8 (LOC499337), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62666799-S	ILMN_278727	LOC684606	XM_001071213.1	XM_001071213.1		684606	109511737	XM_001071213.1	LOC684606	XP_001071213.1	ILMN_1356583	2850068	S	678	AGATGGCAAACGTCCTGTGGATCTGGTGCCTCTGGAGAGTCCTGTGATTG					"PREDICTED: Rattus norvegicus similar to ankyrin repeat and SOCS box-containing protein 9 (LOC684606), mRNA."
Molecular function unclassified	Intracellular protein traffic -> General vesicle transport	Rattus norvegicus	RefSeq	GI_62666957-S	ILMN_265716	YIPF6	NM_001025747.1	NM_001025747.1		363476	71043719	NM_001025747.1	Yipf6	NP_001020918.1	ILMN_1366497	130438	S	333	GTAGAAGGGAAGAGGGATGGCGGAAGCCCAGAGTTTGCAGAAGTGTTCGT	X	+	86946295-86946344	Xq31	"Rattus norvegicus Yip1 domain family, member 6 (Yipf6), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"			MGC116126	MGC116126
Transcription factor -> Other transcription factor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Signal transduction -> Cell surface receptor mediated signal transduction -> Receptor protein serine/threonine kinase signaling pathway;Signal transduction -> Intracellular signaling cascade -> Other intracellular signaling cascade;Signal transduction -> Cell communication -> Ligand-mediated signaling;Developmental processes;Oncogenesis	Rattus norvegicus	RefSeq	GI_40538850-S	ILMN_274089	SMAD3	NM_013095.2	NM_013095.2		25631	40538850	NM_013095.2	Smad3	NP_037227.1	ILMN_1354074	5360673	S	4513	AGCGGACGCTGCCTCTGCCAAGCTCCCAAAGTTACACAGGTACAGGCAGA	8	-	67803995-67804044	8q24	"Rattus norvegicus SMAD family member 3 (Smad3), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IEA]; Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription [goid 5667] [evidence IMP]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [evidence ISS]; Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 43235] [evidence IEA]"	"Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence IEA]; The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts [goid 1707] [evidence ISS]; The process by which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation [goid 1836] [evidence IMP]; The process whose specific outcome is the progression of an osteoblast over time, from its formation to the mature structure. Osteoblast development does not include the steps involved in committing a cranial neural crest cell or an osteoprogenitor cell to an osteoblast fate. An osteoblast is a cell that gives rise to bone [goid 2076] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence ISS]; Upregulation of the activity of a caspase, any of a group of cysteine proteases involved in apoptosis [goid 6919] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IMP]; The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands [goid 7179] [evidence IMP]; The aggregation, arrangement and bonding together of a set of components to form a protein complex that contains SMAD proteins [goid 7183] [evidence ISS]; The aggregation, arrangement and bonding together of a set of components to form a protein complex that contains SMAD proteins [goid 7183] [evidence IPI]; The aggregation, arrangement and bonding together of a set of components to form a protein complex that contains SMAD proteins [goid 7183] [evidence IEA]; Any process that stops, prevents or reduces the rate or extent of cell proliferation [goid 8285] [evidence IDA]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence IMP]; The morphological and physiological alterations undergone by mitochondria during apoptosis [goid 8637] [evidence IMP]; Any process that increases the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10552] [evidence IDA]; Any process that increases the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10552] [evidence IMP]; Any process that decreases the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter [goid 10553] [evidence IDA]; Any process that increases the frequency, rate or extent of alkaline phosphatase activity, the catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an alkaline pH optimum [goid 10694] [evidence IDA]; Any process that modulates the frequency, rate or extent of striated muscle development [goid 16202] [evidence IEA]; Any process that modulates the frequency, rate or extent of striated muscle development [goid 16202] [evidence ISS]; Any process that modulates the frequency, rate or extent of activity of any TGF-beta receptor signaling pathway [goid 17015] [evidence IEA]; Any process that modulates the frequency, rate or extent of activity of any TGF-beta receptor signaling pathway [goid 17015] [evidence ISS]; Any process, either active or passive, by which a virus avoids or tolerates the effects of its host organism's defense(s). Host defenses may be induced by the presence of the virus or may be preformed (e.g. physical barriers). The host is defined as the larger of the organisms involved in a symbiotic interaction [goid 19049] [evidence ISS]; Any process, either active or passive, by which a virus avoids or tolerates the effects of its host organism's defense(s). Host defenses may be induced by the presence of the virus or may be preformed (e.g. physical barriers). The host is defined as the larger of the organisms involved in a symbiotic interaction [goid 19049] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell migration [goid 30335] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [evidence IDA]; Any process that activates or increases the frequency, rate, or extent of interleukin-1 beta production [goid 32731] [evidence IMP]; Any process that modulates the frequency, rate, or extent of production of transforming growth factor-beta2 [goid 32909] [evidence ISS]; Any process that modulates the frequency, rate, or extent of production of transforming growth factor-beta2 [goid 32909] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of production of transforming growth factor-beta3 [goid 32916] [evidence IMP]; The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific [goid 42110] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus [goid 42993] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus [goid 42993] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of osteoblast differentiation [goid 45668] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the mitotic cell cycle [goid 45930] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the mitotic cell cycle [goid 45930] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence ISS]; The process by which the anatomical structures of the paraxial mesoderm are generated and organized. Morphogenesis pertains to the creation of form [goid 48340] [evidence IEA]; The process by which the anatomical structures of the paraxial mesoderm are generated and organized. Morphogenesis pertains to the creation of form [goid 48340] [evidence ISS]; Any process that modulates the frequency, rate or extent of epithelial cell proliferation [goid 50678] [evidence IEA]; Any process that modulates the frequency, rate or extent of epithelial cell proliferation [goid 50678] [evidence ISS]; Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus [goid 50776] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical [goid 50927] [evidence IDA]; Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule [goid 51098] [evidence IEA]; Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule [goid 51098] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the assembly of a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts [goid 51496] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of focal adhesion formation, the establishment and maturation of focal adhesions [goid 51894] [evidence IDA]; The conversion of a differentiated cell of one fate into a differentiated cell of another fate without first undergoing cell division or reversion to a more primitive or stem cell-like fate [goid 60290] [evidence IDA]"	"Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IDA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence IEA]; Interacting selectively with double-stranded DNA [goid 3690] [evidence ISS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IDA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence ISS];  [goid 3706] [evidence IMP]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%) [goid 5518] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IDA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS];  [goid 15460] [evidence ISS];  [goid 15460] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence ISS]; Any activity that stops or downregulates transcription of specific genes or sets of genes [goid 16566] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence ISS]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IDA]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence ISS]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence IPI]; Interacting selectively with a SMAD signaling protein [goid 46332] [evidence IEA]"	Madh3	Madh3
		Rattus norvegicus	RefSeq	GI_62659614-S	ILMN_59391	LOC364035	XM_573491.1	XM_573491.1		364035	62659614	XM_573491.1	LOC364035	XP_573491.1	ILMN_1357022	450014	S	388	GTCCTCCAAAGGAGCCCATGAAAGATGATCCGCAGGTCAGGCGACAAGGA					"PREDICTED: Rattus norvegicus similar to adenylate kinase 2 (LOC364035), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62653545	ILMN_288772	RGD1565368_PREDICTED	XM_001065101.1	XM_001065101.1		500983	109484557	XM_001065101.1	RGD1565368_predicted	XP_001065101.1	ILMN_1650736	3990332	S	940	GCAACTCCCATTCTTCCACCTTTGATGCTGGGGCTGGCATTGCTCTCAAC				8q22	"PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (predicted) (RGD1565368_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47777705-S	ILMN_268465	OLR903	NM_001001361.1	NM_001001361.1		288808	47777705	NM_001001361.1	Olr903	NP_001001361.1	ILMN_1374859	3130603	S	363	GGCCATCTGTAAACCTCTGCACTACATGACCATCATGAATAGCAGGGTGT	7	+	3530659-3530708	7q11	"Rattus norvegicus olfactory receptor 903 (Olr903), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr903	Olr903
Nucleic acid binding -> mRNA processing factor -> mRNA splicing factor	Nucleoside, nucleotide and nucleic acid metabolism -> Pre-mRNA processing -> mRNA splicing	Rattus norvegicus	RefSeq	GI_62662496-S	ILMN_281923	RGD1563937_PREDICTED	XM_001072488.1	XM_001072488.1		364539	109504049	XM_001072488.1	RGD1563937_predicted	XP_001072488.1	ILMN_1370844	6590075	S	923	CTCCCTGAGCCAGCTCTGTGCGTATGGGGACAGTGAGGACAGTGACAGCT				16p14	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2900016D05 (predicted) (RGD1563937_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62661400-S	ILMN_62795	LOC364335	XM_344359.2	XM_344359.2		364335	62661400	XM_344359.2	LOC364335	XP_344360.2	ILMN_1363218	5270091	S	367	AGGACTCAGGCACCTACTTCTGTGCTGCTTATGCACAGTGCTCCCAGTAA				15p14	"PREDICTED: Rattus norvegicus similar to T cell receptor, variable region (LOC364335), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Pheromone response	Rattus norvegicus	RefSeq	GI_57164068-S	ILMN_278731	V1RC28	NM_001009513.1	NM_001009513.1		494233	57164068	NM_001009513.1	V1rc28	NP_001009513.1	ILMN_1364241	2640520	S	755	TCCTGTTAGGGGTCTATGACCCAGTCGTCCTGACTGTTCAGATATCTATG	4	+	87100155-87100204	4q24	"Rattus norvegicus vomeronasal 1 receptor, C28 (V1rc28), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]
Transcription factor -> Homeobox transcription factor;Nucleic acid binding -> Other DNA-binding protein	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Developmental processes -> Ectoderm development	Rattus norvegicus	RefSeq	GI_62649506-S	ILMN_55279	DMBX1_PREDICTED	XM_233404.4	XM_233404.4		313512	109475263	XM_233404.4	Dmbx1_predicted	XP_233404.4	ILMN_1367307	6110487	S	903	CTACCTAGGGGTCAACATGGCCCCACTGAGCTCCCTACACTGTCAGTCCT	5	-	136180460-136180509	5q36	"PREDICTED: Rattus norvegicus diencephalon/mesencephalon homeobox 1 (predicted) (Dmbx1_predicted), mRNA."
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Signal transduction -> Intracellular signaling cascade -> Other intracellular signaling cascade;Neuronal activities -> Other neuronal activity;Muscle contraction	Rattus norvegicus	RefSeq	GI_62642282-S	ILMN_52090	PRKG1_MAPPED	XM_219805.4	XM_219805.4		54286	109460002	XM_219805.4	Prkg1_mapped	XP_219805.4	ILMN_1366129	2320017	S	691	CCCGGGAAAGTGTTCGGGGAGCTGGCTATTCTTTACAACTGTACCCGGAC	1	-	235299240-235299289	1q52	"PREDICTED: Rattus norvegicus protein kinase, cGMP-dependent, type 1 (mapped) (Prkg1_mapped), mRNA."
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Signal transduction -> Intracellular signaling cascade -> Other intracellular signaling cascade;Neuronal activities -> Other neuronal activity;Muscle contraction	Rattus norvegicus	RefSeq	GI_62642170-S	ILMN_52090	PRKG1_MAPPED	XM_219805.4	XM_219805.4		54286	109460002	XM_219805.4	Prkg1_mapped	XP_219805.4	ILMN_1372653	5890097	S	2297	CTGCCAGCAAACCTGAGGGAAAGAGAGAAGATGAGTGCTCGGGGTCACCA	1	-	234420488-234420537	1q52	"PREDICTED: Rattus norvegicus protein kinase, cGMP-dependent, type 1 (mapped) (Prkg1_mapped), mRNA."
Isomerase -> Other isomerase	Protein metabolism and modification -> Protein folding;Intracellular protein traffic -> Nuclear transport;Immunity and defense	Rattus norvegicus	RefSeq	GI_62642871-S	ILMN_277450	PPWD1_PREDICTED	XM_001064235.1	XM_001064235.1		294711	109465884	XM_001064235.1	Ppwd1_predicted	XP_001064235.1	ILMN_1353828	3170242	S	2162	CTGTGTTTGGCCGAGTGACTAAAGGAATGGAGGTGGTGCAGAGGATTTCC				2q13	"PREDICTED: Rattus norvegicus peptidylprolyl isomerase domain and WD repeat containing 1 (predicted), transcript variant 2 (Ppwd1_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_28212267-S	ILMN_68416	YRDC	NM_175604.2	NM_175604.2		319113	76781473	NM_175604.2	Yrdc	NP_783194.2	ILMN_1355382	5390010	S	454	AGGACCTGTGACCCTGGTGATGGAACGCTCAGAGGAGCTCAACAAAGACC	5	+	144184550-144184599	5q36	"Rattus norvegicus yrdC domain containing (E.coli) (Yrdc), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"	"Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 51051] [evidence IEA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC124843	MGC124843
		Rattus norvegicus	RefSeq	GI_62644225-S	ILMN_65407	LOC362026	XM_342327.2	XM_342327.2		362026	62644225	XM_342327.2	LOC362026	XP_342328.2	ILMN_1361582	1780465	S	133	GTCTGGAGGGTCCTCAGAAAAATGGACATTGAACTGCCTGAGGATCCAGC					"PREDICTED: Rattus norvegicus similar to LRRG00116 (LOC362026), mRNA."
Transfer/carrier protein -> Other transfer/carrier protein	Nucleoside, nucleotide and nucleic acid metabolism -> Chromatin packaging and remodeling;Intracellular protein traffic -> Nuclear transport	Rattus norvegicus	RefSeq	GI_53850613-S	ILMN_291891	NASP	NM_001005543.1	NM_001005543.1		298441	53850613	NM_001005543.1	Nasp	NP_001005543.1	ILMN_1359661	5690086	S	2403	CATGGAGGCAGAGGCTGAGAATCAGGCTGAGAGCCAGACAACAGCAGAAG	5	-	136884855-136884892:136885190-136885201	5q36	"Rattus norvegicus nuclear autoantigenic sperm protein (histone-binding) (Nasp), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm [goid 1824] [evidence ISS]; The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm [goid 1824] [evidence ISS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]; The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA [goid 6260] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence ISS]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The replacement, within chromatin, of resident histones or histone subunits with alternative, sometimes variant, histones or subunits [goid 43486] [evidence ISS]"	"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a histone, any of a group of water-soluble proteins found in association with the DNA of plant and animal chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity [goid 42393] [evidence ISS]; Interacting selectively with Hsp90 proteins, any of a group of heat shock proteins around 90kDa in size [goid 51879] [evidence ISS]; Interacting selectively with Hsp90 proteins, any of a group of heat shock proteins around 90kDa in size [goid 51879] [evidence ISS]"	MGC93869	MGC93869
		Rattus norvegicus	RefSeq	GI_62718778-S	ILMN_62055	LOC501472	XM_580197.1	XM_580197.1		501472	62718778	XM_580197.1	LOC501472	XP_580197.1	ILMN_1349326	380059	S	54	CGGGGTGGTACAAACTTTTAAAAGTCCCAGGCAGTGGGCAGACCACGCTC					"PREDICTED: Rattus norvegicus LOC501472 (LOC501472), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62653760-S	ILMN_266475	RGD1311874_PREDICTED	XM_001072768.1	XM_001072768.1		300751	109484780	XM_001072768.1	RGD1311874_predicted	XP_001072768.1	ILMN_1361339	5220603	S	479	TTCAGCAGAGCCCAGGCCCACGAGAGGCAGGTGAAAGCCAAGGGAAGGAT				8q24	"PREDICTED: Rattus norvegicus hypothetical LOC300751 (predicted) (RGD1311874_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62638658-S	ILMN_60500	LOC499052	XM_574332.1	XM_574332.1		499052	62638658	XM_574332.1	LOC499052	XP_574332.1	ILMN_1361961	2360025	S	537	CTGCCCTTCAGCCATGATGGACTTCAGGATCTAACCTGAGGACCCTACAC					"PREDICTED: Rattus norvegicus similar to kinesin family member 25 (LOC499052), mRNA."
Receptor -> Ligand-gated ion channel -> Glutamate receptor;Ion channel -> Ligand-gated ion channel -> Glutamate receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> Other receptor mediated signaling pathway;Signal transduction -> Cell communication;Transport -> Ion transport -> Cation transport;Neuronal activities -> Synaptic transmission -> Nerve-nerve synaptic transmission	Rattus norvegicus	RefSeq	GI_62655610-A	ILMN_290907	GRIN2A	NM_012573.2	NM_012573.2		24409	31377497	NM_012573.2	Grin2a	NP_036705.2	ILMN_1376686	110372	S	5509	GCCAGCAGCCATGTGTAATCTGTAAGAAGTCCCATGCTATCTGTGTGTCC	10	+	6005714-6005763	10q11	"Rattus norvegicus glutamate receptor, ionotropic, N-methyl D-aspartate 2A (Grin2a), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence ISS]; The post synaptic density is a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. It forms a disc that consists of a range of proteins with different functions, some of which contact the cytoplasmic domains of ion channels in the postsynaptic membrane. The proteins making up the disc include receptors, and structural proteins linked to the actin cytoskeleton. They also include signalling machinery, such as protein kinases and phosphatases [goid 14069] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence ISS]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence IDA]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence ISS]; An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD [goid 17146] [evidence IDA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence ISS]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence ISS]; A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane [goid 42734] [evidence IDA]; A prolongation or process extending from a nerve cell, e.g. an axon or dendrite [goid 43005] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence TAS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence ISS]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]"	"Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence IMP]; Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. An action potential is a spike of membrane depolarization and repolarization that travels along the membrane of a cell [goid 1508] [evidence IMP]; An action or movement due to the application of a sudden unexpected stimulus [goid 1964] [evidence ISS]; An action or movement due to the application of a sudden unexpected stimulus [goid 1964] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence ISS]; The directed movement of calcium (Ca) ions into, out of, within or between cells [goid 6816] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IMP]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence ISS]; The acquisition and processing of information and/or the storage and retrieval of this information over time [goid 7611] [evidence ISS]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence ISS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence ISS]; The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task) [goid 7613] [evidence IDA]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence ISS]; Any process by which a protein is transported to, or maintained in, a specific location [goid 8104] [evidence IEA]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism [goid 9611] [evidence IEA]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence ISS]; Generation of cells within the nervous system [goid 22008] [evidence ISS]; Generation of cells within the nervous system [goid 22008] [evidence IEA]; Any process by which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain [goid 30431] [evidence ISS]; Any process by which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain [goid 30431] [evidence IEA]; Self-propelled movement of a cell or organism from one location to another along an axis [goid 33058] [evidence ISS]; Self-propelled movement of a cell or organism from one location to another along an axis [goid 33058] [evidence IEA]; The series of molecular signals generated as a consequence of glutamate binding to a cell surface receptor, followed by the movement of ions through a channel in the receptor complex [goid 35235] [evidence IDA]; Self-propelled movement of a cell or organism from one location to another [goid 40011] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 42177] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 42177] [evidence IEA]; Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane [goid 42391] [evidence ISS]; The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42417] [evidence ISS]; The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline [goid 42417] [evidence IEA]; The chemical reactions and pathways involving serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties [goid 42428] [evidence ISS]; The chemical reactions and pathways involving serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties [goid 42428] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of cell death by apoptosis [goid 43065] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus [goid 45471] [evidence IEA]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence ISS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence IEA]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence IMP]; A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers [goid 48169] [evidence IMP]; Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism [goid 48511] [evidence IDA]; The series of events involved in the perception of pain in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal [goid 50966] [evidence ISS]; Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 51930] [evidence ISS]; Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal [goid 51930] [evidence IEA]; Any process that modulates the establishment or extent of the postsynaptic membrane potential, which is generated by changes in the membrane potential of the post synaptic neuron that receives information at a synapse. The presynaptic neuron releases neurotransmitters into the synaptic cleft which bind to receptors on the postsynaptic neuron. After being bound by the neurotransmitters, these receptors can open or close an ion channel, allowing ions to enter or leave the cell and therefore altering the membrane potential of the postsynaptic neuron [goid 60078] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence ISS]; Any process that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP) which is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential [goid 60079] [evidence IEA]"	"Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with glutamate to initiate a change in cell activity through the regulation of ion channels [goid 4970] [evidence IDA];  [goid 4972] [evidence IDA];  [goid 4972] [evidence IDA];  [goid 4972] [evidence ISS];  [goid 4972] [evidence IEA];  [goid 4972] [evidence IMP]; Catalysis of the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts [goid 5234] [evidence IMP]; Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient [goid 5261] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence ISS]; Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5262] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with glutamate, the anion of 2-aminopentanedioic acid [goid 16595] [evidence IMP]; Catalysis of the transmembrane transfer of a cation by a voltage-gated channel. A cation is a positively charged ion [goid 22843] [evidence IMP]; Interacting selectively with a glutamate receptor [goid 35254] [evidence IEA]; Interacting selectively with a neurotransmitter, any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 42165] [evidence IDA]; Interacting selectively with a cell adhesion molecule [goid 50839] [evidence IPI]; Interacting selectively with a cell adhesion molecule [goid 50839] [evidence IPI]; Interacting selectively with a cell adhesion molecule [goid 50839] [evidence IPI]"	NMDAR2A; NR2A	NMDAR2A; NR2A
		Rattus norvegicus	RefSeq	GI_62647533	ILMN_48373	LOC502803	XM_578302.1	XM_578302.1		502803	62647533	XM_578302.1	LOC502803	XP_578302.1	ILMN_1649752	1580377	S	134	CCAGTCAGAACATCAATGGTTGGTTAGCCTGGTACCAGCAGAAACCAGGG					"PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain (LOC502803), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62646851-S	ILMN_61605	RPA3_PREDICTED	XM_216097.4	XM_216097.4		296883	109471732	XM_216097.4	Rpa3_predicted	XP_216097.1	ILMN_1366297	4070093	S	13	CCTGCGGGTTGTGAGTTTTGGCGGCAGAATCATGGTGGACATAATGGAAC	4	-	33307315-33307334:33307335-33307364	4q21	"PREDICTED: Rattus norvegicus replication protein A3 (predicted) (Rpa3_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62644191-S	ILMN_63810	RGD1564454_PREDICTED	XM_575014.2	XM_575014.2		499690	109465448	XM_575014.2	RGD1564454_predicted	XP_575014.2	ILMN_1353110	6200121	S	838	CTGAAAACTGCGGCTCACGGGGGAATGATACAGGCTTTGTTCAGACTTCC	2	-	204125517-204125566	2q34	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2010200O16 (predicted) (RGD1564454_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62664042-S	ILMN_52828	CABLES1_PREDICTED	XM_226165.4	XM_226165.4		307585	109506305	XM_226165.4	Cables1_predicted	XP_226165.4	ILMN_1356148	6130603	S	1306	AAGAGAGAGATGCGGAAGCTCGCCCAGGAGGACTGTGGTTTTGAGGAGCC	18	+	3525500-3525549	18p13	"PREDICTED: Rattus norvegicus Cdk5 and Abl enzyme substrate 1 (predicted) (Cables1_predicted), mRNA."
Miscellaneous function	Signal transduction -> Cell communication -> Extracellular matrix protein-mediated signaling;Miscellaneous	Rattus norvegicus	RefSeq	GI_62650721-S	ILMN_266154	LOC368070	XM_001079732.1	XM_001079732.1		368070	109479425	XM_001079732.1	LOC368070	XP_001079732.1	ILMN_1349327	5890184	S	2999	GTGTGTCATCTGTTAATAGTTATCACCTCCTGGGTGGTTAGGGGGTGGGT				6q23	"PREDICTED: Rattus norvegicus similar to Pinin (LOC368070), mRNA."
Hydrolase -> Other hydrolase;Protease -> Serine protease	Non-vertebrate process	Rattus norvegicus	RefSeq	GI_62653849-S	ILMN_50540	LACTB_PREDICTED	XM_217181.4	XM_217181.4		300803	109483667	XM_217181.4	Lactb_predicted	XP_217181.2	ILMN_1356536	3940021	S	1723	TAAAGACAGAGCCGACTAATCCTAACCGCGGCACAGGTCCACAGTGAGCC	8	-	71267078-71267109:71267110-71267127	8q24	"PREDICTED: Rattus norvegicus lactamase, beta (predicted) (Lactb_predicted), mRNA."
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation	Rattus norvegicus	RefSeq	GI_62638612-S	ILMN_58282	LOC502241	XM_577701.1	XM_577701.1		502241	62638612	XM_577701.1	LOC502241	XP_577701.1	ILMN_1366957	1230687	S	1016	TGATGGCTGCACAGCCCAGGCACAGCAGGTGAGTCCCATTGCAGCCCCAT				1q12	"PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502241), mRNA."
Cell adhesion molecule -> Cadherin	Signal transduction -> Cell communication -> Cell adhesion-mediated signaling;Cell adhesion	Rattus norvegicus	RefSeq	GI_62664302-S	ILMN_56160	PCDHGA6_PREDICTED	XM_577612.2	XM_577612.2		502156	109506509	XM_577612.2	Pcdhga6_predicted	XP_577612.2	ILMN_1366796	50136	S	2335	CTTCTTTGCTTTTGTTACGGGGCTGCTGGTGCTCAGGCTGTGGCACTGGC	18	+	30619106-30619155	18p11	"PREDICTED: Rattus norvegicus protocadherin gamma subfamily A, 6 (predicted) (Pcdhga6_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62646430-S	ILMN_62050	LOC499946	XM_580037.1	XM_580037.1		499946	62646430	XM_580037.1	LOC499946	XP_580037.1	ILMN_1361330	840273	S	345	GAAGGAGACAAAACCCTTCCTCCGTGCCAGTGGATCTCCTCAGCAGGACC					"PREDICTED: Rattus norvegicus LOC499946 (LOC499946), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_57527906-S	ILMN_280823	SRGN	NM_020074.2	NM_020074.2		56782	57527906	NM_020074.2	Srgn	NP_064459.1	ILMN_1360748	6650026	S	973	GGTGAGGGGTATATATTCTGTTATGGCCATTGGATATGACGGGGAAGACC	20	-	29746995-29747044	20q11	"Rattus norvegicus serglycin (Srgn), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]; Coarse, bluish-black staining cytoplasmic granules, bounded by a plasma membrane and found in mast cells and basophils. Contents include histamine, heparin, chondroitin sulfates, chymase and tryptase [goid 42629] [evidence ISS]; Coarse, bluish-black staining cytoplasmic granules, bounded by a plasma membrane and found in mast cells and basophils. Contents include histamine, heparin, chondroitin sulfates, chymase and tryptase [goid 42629] [evidence ISS]"	"The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance [goid 1503] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of bone mineralization [goid 30502] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a secretory granule in a mast cell. A secretory granule is a small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion [goid 33364] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a secretory granule in a T cell. A secretory granule is a small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion [goid 33371] [evidence ISS]; A process by which a protease is maintained in a secretory granule in a mast cell and prevented from moving elsewhere [goid 33373] [evidence ISS]; A process by which the protease granyme B is maintained in a secretory granule in a T cell and prevented from moving elsewhere [goid 33382] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of cytokines from a cell or group of cells [goid 50710] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of cytokines from a cell or group of cells [goid 50710] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein during protein maturation, the process leading to the attainment of the full functional capacity of a protein [goid 51605] [evidence ISS]; The hydrolysis of a peptide bond or bonds within a protein during protein maturation, the process leading to the attainment of the full functional capacity of a protein [goid 51605] [evidence ISS]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]
Nucleic acid binding -> Ribosomal protein;Chaperone -> Other chaperones	Protein metabolism and modification -> Protein folding;Protein metabolism and modification -> Proteolysis;Immunity and defense -> Stress response	Rattus norvegicus	RefSeq	GI_62661740-S	ILMN_262408	RGD1566076_PREDICTED	XM_001072187.1	XM_001072187.1		498546	109502726	XM_001072187.1	RGD1566076_predicted	XP_001072187.1	ILMN_1358457	5270300	S	370	GCGGGTCTATAGGAAGCGAACAAGCCATGGGTGATAGAAAGGCGGTCCCC				15q11	"PREDICTED: Rattus norvegicus similar to Chromosome 13 open reading frame 21 (predicted) (RGD1566076_predicted), mRNA."
Signaling molecule -> Peptide hormone	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Signal transduction -> Cell communication -> Ligand-mediated signaling;Blood circulation and gas exchange -> Regulation of vasoconstriction, dilation;Cell proliferation and differentiation;Homeostasis	Rattus norvegicus	RefSeq	GI_6978790-S	ILMN_287065	EDN1	NM_012548.1	NM_012548.1		24323	6978790	NM_012548.1	Edn1	NP_036680.1	ILMN_1363231	2450095	S	1096	GCATCATCCAGAGAGCCAGGAGATTCCATAGCAGGGCGGAGTTTCTGTAG	17	-	28304130-28304179	17p12	"Rattus norvegicus endothelin 1 (Edn1), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]"	"The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence IEA]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence IEA]; The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]; The process by which endothelin modulates the force with which blood passes through the circulatory system. Endothelin is a hormone that is released by the endothelium, and it is a vasoconstrictor [goid 3100] [evidence ISS]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence IEA]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence ISS]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence IEA]; The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7205] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IDA]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IEA]; Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence IEA]; The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms [goid 7585] [evidence ISS]; The regulated release of a fluid by a cell or group of cells in a multicellular organism [goid 7589] [evidence ISS]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IMP]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence IEA]; The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure [goid 8217] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence TAS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence IEA]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; Any process that activates or increases the frequency or rate of heart contraction [goid 10460] [evidence ISS]; The process aimed at the progression of a neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell [goid 14032] [evidence IEA]; The process aimed at the progression of a neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell [goid 14032] [evidence ISS]; The process aimed at the progression of a neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell [goid 14032] [evidence ISS]; A series of reactions, mediated by the intracellular phosphoinositide 3-kinase (PI3K). PI3K cascades lie downstream of many cell surface receptor linked signaling pathways and regulate numerous cellular functions [goid 14065] [evidence IEA]; A series of reactions, mediated by the intracellular phosphoinositide 3-kinase (PI3K). PI3K cascades lie downstream of many cell surface receptor linked signaling pathways and regulate numerous cellular functions [goid 14065] [evidence ISS]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence IEA]; The directed movement of the hexose monosaccharide glucose into, out of, within or between cells [goid 15758] [evidence ISS]; Any process that modulates the frequency, rate or extent of reductions in the diameter of blood vessels [goid 19229] [evidence IEA]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence IEA]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence ISS]; The regulated release of a peptide hormone from secretory granules [goid 30072] [evidence IEA]; The regulated release of a peptide hormone from secretory granules [goid 30072] [evidence ISS]; The process of renal water excretion [goid 30146] [evidence IEA]; The process of renal water excretion [goid 30146] [evidence ISS]; The process of renal sodium excretion [goid 30147] [evidence IEA]; The process of renal sodium excretion [goid 30147] [evidence ISS]; The directed movement of nitric oxide, nitrogen monoxide, into, out of, within or between cells [goid 30185] [evidence IEA]; The directed movement of nitric oxide, nitrogen monoxide, into, out of, within or between cells [goid 30185] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30818] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 30818] [evidence ISS]; A G-protein coupled signaling pathway that results in the activation of phospholipase D, causing an increase in cellular levels of phosphatidic acid [goid 31583] [evidence IEA]; A G-protein coupled signaling pathway that results in the activation of phospholipase D, causing an increase in cellular levels of phosphatidic acid [goid 31583] [evidence ISS]; Any process resulting in the inhibition or termination of the activity of protein kinase C [goid 42313] [evidence IEA]; Any process resulting in the inhibition or termination of the activity of protein kinase C [goid 42313] [evidence ISS]; The process by which the anatomical structures of middle ear are generated and organized. Morphogenesis pertains to the creation of form. The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window) [goid 42474] [evidence IEA]; The process by which the anatomical structures of middle ear are generated and organized. Morphogenesis pertains to the creation of form. The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window) [goid 42474] [evidence ISS]; Any process involved in the generation of rhythmic, synchronous excitatory synaptic inputs in a neural circuit [goid 43179] [evidence IEA]; Any process involved in the generation of rhythmic, synchronous excitatory synaptic inputs in a neural circuit [goid 43179] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of MAP kinase activity [goid 43406] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of JUN kinase activity [goid 43507] [evidence ISS]; Any process that increases cell size [goid 45793] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of mitosis [goid 45840] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of mitosis [goid 45840] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46887] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46887] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46888] [evidence IDA]; A series of molecular signals in which a cell uses a water-soluble inositol phosphate to convert an extracellular signal into a response [goid 48016] [evidence ISS]; The process by which the anatomical structures of blood vessels are generated and organized. Morphogenesis pertains to the creation of form. The blood vessel is the vasculature carrying blood [goid 48514] [evidence IEA]; The process by which the anatomical structures of blood vessels are generated and organized. Morphogenesis pertains to the creation of form. The blood vessel is the vasculature carrying blood [goid 48514] [evidence ISS]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IEA]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence ISS]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence IEA]; The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate [goid 51216] [evidence ISS]; Any process that increases the concentration of calcium ions in the cytosol during the process of G-protein signaling coupled to IP3 second messenger [goid 51482] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol during the process of G-protein signaling coupled to IP3 second messenger [goid 51482] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the enzyme nitric-oxide synthase [goid 51771] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the enzyme nitric-oxide synthase [goid 51771] [evidence ISS]; The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential [goid 51899] [evidence IMP]"	"Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an endothelin A receptor [goid 31707] [evidence IMP]; Interacting selectively with an endothelin A receptor [goid 31707] [evidence IEA]; Interacting selectively with an endothelin A receptor [goid 31707] [evidence ISS]; Interacting selectively with an endothelin B receptor [goid 31708] [evidence IMP]; Interacting selectively with an endothelin B receptor [goid 31708] [evidence ISS]"	Et1	Et1
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_40018575-S	ILMN_293785	TOR1AIP2	NM_199100.1	NM_199100.1		304881	40018575	NM_199100.1	Tor1aip2	NP_954531.1	ILMN_1362870	6840605	S	2204	TACCACTGCTGTCCTGCAAGGACTCTAACCGGCCACCAGGGCCATGTTTG	13	+	71100605-71100654	13q21	"Rattus norvegicus torsin A interacting protein 2 (Tor1aip2), mRNA."	"The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC72610	MGC72610
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62653038-S	ILMN_54014	TROAP_PREDICTED	XM_238523.4	XM_238523.4		300219	109481289	XM_238523.4	Troap_predicted	XP_238523.4	ILMN_1353096	1230369	S	433	CTGGCTCAGAGAGTGCTAGTGCGTGAGAGAAAGGGAGGCACCCACATCCA	7	+	137854382-137854431	7q36	"PREDICTED: Rattus norvegicus trophinin associated protein (tastin) (predicted) (Troap_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62653040-S	ILMN_54014	TROAP_PREDICTED	XM_238523.4	XM_238523.4		300219	109481289	XM_238523.4	Troap_predicted	XP_238523.4	ILMN_1370037	3190037	S	1745	GGCAGCGCCTCAGAGCTTGTCTCACCACCATCCACTGTTTCCACGAGGCT	7	+	137859682-137859731	7q36	"PREDICTED: Rattus norvegicus trophinin associated protein (tastin) (predicted) (Troap_predicted), mRNA."
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_62664844-S	ILMN_64487	RGD1561919_PREDICTED	XM_226269.3	XM_226269.3		307665	109507768	XM_226269.3	RGD1561919_predicted	XP_226269.1	ILMN_1349471	4920368	S	59	GGTCCCCAAGAAGTTTCAGCACAGTCTGCGAGTCCTCGACACCAACGTCG	19	+	13615416-13615465	19p11	"PREDICTED: Rattus norvegicus similar to ribosomal protein S18 (predicted) (RGD1561919_predicted), mRNA."
Receptor -> Other receptor	Developmental processes -> Gametogenesis -> Oogenesis	Rattus norvegicus	RefSeq	GI_31343479-S	ILMN_268673	LDLR	NM_175762.2	NM_175762.2		300438	31343479	NM_175762.2	Ldlr	NP_786938.1	ILMN_1369382	5290601	S	2691	CTACCAGAAGACCACGGAGGACGAGATCCACATTTGCCGCAGCCAGGATG	8	+	20845897-20845946	8q13	"Rattus norvegicus low density lipoprotein receptor (Ldlr), mRNA."	"A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation [goid 5768] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; A small pit, depression, or invagination, such as any of the minute pits or incuppings of the cell membrane formed during pinocytosis, that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Such caveolae may be pinched off to form free vesicles within the cytoplasm [goid 5901] [evidence IDA]; An invagination of the cell membrane of many eukaryotic cells, concerned in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane. During endocytosis it is converted into a coated vesicle. The coat is of clathrin [goid 5905] [evidence IEA]; The lipid bilayer surrounding an endosome [goid 10008] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding a clathrin-coated endocytic vesicle [goid 30669] [evidence ISS]"	"The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence ISS]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 6869] [evidence IEA]; A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle [goid 6897] [evidence IEA]; The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus [goid 8202] [evidence IEA]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence ISS]; The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; Uptake of cholesterol into the blood by absorption from the small intestine [goid 30299] [evidence ISS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence ISS]; The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of, within or between cells [goid 30301] [evidence ISS]; The process by which a low-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded [goid 34383] [evidence ISS]; The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42157] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids [goid 42159] [evidence ISS]; Any process involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell [goid 42632] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]"	"Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a low-density lipoprotein to initiate a change in cell activity [goid 5041] [evidence TAS]; Combining with a low-density lipoprotein to initiate a change in cell activity [goid 5041] [evidence ISS]; Enables the directed movement of lipids into, out of, within or between cells [goid 5319] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with low-density lipoprotein, one of the classes of lipoproteins found in blood plasma in many animals (data normally relate to humans) [goid 30169] [evidence ISS]; Combining with a very-low-density lipoprotein to initiate a change in cell activity [goid 30229] [evidence ISS]"	LDLRA	LDLRA
		Rattus norvegicus	RefSeq	GI_62718570-S	ILMN_270129	LOC367582	XR_009491.1	XR_009491.1		367582	109519114	XR_009491.1	LOC367582		ILMN_1368115	3120687	S	735	TTCCTCAAGGGAAAGACGCCCATCTCGCAAGTGCCATGGTTGGCCGAGCA					"PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2 (SPIN-2) (LOC367582), mRNA."
Cell adhesion molecule -> Cadherin	Signal transduction -> Cell communication -> Cell adhesion-mediated signaling;Cell adhesion	Rattus norvegicus	RefSeq	GI_40789240-S	ILMN_275087	PCDHA3	NM_053941.1	NM_053941.1		116780	40789240	NM_053941.1	Pcdha3	NP_446393.1	ILMN_2040582	2450612	S	1884	ACGTGTCCTGGATGAAACAGATGCCCCGCGACAGCGCCTATTAGTGTTGG	18	+	29678798-29678847	18p11	"Rattus norvegicus protocadherin alpha 3 (Pcdha3), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [evidence NAS]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]
		Rattus norvegicus	RefSeq	GI_62661972-S	ILMN_48895	LOC364409	XM_344425.2	XM_344425.2		364409	62661972	XM_344425.2	LOC364409	XP_344426.2	ILMN_1358858	3130292	S	1160	AACCTCGGTGCTGAGCATCTGTGGGCAGCAGTGGAAGGTAGGACACTGTC				15p12	"PREDICTED: Rattus norvegicus similar to ribosomal protein L36 (LOC364409), mRNA."
		Rattus norvegicus	RefSeq	GI_62640997-S	ILMN_64606	LOC497735	XM_579514.1	XM_579514.1		497735	62640997	XM_579514.1	LOC497735	XP_579514.1	ILMN_1358272	670309	S	951	CGCTGCAACTTCAATTACCGACGCAGACGCCCAGAGAACCCTAAACCACA				1q35	"PREDICTED: Rattus norvegicus similar to nuclease sensitive element binding protein 1 (LOC497735), mRNA."
Protease -> Metalloprotease	Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_62646392-S	ILMN_278136	LOC686212	XM_001072110.1	XM_001072110.1		686212	109471346	XM_001072110.1	LOC686212	XP_001072110.1	ILMN_1361977	5860603	S	870	CATACTGGGACACCACCATCCTTGGCTCACTGTTCTCAGGGGCTTCGTGT					"PREDICTED: Rattus norvegicus similar to TP53-regulating kinase (p53-related protein kinase) (Nori-2), transcript variant 2 (LOC686212), mRNA."
Miscellaneous function -> Structural protein	Intracellular protein traffic -> Nuclear transport	Rattus norvegicus	RefSeq	GI_16758423-S	ILMN_263960	POM121	NM_053622.1	NM_053622.1		113975	16758423	NM_053622.1	Pom121	NP_446074.1	ILMN_1365360	3120673	S	5139	GCAGGGGTTAGGCTGGGTTGTATGGAACTGGAGAAGAGCTGGACCTCAAG	12	+	22448367-22448416	12q12	"Rattus norvegicus nuclear pore membrane protein 121 (Pom121), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IDA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space [goid 31965] [evidence IEA]"	"A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the nuclear pore [goid 6999] [evidence IPI]; The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells [goid 51028] [evidence IEA]; The directed movement of proteins in a cell, from one side of a membrane to another [goid 65002] [evidence IEA]"	The action of a molecule that contributes to the structural integrity of the nuclear pore complex [goid 17056] [evidence IPI]
Transfer/carrier protein -> Other transfer/carrier protein	Intracellular protein traffic -> Other intracellular protein traffic	Rattus norvegicus	RefSeq	GI_62655943-S	ILMN_263018	RGD1562576_PREDICTED	XM_001064524.1	XM_001064524.1		303029	109490484	XM_001064524.1	RGD1562576_predicted	XP_001064524.1	ILMN_1360041	4670601	S	3952	CCATTTAACCTGAAGAAAAGCCGGAGGCGGCAAGTTGTGTTTGGAGGCGG				10q12	"PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1562576_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62664981-S	ILMN_48411	LOC498926	XM_579886.1	XM_579886.1		498926	62664981	XM_579886.1	LOC498926	XP_579886.1	ILMN_1368611	4780301	S	907	CCTTAAGGAGGCAGGTTCTCCACAACAGTGCATGCTGGGTTCCAGCCTGG					"PREDICTED: Rattus norvegicus LOC498926 (LOC498926), mRNA."
		Rattus norvegicus	RefSeq	GI_62661398	ILMN_62704	LOC498506	XM_573769.1	XM_573769.1		498506	62661398	XM_573769.1	LOC498506	XP_573769.1	ILMN_1650320	1450451	S	90	CAGTCTCACAGAGGGGTCACCTGTGGTGCTGAACTGTACCTTTCAGACTG				15p14	"PREDICTED: Rattus norvegicus similar to variable region-alpha 4 (LOC498506), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62655307-S	ILMN_56131	RGD1310683_PREDICTED	XM_237211.4	XM_237211.4		316452	109486204	XM_237211.4	RGD1310683_predicted	XP_237211.4	ILMN_1348971	6550369	S	609	GGGAGCCATTCTTCTTGCCTCCAAGGTTTGGGATGATCAGGCTGTATGGA	9	+	63370024-63370073	9q32	"PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ40432 (predicted) (RGD1310683_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62648922-S	ILMN_278151	FRMPD1_PREDICTED	XM_001071316.1	XM_001071316.1		313244	109476424	XM_001071316.1	Frmpd1_predicted	XP_001071316.1	ILMN_1349331	1190110	S	4539	TTCCACCCGGCACAGGGAAGTGGCCGGGAACCTGAGGGACGTGGTATATA				5q22	"PREDICTED: Rattus norvegicus FERM and PDZ domain containing 1 (predicted) (Frmpd1_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_50845393-S	ILMN_301177	LY6G5C	NM_198739.2	NM_198739.2		294245	50845393	NM_198739.2	Ly6g5c	NP_942034.2	ILMN_1358791	5670707	S	324	GAGCAGATGGTGGATTGCTCCTATACTCGGGCTTCCCCTGTGTTCGGCTT	20	-	3773489-3773538	20p12	"Rattus norvegicus lymphocyte antigen 6 complex, locus G5C (Ly6g5c), mRNA."	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]			re8	re8
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Signal transduction -> Intracellular signaling cascade -> Other intracellular signaling cascade;Apoptosis -> Inhibition of apoptosis;Homeostasis -> Other homeostasis activities	Rattus norvegicus	RefSeq	GI_9507092-S	ILMN_291069	SGK	NM_019232.1	NM_019232.1		29517	9507092	NM_019232.1	Sgk	NP_062105.1	ILMN_1349269	4200156	S	2107	GGGTTTTTATGGACCAATGCCCCAGTTGTCAGTCAGAGCCGTTGGTGTTC	1	-	23501544-23501593	1p12	"Rattus norvegicus serum/glucocorticoid regulated kinase (Sgk), mRNA."
Signaling molecule -> Other signaling molecule;Signaling molecule -> Membrane-bound signaling molecule	Signal transduction -> Cell surface receptor mediated signal transduction -> Receptor protein tyrosine kinase signaling pathway;Signal transduction -> Cell surface receptor mediated signal transduction -> Other receptor mediated signaling pathway;Developmental processes -> Ectoderm development -> Neurogenesis;Developmental processes -> Mesoderm development -> Angiogenesis;Developmental processes -> Mesoderm development -> Heart development	Rattus norvegicus	RefSeq	GI_62646702-S	ILMN_54435	SEMA3C_PREDICTED	XM_231381.4	XM_231381.4		296787	109471622	XM_231381.4	Sema3c_predicted	XP_231381.4	ILMN_1354972	1850300	S	2398	GGGGGAGGAGCCACAGAAGATGAGAGGGGACTATGGCAAACTAAAGGCGC	4	-	13742209-13742258	4q11	"PREDICTED: Rattus norvegicus sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C (predicted) (Sema3c_predicted), mRNA."
Protease -> Metalloprotease	Protein metabolism and modification -> Proteolysis;Developmental processes;Cell proliferation and differentiation	Rattus norvegicus	RefSeq	GI_62659564-S	ILMN_265420	LOC680069	XM_001054790.1	XM_001054790.1		680069	109498062	XM_001054790.1	LOC680069	XP_001054790.1	ILMN_1363354	4540176	S	1929	CTGCTGCGATCCTGAAGTGACTGATGTCCGAAAGACTTGCTTTGACCCTG	13	-	74127071-74127120	13q22	"PREDICTED: Rattus norvegicus similar to Pappalysin-2 precursor (Pregnancy-associated plasma protein-A2) (PAPP-A2) (Pregnancy-associated plasma protein-E1) (PAPP-E), transcript variant 1 (LOC680069), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"	"The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]"	"Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	Rn.16408	ILMN_288559	CDCA7	NM_001025693.1	NM_001025693.1		311742	71043615	NM_001025693.1	Cdca7	NP_001020864.1	ILMN_1530501	5900450	S	2248	AATCCTTCAGTGTAAATACAGCCTTTTGCTCTGTAATGCTTTTATACAAA	3	+	54959044-54959093	3q22	"Rattus norvegicus cell division cycle associated 7 (Cdca7), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]"		MGC112656	MGC112656
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62645238-S	ILMN_288559	CDCA7	NM_001025693.1	NM_001025693.1		311742	71043615	NM_001025693.1	Cdca7	NP_001020864.1	ILMN_1369207	6200180	S	1548	CGCAACGGTTGTGATGACTTGCCGAGAGCAGCCCTTTAACTTGCTTACCC	3	+	54958344-54958393	3q22	"Rattus norvegicus cell division cycle associated 7 (Cdca7), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]"		MGC112656	MGC112656
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62639124-S	ILMN_269357	RGD1562312_PREDICTED	XM_001067678.1	XM_001067678.1		499092	109461352	XM_001067678.1	RGD1562312_predicted	XP_001067678.1	ILMN_1354519	50050	S	504	GATGTGGACCAACACTGCCGCGGATGACAAGCAGCCCTATGGGAAGATGG					"PREDICTED: Rattus norvegicus similar to High mobility group protein 1 (HMG-1) (predicted) (RGD1562312_predicted), mRNA."
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation	Rattus norvegicus	RefSeq	GI_62638614-S	ILMN_58374	LOC365117	XM_344821.2	XM_344821.2		365117	62638614	XM_344821.2	LOC365117	XP_344822.2	ILMN_1368782	5690278	S	128	TCAAACGTCCCGTGGGAAAATCCTCTGTCAAGGGCAGGTGATGCCTCTTG				1q12	"PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC365117), mRNA."
Miscellaneous function -> Other miscellaneous function protein	Signal transduction -> Cell surface receptor mediated signal transduction	Rattus norvegicus	RefSeq	GI_62656664-S	ILMN_62244	NLE1_PREDICTED	XM_220770.4	XM_220770.4		303372	109488651	XM_220770.4	Nle1_predicted	XP_220770.3	ILMN_1373196	2850594	S	1499	ACTCAGGCTCTGCCCACTCTGCCAGTAACCAAGGAGACCTGCCCAGAACA	10	-	71117304-71117353	10q26	"PREDICTED: Rattus norvegicus notchless homolog 1 (Drosophila) (predicted) (Nle1_predicted), mRNA."
	Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_54114996-S	ILMN_271597	SORBS3	NM_001005762.1	NM_001005762.1		282843	54114996	NM_001005762.1	Sorbs3	NP_001005762.1	ILMN_1372136	5340176	S	2360	CATGGCAGTATGGAGCCAACGAGGATCGGGTGGGGAGCAGTAGCACTATG	15	-	50580206-50580255	15p11	"Rattus norvegicus sorbin and SH3 domain containing 3 (Sorbs3), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence IEA]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]; Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]"	"Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter [goid 122] [evidence ISS]; The attachment of a cell to the underlying substrate via adhesion molecules [goid 31589] [evidence IEA]; The attachment of a cell to the underlying substrate via adhesion molecules [goid 31589] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade [goid 43410] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the assembly of a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts [goid 51496] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the assembly of a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts [goid 51496] [evidence ISS]"	"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with vinculin, a protein found in muscle, fibroblasts, and epithelial cells that binds actin and appears to mediate attachment of actin filaments to integral proteins of the plasma membrane [goid 17166] [evidence IEA]; Interacting selectively with vinculin, a protein found in muscle, fibroblasts, and epithelial cells that binds actin and appears to mediate attachment of actin filaments to integral proteins of the plasma membrane [goid 17166] [evidence ISS]"	Sh3d4; MGC94509	Sh3d4; MGC94509
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Pheromone response	Rattus norvegicus	RefSeq	GI_57114225-S	ILMN_279866	V1RA2	NM_001008915.1	NM_001008915.1		494265	57114225	NM_001008915.1	V1ra2	NP_001008915.1	ILMN_1375180	3440176	S	876	CGTGAGCCATATCTATGCCACAGTCAGCCCTTTTGTGTTTATGAGCAATG	4	-	123949069-123949118	4q34	"Rattus norvegicus vomeronasal 1 receptor, A2 (V1ra2), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus [goid 19236] [evidence IEA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]
		Rattus norvegicus	RefSeq	GI_62642352-S	ILMN_60142	LOC365463	XM_577867.1	XM_577867.1		365463	62642352	XM_577867.1	LOC365463	XP_577867.1	ILMN_1367763	460670	S	0	ATGACCAAGTCCAACCACTGCTGCCAAGAAGATGTGTGGCGGGCCATCTG					"PREDICTED: Rattus norvegicus similar to Cystatin B (Liver thiol proteinase inhibitor) (Stefin B) (Cystatin beta) (LOC365463), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62642836-S	ILMN_63445	RGD1561673_PREDICTED	XM_574843.2	XM_574843.2		499518	109464290	XM_574843.2	RGD1561673_predicted	XP_574843.2	ILMN_1364886	6020333	S	2218	CCTCAAGCTGACTTCTGGTGGGCAAGTGGGCATGTGTGCGAGAACCTGTG	2	+	31494693-31494742	2q12	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5830436D01 (predicted) (RGD1561673_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62663211-S	ILMN_276417	PRR7	XM_001069340.1	XM_001069340.1		498704	109505464	XM_001069340.1	Prr7	XP_001069340.1	ILMN_1361375	3520128	S	1170	TCCCGAGCCCCACGGGCGAACTCCTAGCCTGACTGCGAGGCTTTTTAAAT				17p14	"PREDICTED: Rattus norvegicus proline rich 7 (Prr7), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62653174-S	ILMN_61621	LOC300314	XM_238532.3	XM_238532.3		300314	62653174	XM_238532.3	LOC300314	XP_238532.3	ILMN_1350756	1170097	S	1290	TTGTCCGGGAGGCTACAGAACGAACGGCTCAGGGGCTCCAACTCTTCTAC					"PREDICTED: Rattus norvegicus similar to Hypothetical protein MGC31278 (LOC300314), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62639357-S	ILMN_295098	RGD1563574_PREDICTED	XM_001079138.1	XM_001079138.1		499126	109461665	XM_001079138.1	RGD1563574_predicted	XP_001079138.1	ILMN_1349227	5270161	S	1840	CCACACGACACTTAGCTGCAAGATATGGGCTGCCTGCCACCTGGTCTACC				1q21	"PREDICTED: Rattus norvegicus similar to Hypothetical protein MGC30332 (predicted) (RGD1563574_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62661994-S	ILMN_49873	LOC502021	XM_577449.1	XM_577449.1		502021	62661994	XM_577449.1	LOC502021	XP_577449.1	ILMN_1374192	60398	S	1638	AGACGAACCCCCGATGTCCAGCAGGGTCTTGCTTCAGCAGTGGATTGGAG					"PREDICTED: Rattus norvegicus similar to LOC283514 protein (LOC502021), mRNA."
Receptor -> Protein kinase receptor -> Tyrosine protein kinase receptor;Kinase -> Protein kinase -> Tyrosine protein kinase receptor	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Signal transduction -> Cell surface receptor mediated signal transduction -> Receptor protein tyrosine kinase signaling pathway;Developmental processes -> Ectoderm development -> Neurogenesis;Developmental processes -> Mesoderm development;Cell proliferation and differentiation	Rattus norvegicus	RefSeq	GI_62649885-S	ILMN_52458	EPHA8	XM_342952.3	XM_342952.3		60589	109475685	XM_342952.3	Epha8	XP_342953.3	ILMN_1350998	1340300	S	2827	GTTCGTGCCCTCGGCATCACCCTCATGGGCCACCAGAAGAAAATCCTTGG	5	-	155696453-155696502	5q36	"PREDICTED: Rattus norvegicus Eph receptor A8 (Epha8), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]; The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand [goid 7169] [evidence IEA]	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate [goid 4713] [evidence IEA]; Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity [goid 4714] [evidence IEA]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with an ephrin to initiate a change in cell activity [goid 5003] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]"
Oxidoreductase -> Reductase	Lipid, fatty acid and steroid metabolism -> Steroid metabolism -> Cholesterol metabolism	Rattus norvegicus	RefSeq	GI_40538851-S	ILMN_264576	HMGCR	NM_013134.2	NM_013134.2		25675	40538851	NM_013134.2	Hmgcr	NP_037266.2	ILMN_1351282	1660717	S	4139	CCTGAGCTTGTCGTGGAAGTGGTAGTAAACCGCATTGAGTGTTGATGCTG	2	-	27127620-27127669	2q12	"Rattus norvegicus 3-hydroxy-3-methylglutaryl-Coenzyme A reductase (Hmgcr), mRNA."	"The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IDA]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence ISS]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues [goid 8299] [evidence IEA]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; The pathway that converts acetate, in the form of acetyl-CoA, to farnesyl diphosphate (FPP) through a series of mevalonate intermediates. Farnesyl diphosphate is an important substrate for other essential pathways, such as biosynthesis of sterols [goid 10142] [evidence TAS]; The chemical reactions and pathways involving coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester [goid 15936] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of MAP kinase activity [goid 43407] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of MAP kinase activity [goid 43407] [evidence IEA]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]"	"Catalysis of the reaction: (R)-mevalonate + CoA + 2 NADP+ = (S)-3-hydroxy-3-methylglutaryl-CoA + 2 NADPH + 2 H+ [goid 4420] [evidence ISS]; Catalysis of the reaction: (R)-mevalonate + CoA + 2 NADP+ = (S)-3-hydroxy-3-methylglutaryl-CoA + 2 NADPH + 2 H+ [goid 4420] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the reaction: (R)-mevalonate + CoA + 2 NAD+ = 3-hydroxy-3-methylglutaryl-CoA + 2 NADH + 2 H+ [goid 42282] [evidence IDA]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence IDA]; Interacting selectively with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH [goid 50661] [evidence IEA]"	3H3M; 3	3H3M; 3
		Rattus norvegicus	RefSeq	GI_62667047-S	ILMN_63685	LOC363477	XM_343798.2	XM_343798.2		363477	62667047	XM_343798.2	LOC363477	XP_343799.2	ILMN_1361492	780546	S	458	CAGCATCATCTCAACTGAGATAGGCCACTCATCTGCCCAGTTCCTTCAGC					"PREDICTED: Rattus norvegicus similar to Beta-sarcoglycan (Beta-SG) (43 kDa dystrophin-associated glycoprotein) (43DAG) (A3b) (LOC363477), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_51036676-S	ILMN_278126	LMBRD1	NM_139189.2	NM_139189.2		246046	51036676	NM_139189.2	Lmbrd1	NP_631928.2	ILMN_1358501	2350338	S	2109	GCCGCGTATTGCTTGTGGATAAGCGGAACTCTCATGGCAGCTTGCTTTCA	9	+	23511093-23511142	9q13	"Rattus norvegicus LMBR1 domain containing 1 (Lmbrd1), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"
		Rattus norvegicus	RefSeq	GI_62650123-S	ILMN_64451	SSFA1_PREDICTED	XM_345601.2	XM_345601.2		366501	62650123	XM_345601.2	Ssfa1_predicted	XP_345602.2	ILMN_1373067	1770114	S	884	TAGAAGTAAAAAGTGGGCTGTTATGGAGTCGTGGCGAGGCCGGCGCGTCC					"PREDICTED: Rattus norvegicus sperm specific antigen 1 (predicted) (Ssfa1_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62666574-S	ILMN_60568	LOC367731	XM_578970.1	XM_578970.1		367731	62666574	XM_578970.1	LOC367731	XP_578970.1	ILMN_1374823	2510128	S	988	AGAGAAAGCAGGAGAGGGAACGGAAGAAGAGGAAGTGCAAGGTGCTCTGG				Xq13	"PREDICTED: Rattus norvegicus similar to nuclear protein (LOC367731), mRNA."
Nucleic acid binding -> Histone	Nucleoside, nucleotide and nucleic acid metabolism -> Chromatin packaging and remodeling	Rattus norvegicus	RefSeq	GI_27685706-S	ILMN_264659	RGD1562724_PREDICTED	XM_001068552.1	XM_001068552.1		291113	109505731	XM_001068552.1	RGD1562724_predicted	XP_001068552.1	ILMN_1356624	3140390	S	100	GGAGGAGTGAAGAGACCTCATTGTTACAGGTCCAATGCAGTGGCACTCCG				17p11	"PREDICTED: Rattus norvegicus similar to H3 histone, family 3B (predicted) (RGD1562724_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_55742752-S	ILMN_284300	IFT74	NM_001007001.1	NM_001007001.1		313365	55742752	NM_001007001.1	Ift74	NP_001007002.1	ILMN_1352412	6650136	S	1750	GACACATGCTCAGCTTACAAACTTGGAGAGGAAGTGGCAGCATCTGGAGC	5	+	114998187-114998199:115002452-115002488	5q33	"Rattus norvegicus intraflagellar transport 74 homolog (Chlamydomonas) (Ift74), mRNA."	"Long whiplike or feathery structures borne either singly or in groups by the motile cells of many bacteria and unicellular eukaryotes and by the motile male gametes of many eukaryotic organisms, which propel the cell through a liquid medium [goid 19861] [evidence IEA]"			MGC94371; Ccdc2	MGC94371; Ccdc2
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Neuronal activities	Rattus norvegicus	RefSeq	GI_62638608-S	ILMN_263254	RGD1564755_PREDICTED	XM_001053677.1	XM_001053677.1		298457	109460820	XM_001053677.1	RGD1564755_predicted	XP_001053677.1	ILMN_1367762	450215	S	2063	ACCTCTGCTTTTTGGCACTTGGAAGTTGTGTCATGGCCTTCTTGTCCAGG					"PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN5) (predicted) (RGD1564755_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47577848-S	ILMN_294556	OLR1199	NM_001000819.1	NM_001000819.1		405107	47577848	NM_001000819.1	Olr1199	NP_001000819.1	ILMN_1371472	6400446	S	468	GGCCCACACCATATCCATGGGGAGACTGACCTTCTGTGCTGACAACCTTG	8	+	39124685-39124734	8q21	"Rattus norvegicus olfactory receptor 1199 (Olr1199), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1199	Olr1199
Nucleic acid binding -> Chromatin/chromatin-binding protein	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription;Nucleoside, nucleotide and nucleic acid metabolism -> Chromatin packaging and remodeling	Rattus norvegicus	RefSeq	GI_62651796-S	ILMN_273474	BRD4	XM_001077931.1	XM_001077931.1		362844	109481649	XM_001077931.1	Brd4	XP_001077931.1	ILMN_1372828	6770156	S	4874	TCGCCTGGGGAGTAAGGCCACCAACCAAAGTCAGTCCTTCCCACCTGTGT				7q11	"PREDICTED: Rattus norvegicus bromodomain containing 4 (Brd4), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]"	"The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of DNA binding, selective interaction with deoxyribonucleic acid [goid 43388] [evidence ISS]"	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]
Select regulatory molecule -> Protease inhibitor -> Serine protease inhibitor	Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_62659178-S	ILMN_269756	SERPINB13_PREDICTED	XM_222497.3	XM_222497.3		304690	62659178	XM_222497.3	Serpinb13_predicted	XP_222497.2	ILMN_1350373	5050093	S	1120	TTCCTGCACAGATCGTTCCTGGTGGTGACTGAGGAAGGCGTTGAGGCCAC	13	+	13209025-13209074	13p13	"PREDICTED: Rattus norvegicus serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 13 (predicted) (Serpinb13_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62655158-S	ILMN_69518	LOC501155	XM_580166.1	XM_580166.1		501155	62655158	XM_580166.1	LOC501155	XP_580166.1	ILMN_1354794	3130577	S	88	GTCCGGTAATCAGTGTACTGGCTAAAGGGGCTGGACCCTCTCCTCCTGTC					"PREDICTED: Rattus norvegicus LOC501155 (LOC501155), mRNA."
Transporter -> Other transporter	Transport -> Small molecule transport;Transport -> Extracellular transport and import	Rattus norvegicus	RefSeq	GI_13242268-S	ILMN_283909	SLC6A1	NM_024371.1	NM_024371.1		79212	13242268	NM_024371.1	Slc6a1	NP_077347.1	ILMN_1363429	2640300	S	3328	TCTTCCCGAGGCCACTTGTAGCAGGGTCGTGTGGCTGAGGCATCTACCTG	4	+	150264467-150264516	4q42	"Rattus norvegicus solute carrier family 6 (neurotransmitter transporter, GABA), member 1 (Slc6a1), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 5887] [evidence IEA]; Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma [goid 19717] [evidence IDA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]"	"The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus [goid 9744] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus [goid 10033] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins [goid 10243] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus [goid 10288] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a purine stimulus. Aside from DNA and RNA, purines are biochemically significant components in a number of other important biomolecules, such as ATP, GTP, cyclic AMP, NADH, and coenzyme A [goid 14074] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA) [goid 32229] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen [goid 32355] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cocaine stimulus. Cocaine is a crystalline alkaloid obtained from the leaves of the coca plant [goid 42220] [evidence IEP]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus [goid 51592] [evidence IEP]; The directed movement of gamma-aminobutyric acid (GABA, 4-aminobutyrate) into a cell or organelle [goid 51939] [evidence IDA]"	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: neurotransmitter(out) + Na+(out) = neurotransmitter(in) + Na+(in) [goid 5328] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: gamma-aminobutyric acid(out) + Na+(out) = gamma-aminobutyric acid(in) + Na+(in) [goid 5332] [evidence IDA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: gamma-aminobutyric acid(out) + Na+(out) = gamma-aminobutyric acid(in) + Na+(in) [goid 5332] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IDA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15293] [evidence IEA]	Gabt1	Gabt1
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47577670-S	ILMN_287459	OLR562	NM_001000667.1	NM_001000667.1		404869	47577670	NM_001000667.1	Olr562	NP_001000667.1	ILMN_1373817	2470706	S	702	GGCATCAGCCAAAAGTCGAGCCAAAGCCTTCTCTACCTGCTCATCCCATC	3	+	71085065-71085114	3q24	"Rattus norvegicus olfactory receptor 562 (Olr562), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	"Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]"	Olr562	Olr562
		Rattus norvegicus	RefSeq	GI_62667126-S	ILMN_263248	LOC680162	XR_005658.1	XR_005658.1		680162	109458859	XR_005658.1	LOC680162		ILMN_1355650	4050035	S	536	GGAGGGAGAAGATGGGGAAAGGGAAGGAGGCCTAAAAGAGAAACCAGATG	1	+	118081784-118081833	1q22	"PREDICTED: Rattus norvegicus similar to Nucleosome binding protein 1 (Nucleosome binding protein 45) (NBP-45) (GARP45 protein) (LOC680162), mRNA."
		Rattus norvegicus	RefSeq	GI_62662831	ILMN_49803	LOC361165	XM_341450.2	XM_341450.2		361165	62662831	XM_341450.2	LOC361165	XP_341451.2	ILMN_1650765	870575	S	1743	TCCAGGTGAGTTAGCGGTCGCCAGATGGAAGCTGGAGGATGAGCAGTCAC					"PREDICTED: Rattus norvegicus similar to D8Ertd354e protein (LOC361165), mRNA."
Molecular function unclassified	Signal transduction -> Intracellular signaling cascade	Rattus norvegicus	RefSeq	GI_62667543-S	ILMN_271203	PDZD4_PREDICTED	XM_001057431.1	XM_001057431.1		293856	109462339	XM_001057431.1	Pdzd4_predicted	XP_001057431.1	ILMN_1356616	1190133	S	2759	GTGCTTGCCAATAGTTGTTTTCTGTTTTGTGGACCTGCTCTGGGGGCTGG				Xq37	"PREDICTED: Rattus norvegicus PDZ domain containing 4 (predicted) (Pdzd4_predicted), mRNA."
Cytoskeletal protein -> Microtubule family cytoskeletal protein;Ligase -> Other ligase	Protein metabolism and modification	Rattus norvegicus	RefSeq	GI_58865971-A	ILMN_292470	TTLL1	NM_001012200.1	NM_001012200.1		362969	58865971	NM_001012200.1	Ttll1	NP_001012200.1	ILMN_1376505	3130402	S	1125	TGCAGTCTCTCAAGGCTGTGGCACCTGTGATGAACAACGACAAGCACTGC	7	+	121437477-121437499:121441351-121441377	7q34	"Rattus norvegicus tubulin tyrosine ligase-like 1 (Ttll1), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]"	"The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]"	"Catalysis of the reaction: ATP + detyrosinated alpha-tubulin + L-tyrosine = alpha-tubulin + ADP + phosphate [goid 4835] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]"
Cytoskeletal protein -> Microtubule family cytoskeletal protein;Ligase -> Other ligase	Protein metabolism and modification	Rattus norvegicus	RefSeq	GI_34868855	ILMN_292470	TTLL1	NM_001012200.1	NM_001012200.1		362969	58865971	NM_001012200.1	Ttll1	NP_001012200.1	ILMN_1650455	2900402	S	1468	GGGGCCCAGAACAGGCCGCTCGAGAGACTCAGGAAGAAATGTCCTCACAA				7q34	"Rattus norvegicus tubulin tyrosine ligase-like 1 (Ttll1), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]"	"The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification) [goid 6464] [evidence IEA]"	"Catalysis of the reaction: ATP + detyrosinated alpha-tubulin + L-tyrosine = alpha-tubulin + ADP + phosphate [goid 4835] [evidence IEA]; Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]"
Phosphatase -> Protein phosphatase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Signal transduction -> Intracellular signaling cascade -> Other intracellular signaling cascade	Rattus norvegicus	RefSeq	GI_31077117	ILMN_57177	PPP2R5B	NM_181379.2	NM_181379.2		309179	60593006	NM_181379.2	Ppp2r5b	NP_852044.1	ILMN_1649757	6040487	S	1232	CACTGTGCTGCCTGCGGTATTTGGGACCCTCTACCAAGTGTCCAAGGAGC	1	-	209004017-209004066	1q43	"Rattus norvegicus protein phosphatase 2, regulatory subunit B (B56), beta isoform (Ppp2r5b), mRNA."	"A heterodimer with protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic and regulatory subunits [goid 159] [evidence IEA]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Modulation of the activity of the enzyme protein phosphatase type 2A [goid 8601] [evidence IEA]
Transcription factor -> Zinc finger transcription factor -> KRAB box transcription factor	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62639436-S	ILMN_55165	ZFP84_PREDICTED	XM_218463.3	XM_218463.3		308482	62639436	XM_218463.3	Zfp84_predicted	XP_218463.3	ILMN_1362498	2360672	S	2572	GGCTCTTACAGGTGAAGAAGCACCAGAGAGTGCACACAGTGGGGGAGATC				1q21	"PREDICTED: Rattus norvegicus zinc finger protein 84 (predicted) (Zfp84_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62644405-S	ILMN_288222	LOC680460	XM_001057281.1	XM_001057281.1		680460	109465600	XM_001057281.1	LOC680460	XP_001057281.1	ILMN_1358520	6900068	S	2816	CTAAGCACACACAGTACCTATTGGGCTGTGCACAAGTGGGAGCTGTGCAG	2	+	230990562-230990611	2q43	"PREDICTED: Rattus norvegicus similar to GC-rich promoter binding protein 1-like 1 (LOC680460), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62649462	ILMN_288222	LOC680460	XM_001057281.1	XM_001057281.1		680460	109465600	XM_001057281.1	LOC680460	XP_001057281.1	ILMN_1650756	1740647	S	13	GAGCTTTGTTATGGTTGTGGGCTAGTCACCTCTGCTGGTCGGAGAAGCTG	2	+	230987759-230987808	2q43	"PREDICTED: Rattus norvegicus similar to GC-rich promoter binding protein 1-like 1 (LOC680460), mRNA."
Transfer/carrier protein -> Other transfer/carrier protein	Intracellular protein traffic -> Other intracellular protein traffic	Rattus norvegicus	RefSeq	GI_62661714-S	ILMN_57242	XPO7	XM_341353.3	XM_341353.3		361070	109501737	XM_341353.3	Xpo7	XP_341354.2	ILMN_1357666	540500	S	4684	CTCCTCTGGCGACTGTGTGGTGAATCTTTTCTTGCGTGATCAGGTTGCGG	15	-	51069186-51069235	15p11	"PREDICTED: Rattus norvegicus exportin 7 (Xpo7), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence IEA]; Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined [goid 5643] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]"	"The aggregation, arrangement and bonding together of the nuclear localization signal of a protein with nuclear envelope proteins such as importins [goid 59] [evidence IEA]; The directed movement of a protein from the nucleus into the cytoplasm [goid 6611] [evidence IEA]; The directed movement of a protein from the nucleus into the cytoplasm [goid 6611] [evidence ISS]; The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell [goid 6886] [evidence IEA]"	"Combining with a nuclear export signal to initiate a change in cell activity [goid 5049] [evidence IEA]; Combining with a nuclear export signal to initiate a change in cell activity [goid 5049] [evidence ISS]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Enables the directed movement of proteins into, out of, within or between cells [goid 8565] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62645761-S	ILMN_51530	LOC502663	XM_578157.1	XM_578157.1		502663	62645761	XM_578157.1	LOC502663	XP_578157.1	ILMN_1359913	940463	S	819	GGCGCTGGTGTGTACGTGGAGCGGCCCCGGCGACTCACTTTCTACCTTCT				3q35	"PREDICTED: Rattus norvegicus similar to Cdc2l1 protein (LOC502663), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Neuronal activities -> Synaptic transmission -> Neurotransmitter release	Rattus norvegicus	RefSeq	GI_18249940-S	ILMN_277147	CHRM1	NM_080773.1	NM_080773.1		25229	18249940	NM_080773.1	Chrm1	NP_542951.1	ILMN_1361649	1230093	S	1016	AGGGCCAAAAACCCCGAGGGAAGGAACAGCTGGCCAAGAGAAAGACCTTC	1	+	211352753-211352802	1q43	"Rattus norvegicus cholinergic receptor, muscarinic 1 (Chrm1), mRNA."	"The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence TAS]"	"The series of molecular signals generated as a consequence of a muscarinic acetylcholine receptor binding to one of its physiological ligands; muscarinic acetylcholine receptors activate inhibitory G proteins and can be activated by the fungal alkaloid muscarine [goid 7213] [evidence IDA]; The process of communication from a neuron to a muscle, across a synapse [goid 7274] [evidence IDA]; Any process that modulates the frequency, rate or extent of locomotion of a cell or organism [goid 40012] [evidence ISS]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4981] [evidence IDA]
Membrane traffic protein -> SNARE protein	Intracellular protein traffic -> Exocytosis	Rattus norvegicus	RefSeq	GI_62644071-S	ILMN_273742	SEC22B	NM_001025686.1	NM_001025686.1		310710	71043603	NM_001025686.1	Sec22b	NP_001020857.1	ILMN_1350093	3870592	S	1017	CTTCCCTCCCCAGTACATTTGTGAGACAGCAGAGATGGGGCGGTCTCTCT	2	+	192763583-192763632	2q34	"Rattus norvegicus SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (Sec22b), mRNA."	"The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The lipid bilayer surrounding any of the compartments of the ER-Golgi intermediate compartment system [goid 33116] [evidence IEA]; A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells [goid 42470] [evidence IEA]"	"The directed movement of proteins into, out of, within or between cells [goid 15031] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence IEA]; The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell [goid 16192] [evidence ISS]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC112717	MGC112717
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62718167-S	ILMN_68977	LOC501308	XM_576721.1	XM_576721.1		501308	62718167	XM_576721.1	LOC501308	XP_576721.1	ILMN_1370558	1690279	S	78	AGTTTCATCACCCGCCTGCTGGAGCATTTTGGGAGGGGGAACGTCGATTC					"PREDICTED: Rattus norvegicus hypothetical gene supported by BC059164 (LOC501308), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"	"The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]"	"Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]"
		Rattus norvegicus	RefSeq	GI_62661771-S	ILMN_60465	LOC498551	XM_573826.1	XM_573826.1		498551	62661771	XM_573826.1	LOC498551	XP_573826.1	ILMN_1355837	2230377	S	2074	CCCTGGGACAGAACAGTTTGGCAGTGATTGGTCTCTGAATTACCCATGGC					"PREDICTED: Rattus norvegicus similar to LRRGT00108 (LOC498551), mRNA."
		Rattus norvegicus	RefSeq	GI_62659948-S	ILMN_57056	LOC364067	XM_344183.2	XM_344183.2		364067	62659948	XM_344183.2	LOC364067	XP_344184.2	ILMN_1349087	6380278	S	486	GCCGCCCCTATCCTGAGCCCACGACACACATACACAGACACACCGAATAA					"PREDICTED: Rattus norvegicus similar to UDP-glucuronate decarboxylase 1 (LOC364067), mRNA."
Phosphatase -> Other phosphatase	Lipid, fatty acid and steroid metabolism -> Phospholipid metabolism;Intracellular protein traffic -> General vesicle transport;Developmental processes -> Other developmental process	Rattus norvegicus	RefSeq	GI_62653227-S	ILMN_65248	MTMR2_PREDICTED	XM_235822.4	XM_235822.4		315422	109483051	XM_235822.4	Mtmr2_predicted	XP_235822.4	ILMN_1367638	670341	S	1806	TGGGAGCTACTCCAATCATGTCCTTTACCCAGTAGCCAGCATGCGCCACC	8	+	10605285-10605334	8q11	"PREDICTED: Rattus norvegicus myotubularin related protein 2 (predicted) (Mtmr2_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62653750-S	ILMN_267722	STRA6	NM_001029924.1	NM_001029924.1		363071	71361636	NM_001029924.1	Stra6	NP_001025095.1	ILMN_1363735	5910377	S	1882	TTGCTACAGACCAAGGACCTGATGGCCAAGGGAGCAGGACCCAAAGGCAG	8	+	61938989-61939038	8q24	"Rattus norvegicus stimulated by retinoic acid gene 6 (Stra6), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence ISS]"	"The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]	MGC114408; RGD1307551	MGC114408; RGD1307551
Molecular function unclassified	Developmental processes -> Ectoderm development -> Neurogenesis	Rattus norvegicus	RefSeq	GI_32140177-A	ILMN_265470	NNAT	NM_181687.1	NM_181687.1		94270	32140177	NM_181687.1	Nnat	NP_859015.1	ILMN_2040120	5860500	A	538	CGCACAGATCCTACCATGGAGAGCTAACACCCCACCAACCAGCAGAATGG	3	+	148271220-148271269	3q42	"Rattus norvegicus neuronatin (Nnat), transcript variant 2, mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]"	"The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus [goid 9749] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a neuron [goid 30182] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of the regulated release of insulin [goid 32024] [evidence ISS]; Any process that modulates the frequency, rate or extent of any process by which a protein is transported to, or maintained in, a specific location [goid 32880] [evidence ISS]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]"		MGC156562; Peg5	MGC156562; Peg5
Oxidoreductase -> Oxygenase	Electron transport	Rattus norvegicus	RefSeq	GI_62642221-S	ILMN_272755	CYP26C1_PREDICTED	XM_217935.3	XM_217935.3		308190	62642221	XM_217935.3	Cyp26c1_predicted	XP_217935.3	ILMN_1373749	380048	S	1285	TTTGGCGTGGAGAGTGAAGATGCGCGGGGCTCTGGTGGCCGCTTTCATTA	1	-	241954473-241954522	1q53	"PREDICTED: Rattus norvegicus cytochrome P450, family 26, subfamily C, polypeptide 1 (predicted) (Cyp26c1_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62643620-S	ILMN_56559	LOC502526	XM_578011.1	XM_578011.1		502526	62643620	XM_578011.1	LOC502526	XP_578011.1	ILMN_1350247	4060309	S	55	GAAATAAGAAGCCAGAAAGACAGGCGACAAGCTCTGCCAGCATCCAGCTG					"PREDICTED: Rattus norvegicus similar to GA18990-PA (LOC502526), mRNA."
Signaling molecule -> Membrane-bound signaling molecule	Signal transduction -> Cell surface receptor mediated signal transduction -> Other receptor mediated signaling pathway;Signal transduction -> Cell communication -> Cell adhesion-mediated signaling;Developmental processes -> Ectoderm development -> Neurogenesis	Rattus norvegicus	RefSeq	GI_62654918-S	ILMN_62598	SEMA4C_PREDICTED	XM_237095.4	XM_237095.4		301346	109485950	XM_237095.4	Sema4c_predicted	XP_237095.4	ILMN_1364995	5270546	S	2635	CGGTTATGTGCGCTTACAGTTGGGTGGAGAGGACCGAGAAGGATCTGGGC	9	-	35493629-35493678	9q21	"PREDICTED: Rattus norvegicus sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C (predicted) (Sema4c_predicted), mRNA."
Miscellaneous function -> Other miscellaneous function protein	Signal transduction -> Cell communication -> Cell adhesion-mediated signaling;Cell adhesion	Rattus norvegicus	RefSeq	GI_62649786-S	ILMN_70118	RGD1563673_PREDICTED	XM_342935.3	XM_342935.3		362616	109475614	XM_342935.3	RGD1563673_predicted	XP_342936.2	ILMN_1351389	5420059	S	647	ACGCTTCCTCAAGGCCAAGGACAGCACTTACCAGACGCTAATCTGACCCC	5	-	151901790-151901794:151901795-151901801:151902321-151902358	5q36	"PREDICTED: Rattus norvegicus similar to EAPG6122 (predicted) (RGD1563673_predicted), mRNA."
Phosphatase -> Protein phosphatase;Select calcium binding protein -> Calmodulin related protein	Signal transduction -> Intracellular signaling cascade	Rattus norvegicus	RefSeq	Rn.46320	ILMN_283935	CIB2	NM_001015010.1	NM_001015010.1		300719	62543506	NM_001015010.1	Cib2	NP_001015010.1	ILMN_1530412	6100278	S	513	TTCAAGATCTATGACTTCAACACTGACAATTTCATCTGTAAAGAAGACTT	8	-	58095152-58095189:58097540-58097551	8q24	"Rattus norvegicus calcium and integrin binding family member 2 (Cib2), mRNA."			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	MGC109329	MGC109329
Phosphatase -> Protein phosphatase;Select calcium binding protein -> Calmodulin related protein	Signal transduction -> Intracellular signaling cascade	Rattus norvegicus	RefSeq	GI_27720210-S	ILMN_283935	CIB2	NM_001015010.1	NM_001015010.1		300719	62543506	NM_001015010.1	Cib2	NP_001015010.1	ILMN_2040592	6510255	S	1071	CCTTGCAGGAGAGGTAAGGCTGAATTATCTGTGTGCTGGGCAGGCACTCC	8	-	58094228-58094277	8q24	"Rattus norvegicus calcium and integrin binding family member 2 (Cib2), mRNA."			Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	MGC109329	MGC109329
		Rattus norvegicus	RefSeq	GI_62647543-S	ILMN_48788	LOC502808	XM_578307.1	XM_578307.1		502808	62647543	XM_578307.1	LOC502808	XP_578307.1	ILMN_1369166	6380133	S	462	GCATCAAACAAGAATGGGGTCCCCTCAAGGTTAACTGGCAGTGTGAGACC					"PREDICTED: Rattus norvegicus similar to Ig light chain V region (clone 185-c1) - mouse (fragment) (LOC502808), mRNA."
		Rattus norvegicus	RefSeq	GI_62662634-S	ILMN_49630	LOC497706	XM_579538.1	XM_579538.1		497706	62662634	XM_579538.1	LOC497706	XP_579538.1	ILMN_1368460	4070039	S	14398	AGCGTCGTCGCCTAGCACCGATTTTCTGATGTAACCAGGGTTTCATACCG					"PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031819 (LOC497706), mRNA."
Oxidoreductase -> Dehydrogenase;Oxidoreductase -> Reductase	Other metabolism	Rattus norvegicus	RefSeq	GI_8393572-S	ILMN_302414	HSD11B2	NM_017081.1	NM_017081.1		25117	8393572	NM_017081.1	Hsd11b2	NP_058777.1	ILMN_1371956	7050180	S	1516	CATGAGACCATGTATACCCTACCAGGCACGACCCTTCAGCTTGGAGAGCC	19	+	35341238-35341287	19q11	"Rattus norvegicus hydroxysteroid 11-beta dehydrogenase 2 (Hsd11b2), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]"	"The process by which the hormone aldosterone decreases the rate of diuresis and natriuresis resulting in increased blood volume [goid 2017] [evidence IMP]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IDA]; The chemical reactions and pathways involving glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects [goid 8211] [evidence IDA]"	"Catalysis of the reaction: an 11-beta-hydroxysteroid + NAD(P)+ = an 11-oxosteroid + NAD(P)H + H+ [goid 3845] [evidence IDA]; Catalysis of the reaction: an 11-beta-hydroxysteroid + NAD(P)+ = an 11-oxosteroid + NAD(P)H + H+ [goid 3845] [evidence IMP]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IPI]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IDA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IDA]"	MGC93528	MGC93528
Chaperone -> Other chaperones;Select regulatory molecule -> Kinase modulator -> Kinase activator	Protein metabolism and modification -> Protein folding;Signal transduction -> Other signal transduction;Cell cycle -> Cell cycle control;Cell cycle -> Mitosis -> Cytokinesis;Cell proliferation and differentiation;Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_62642138	ILMN_299703	CDC37L1	NM_001011941.1	NM_001011941.1		293886	58865451	NM_001011941.1	Cdc37l1	NP_001011941.1	ILMN_1650114	430095	S	1306	ACCATGTGTTGCAGGAAGTCGAACTGGACGGACTCTTCCCCCACCCCTCA	1	+	232652245-232652294	1q52	"Rattus norvegicus cell division cycle 37 homolog (S. cerevisiae)-like 1 (Cdc37l1), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Cdc37l	Cdc37l
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Signal transduction -> Intracellular signaling cascade -> Calcium mediated signaling	Rattus norvegicus	RefSeq	GI_13027457-S	ILMN_287173	CAMKV	NM_024000.1	NM_024000.1		79011	13027457	NM_024000.1	Camkv	NP_076490.1	ILMN_1361085	4780711	S	3344	GCACAGTGGGCCTCCTTGGGCTGGGGAGAAAGTGGGGTTGCACAAGTTTT	8	+	113219852-113219901	8q32	"Rattus norvegicus CaM kinase-like vesicle-associated (Camkv), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"	The process of introducing a phosphate group on to a protein [goid 6468] [evidence IEA]	"Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate [goid 4674] [evidence IEA]; Interacting selectively with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states [goid 5516] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]"	1G5	1G5
Transcription factor -> Zinc finger transcription factor -> KRAB box transcription factor	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62638784-S	ILMN_269199	ZFP54_PREDICTED	XM_001054427.1	XM_001054427.1		308232	109460888	XM_001054427.1	Zfp54_predicted	XP_001054427.1	ILMN_1372630	5670180	S	1577	CAGTGTGGCAAATCTTTTACTAGGGGCTCAACTCTTAGAGCACATCAGAG				1q12	"PREDICTED: Rattus norvegicus zinc finger protein 54 (predicted) (Zfp54_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62647684-S	ILMN_266756	RGD1561966_PREDICTED	XM_001072712.1	XM_001072712.1		500229	109473778	XM_001072712.1	RGD1561966_predicted	XP_001072712.1	ILMN_1365005	3290397	S	5251	CTCATGCCCGGGGGCGGGTTGGGGGTGCAGAAGTCTCTCTATATCTACAT					"PREDICTED: Rattus norvegicus similar to MGC22014 protein (predicted) (RGD1561966_predicted), mRNA."
Receptor -> Other receptor	Intracellular protein traffic -> Endocytosis	Rattus norvegicus	RefSeq	GI_62078562-S	ILMN_279319	CD302	NM_001013916.1	NM_001013916.1		295629	62078562	NM_001013916.1	Cd302	NP_001013938.1	ILMN_1349873	3780537	S	915	CTGGACTGAGAGTTTGGGAACATCAGACGAGCACACTGAACACCTTGACA	3	-	41958282-41958323:41958324-41958331	3q21	"Rattus norvegicus CD302 molecule (Cd302), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"		"The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]"	MGC108799; RGD1307606	MGC108799; RGD1307606
Nucleic acid binding -> Histone	Nucleoside, nucleotide and nucleic acid metabolism -> Chromatin packaging and remodeling	Rattus norvegicus	RefSeq	GI_62663593-S	ILMN_58340	LOC306962	XM_225372.2	XM_225372.2		306962	62663593	XM_225372.2	LOC306962	XP_225372.2	ILMN_1370086	4070044	S	375	CGGAAAGCCACCACAAGGCCAAGGGAAATTCCCAAAGGCTCTTTTCAGAG				17q11	"PREDICTED: Rattus norvegicus similar to Histone H2A.1 (LOC306962), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62666562-S	ILMN_295708	RGD1564172_PREDICTED	XM_001057680.1	XM_001057680.1		367721	109511477	XM_001057680.1	RGD1564172_predicted	XP_001057680.1	ILMN_1373752	6370286	S	551	GAGGGTTTTTGTACCTTCTCCAGTCTTCCACTAACGGGGCTTACCGCCGG				Xq12	"PREDICTED: Rattus norvegicus similar to chromosome 2 open reading frame 33 (predicted) (RGD1564172_predicted), mRNA."
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation	Rattus norvegicus	RefSeq	GI_62646186-S	ILMN_49507	RGD1562809_PREDICTED	XM_230703.4	XM_230703.4		296250	109468983	XM_230703.4	RGD1562809_predicted	XP_230703.4	ILMN_1358494	2970435	S	1187	GAGTCTACCAGAAGCAACTCAGAATGCAGTGCCAGGGTGTGCCCAGAGTC	3	-	140505489-140505533:140505999-140506003	3q41	"PREDICTED: Rattus norvegicus similar to serine/threonine kinase (predicted) (RGD1562809_predicted), mRNA."
	Immunity and defense;Developmental processes -> Other developmental process	Rattus norvegicus	RefSeq	GI_40538853-S	ILMN_275466	CSRP1	NM_017148.2	NM_017148.2		29276	40538853	NM_017148.2	Csrp1	NP_058844.1	ILMN_1370050	450110	S	1550	CTTAATGCTCCTGGGGATGGGGACGGGGACAGAAGGGACAAGGCTGTGTA	13	+	48775685-48775734	13q13	"Rattus norvegicus cysteine and glycine-rich protein 1 (Csrp1), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence NAS]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	Csrp	Csrp
		Rattus norvegicus	RefSeq	GI_62657729-S	ILMN_64910	SFRS15	XM_213658.4	XM_213658.4		245924	109492910	XM_213658.4	Sfrs15	XP_213658.4	ILMN_1362107	60524	S	4589	GGAGAAGCACGAGGTGGCAGACAGGGCAGGTGGTAACAAAGCTGTCGAAG	11	+	29807360-29807409	11q11	"PREDICTED: Rattus norvegicus splicing factor, arginine/serine-rich 15 (Sfrs15), mRNA."		Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IMP]	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47577768-S	ILMN_269089	OLR1245	NM_001000809.1	NM_001000809.1		405095	47577768	NM_001000809.1	Olr1245	NP_001000809.1	ILMN_1362718	6020088	S	546	TCCTTTGCTGCAGCTTTCCTGTACCAGCACTTATGCCAACGAAATAGAGA	8	+	40676836-40676885	8q22	"Rattus norvegicus olfactory receptor 1245 (Olr1245), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1245	Olr1245
Select regulatory molecule	Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_18426861-S	ILMN_277555	PSMD9	NM_130430.1	NM_130430.1		161475	18426861	NM_130430.1	Psmd9	NP_569114.1	ILMN_1354571	4560605	S	1231	TTCTCTCGGCTCCCTCAAGTGTAAGGATCTGGAAGAGAGTGGCGGACGCC	12	+	34500618-34500667	12q16	"Rattus norvegicus proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 (Psmd9), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IEA]"	"A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IMP]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of insulin [goid 32024] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription [goid 45941] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter [goid 45944] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of insulin [goid 46676] [evidence IMP]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]"	"The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IPI]; The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself [goid 3713] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Any transcription regulator activity required for initiation or upregulation of transcription [goid 16563] [evidence IDA]; Interacting selectively with any of the basic Helix-Loop-Helix (bHLH) superfamily of transcription factors, important regulatory components in transciptional networks of many developmental pathways [goid 43425] [evidence IDA]"	Bridge; Bridge-1	Bridge; Bridge-1
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62647884-S	ILMN_279754	PPP4R2_PREDICTED	XM_001075424.1	XM_001075424.1		297486	109473931	XM_001075424.1	Ppp4r2_predicted	XP_001075424.1	ILMN_1363915	7100341	S	4481	CTATCGTGATGGGGTTATTGACCTAACGAGGATGCTAGTATGCACTGGCC				4q34	"PREDICTED: Rattus norvegicus protein phosphatase 4, regulatory subunit 2 (predicted) (Ppp4r2_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62666382-S	ILMN_49391	LOC365610	XM_345128.2	XM_345128.2		365610	62666382	XM_345128.2	LOC365610	XP_345129.2	ILMN_1355703	4670347	S	966	GAAGGACAAGGCCAAGAACAGGCTCTCACTCAGGGATGCAACAGGGGTCC					"PREDICTED: Rattus norvegicus similar to double homeobox, 4 (LOC365610), mRNA."
		Rattus norvegicus	RefSeq	GI_62654547-S	ILMN_298308	RGD1566368_PREDICTED	XR_009248.1	XR_009248.1		301083	109485637	XR_009248.1	RGD1566368_predicted		ILMN_1349726	2190333	S	1847	GGACTTTTGTCACACGCCACCTCAAGAGCAGAGAACAGTTTCCCGAGGCC				8q32	"PREDICTED: Rattus norvegicus similar to Solute carrier family 6 (neurotransmitter transporter), member 20 (predicted) (RGD1566368_predicted), mRNA."
Defense/immunity protein -> Major histocompatibility complex antigen	Immunity and defense -> T-cell mediated immunity -> MHCI-mediated immunity	Rattus norvegicus	RefSeq	GI_57012411-S	ILMN_282745	RT1-CE15	NM_001008838.1	NM_001008838.1		414789	57012411	NM_001008838.1	RT1-CE15	NP_001008838.1	ILMN_1367473	3170020	S	961	GCCATGATTGGAGCTGTGGCCGTGATTGGAGCTGTGGTGGCTGTTGTGAG	20|NW_047606.1	-	56420-56469		"Rattus norvegicus RT1 class I, CE15 (RT1-CE15), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules [goid 42612] [evidence IEA]"	The process by which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules [goid 2474] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]; The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex [goid 19882] [evidence IEA]
Signaling molecule -> Growth factor	Signal transduction -> Cell surface receptor mediated signal transduction -> Other receptor mediated signaling pathway;Signal transduction -> Cell communication	Rattus norvegicus	RefSeq	GI_9506718-S	ILMN_280538	GDF15	NM_019216.1	NM_019216.1		29455	9506718	NM_019216.1	Gdf15	NP_062089.1	ILMN_1351674	5270707	S	651	TGGAGACTGTGCAGGCAACTCTCGAGGACCTAGGTTGGAGCGACTGGGTA	16	+	19313176-19313225	16p14	"Rattus norvegicus growth differentiation factor 15 (Gdf15), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence ISS]"		"Functions to control the survival, growth, differentiation and effector function of tissues and cells [goid 5125] [evidence IEA]; The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62657374	ILMN_60543	RGD1311298_PREDICTED	XM_213532.3	XM_213532.3		287840	109489408	XM_213532.3	RGD1311298_predicted	XP_213532.2	ILMN_1650174	2940110	S	1843	CCAGGGCCAGAGGGCCACCACTAAGGAGAAACTGCCTTGGATTGAGTTCC	10	+	106547650-106547699	10q32.3	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA D030012E24 gene (predicted) (RGD1311298_predicted), mRNA."
Select regulatory molecule -> Other enzyme regulator;Miscellaneous function	Miscellaneous	Rattus norvegicus	RefSeq	GI_29336094-S	ILMN_289915	SEL1H	NM_177933.1	NM_177933.1		314352	29336094	NM_177933.1	Sel1h	NP_808794.1	ILMN_1350394	3780070	S	3558	CACTGCTCAGCGGCCATGCTGCCACCCTTCTGTTGTAAACGCTAGGAAAC	6	-	115431436-115431485	6q31	"Rattus norvegicus Sel1 (suppressor of lin-12) 1 homolog (C. elegans) (Sel1h), mRNA."				Sel1l	Sel1l
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62661469-S	ILMN_262565	RGD1310211_PREDICTED	XM_001057531.1	XM_001057531.1		305887	109502406	XM_001057531.1	RGD1310211_predicted	XP_001057531.1	ILMN_1350637	5700537	S	869	TAAGTGTCAGCAAGCGAGAGAAAGGACTGCGAAGGCGGGCGAGTGCCATG				15p13	"PREDICTED: Rattus norvegicus similar to CG11030-PA (predicted) (RGD1310211_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Pheromone response	Rattus norvegicus	RefSeq	GI_57113812-S	ILMN_273553	V1RD23	NM_001008947.1	NM_001008947.1		494293	57113812	NM_001008947.1	V1rd23	NP_001008947.1	ILMN_1366795	540706	S	865	TTGTTGATCGTCAGAGATCCTAAGGATCCTTGTTCTGTGCGATTCAGCTG	1	-	67152722-67152771	1q12	"Rattus norvegicus vomeronasal 1 receptor, D23 (V1rd23), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with a pheromone to initiate a change in cell activity [goid 16503] [evidence IEA]
Transcription factor -> Homeobox transcription factor;Nucleic acid binding -> Other DNA-binding protein	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Developmental processes -> Segment specification;Developmental processes -> Ectoderm development -> Neurogenesis	Rattus norvegicus	RefSeq	GI_8393132-S	ILMN_294150	UNCX	NM_017179.1	NM_017179.1		29375	8393132	NM_017179.1	Uncx	NP_058875.1	ILMN_1361011	2900538	S	2311	GGAGGGATCAAAAGACCCCGTATCCCCTAACCCACAAAAACCCCACAACG	12	-	15576568-15576617	12q11	"Rattus norvegicus UNC homeobox (Uncx), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes [goid 1502] [evidence ISS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate [goid 7389] [evidence ISS]; The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state [goid 7399] [evidence IEA]; The process whose specific outcome is the progression of the dorsal region of the spinal cord over time, from its formation to the mature structure. The dorsal region of the mature spinal cord contains neurons that process and relay sensory input [goid 21516] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that modulates the frequency, rate or extent of cell differentiation, the process whereby relatively unspecialized cells acquire specialized structural and functional features [goid 45595] [evidence ISS]"	"The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]"	PHD1; Chx4	PHD1; Chx4
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62639196-S	ILMN_282913	RGD1560854_PREDICTED	XM_001077734.1	XM_001077734.1		499106	109461517	XM_001077734.1	RGD1560854_predicted	XP_001077734.1	ILMN_1369707	3130465	S	502	CCTCAGTGTGGCCTGGTGGCCTTGTGGATGGCAGGAGCTCTTCTTTCAAC				1q21	"PREDICTED: Rattus norvegicus similar to FLJ41131 protein (predicted) (RGD1560854_predicted), mRNA."
Nucleic acid binding -> mRNA processing factor -> mRNA splicing factor	Nucleoside, nucleotide and nucleic acid metabolism -> Pre-mRNA processing -> mRNA splicing	Rattus norvegicus	RefSeq	GI_62649742-S	ILMN_68042	RGD1309198_PREDICTED	XM_232775.4	XM_232775.4		313056	109475570	XM_232775.4	RGD1309198_predicted	XP_232775.4	ILMN_1360448	2190020	S	702	GGGACCTACGCCAAAACAAGTTAACCTACACCATGAGAGGCCATGCCGAC	5	+	149410743-149410792	5q36	"PREDICTED: Rattus norvegicus similar to U5 snRNP-specific protein (Prp8-binding) (predicted) (RGD1309198_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62645719-S	ILMN_49681	DDB2_PREDICTED	XM_242065.3	XM_242065.3		311186	62645719	XM_242065.3	Ddb2_predicted	XP_242065.3	ILMN_1368771	3450333	S	1194	CACCGCCATTTTCAGCACCTCACACCCATCAAGGCGACCTGGCATTCACG					"PREDICTED: Rattus norvegicus damage specific DNA binding protein 2 (predicted) (Ddb2_predicted), mRNA."
Signaling molecule -> Peptide hormone;Select regulatory molecule -> Protease inhibitor -> Other protease inhibitor;Select regulatory molecule -> Other enzyme regulator -> Other enzyme inhibitor;Protease -> Serine protease;Select calcium binding protein -> Calmodulin related protein;Select calcium binding protein -> Annexin	Lipid, fatty acid and steroid metabolism -> Lipid and fatty acid transport;Transport -> Lipid and fatty acid transport;Protein metabolism and modification -> Proteolysis;Immunity and defense -> Blood clotting;Apoptosis;Developmental processes -> Mesoderm development -> Angiogenesis;Blood circulation and gas exchange;Cell proliferation and differentiation	Rattus norvegicus	RefSeq	GI_62638540-S	ILMN_54690	PLG	XM_574314.2	XM_574314.2		85253	109457752	XM_574314.2	Plg	XP_574314.1	ILMN_1354227	5570593	S	2333	GCCAGGGCGACAGTGGAGGACCTCTGGTTTGCTTCGAGAAGGACAAGTAT	1	-	42782821-42782866:42783042-42783045	1q11	"PREDICTED: Rattus norvegicus plasminogen (Plg), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]"	"The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence ISS]; The regrowth of lost or destroyed tissues [goid 42246] [evidence IEA]; The regrowth of lost or destroyed tissues [goid 42246] [evidence ISS]; An ongoing process that solubilizes fibrin, chiefly by the proteolytic action of plasmin, resulting in the removal of small blood clots [goid 42730] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45445] [evidence IEA]; The process whereby a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers [goid 45445] [evidence ISS]; The cellular homeostatic process by which a muscle fiber is preserved in a stable functional or structural state [goid 46716] [evidence IEA]; The cellular homeostatic process by which a muscle fiber is preserved in a stable functional or structural state [goid 46716] [evidence ISS]; The reorganization or renovation of existing tissues. This process can either change the characteristics of a tissue such as in blood vessel remodeling, or result in the dynamic equilibrium of a tissue such as in bone remodeling [goid 48771] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein during the chemical reactions and pathways resulting in the breakdown of a protein by individual cells [goid 51603] [evidence IDA]; The hydrolysis of a peptide bond or bonds within a protein during the chemical reactions and pathways resulting in the breakdown of a protein by individual cells [goid 51603] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of fibrinolysis, an ongoing process that solubilizes fibrin, resulting in the removal of small blood clots [goid 51918] [evidence ISS]; The sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers [goid 7596] [evidence IEA]"	"Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain [goid 4175] [evidence IDA]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Interacting selectively with an apolipoprotein, the protein component of a lipoprotein complex [goid 34185] [evidence ISS]; Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine) [goid 4252] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]"
Select regulatory molecule -> G-protein modulator -> Other G-protein modulator	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Intracellular protein traffic -> Exocytosis;Intracellular protein traffic -> General vesicle transport	Rattus norvegicus	RefSeq	GI_62645965-S	ILMN_283757	SEC23B_PREDICTED	XM_001054580.1	XM_001054580.1		362226	109470933	XM_001054580.1	Sec23b_predicted	XP_001054580.1	ILMN_1369410	1780315	S	2217	CTCAGACACACAATAACCTGTATGCTTGGGGACAGGAAACTGGAGCGCCC				3q41	"PREDICTED: Rattus norvegicus SEC23B (S. cerevisiae) (predicted) (Sec23b_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62642388-S	ILMN_283898	RGD1564197_PREDICTED	XM_001058110.1	XM_001058110.1		499362	109463939	XM_001058110.1	RGD1564197_predicted	XP_001058110.1	ILMN_1360975	1980181	S	2003	CGCCGCCCCGGAAGCCCTCGCCGTGCAATTCTGTATGGCTTCTGTATAAA				1q54	"PREDICTED: Rattus norvegicus similar to Lbx1 (predicted) (RGD1564197_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Signal transduction -> Cell surface receptor mediated signal transduction -> Cytokine and chemokine mediated signaling pathway;Immunity and defense -> Cytokine/chemokine mediated immunity;Cell structure and motility -> Cell motility	Rattus norvegicus	RefSeq	GI_62638552-S	ILMN_291182	CCR6	NM_001013145.1	NM_001013145.1		308163	61557090	NM_001013145.1	Ccr6	NP_001013163.1	ILMN_1650882	60689	S	997	CCGAGTCGTGATTGCTGTGGTTCTCGTGTTCCTGGCTTGTCAGATCCCTC	1	-	47115903-47115952	1q11	"Rattus norvegicus chemokine (C-C motif) receptor 6 (Ccr6), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4945] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Combining with a C-C chemokine to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif [goid 16493] [evidence IEA]	MGC108876	MGC108876
Chaperone -> Hsp 70 family chaperone	Protein metabolism and modification -> Protein folding	Rattus norvegicus	RefSeq	Rn.37805	ILMN_270625	HSPH1	NM_001011901.1	NM_001011901.1		288444	58865371	NM_001011901.1	Hsph1	NP_001011901.1	ILMN_1530359	6980619	S	1885	AAGAAAACAAAATCCCAGATGCTGACAAAGCAAATGAAAAGAAAGTTGAT	12	+	5809443-5809492	12p11	"Rattus norvegicus heat shock 105kDa/110kDa protein 1 (Hsph1), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]; The process of assisting in the correct noncovalent assembly of posttranslational proteins and is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release [goid 51085] [evidence ISS]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]"	Hsp105	Hsp105
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62666386-S	ILMN_49553	LOC294497	XM_228268.4	XM_228268.4		294497	109509560	XM_228268.4	LOC294497	XP_228268.4	ILMN_1359368	5130364	S	524	TCACTCAGGGATGCAACAAGGGCCCCTGGGTCTCTTCCTGGATCAATTGC	20	+	38327304-38327353	20q12	"PREDICTED: Rattus norvegicus hypothetical LOC294497 (LOC294497), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]"	"The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_6981609-S	ILMN_69817	SVS4	NM_012662.2	NM_012662.2		24802	78214329	NM_012662.2	Svs4	NP_036794.1	ILMN_1368856	5720722	S	287	GCAAGCACATCTCTAGGAGTTCCGGTGGCTCCAACATGGAAGGTGAGAGC	3	+	155212990-155213039	3q42	"Rattus norvegicus seminal vesicle secretory protein 4 (Svs4), mRNA."	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]			Svs4; RNSVSP4U; SVSIV1	Svs4; RNSVSP4U; SVSIV1
		Rattus norvegicus	RefSeq	GI_62718718-S	ILMN_276368	RGD1562933_PREDICTED	XR_009104.1	XR_009104.1		501454	109484900	XR_009104.1	RGD1562933_predicted		ILMN_1369340	2350685	S	847	GAGGGTTTCTGGCTGTCTAGGGAAGGACATTGAGGGGCTCAGGTTGAGGG				8q24	"PREDICTED: Rattus norvegicus similar to product is unknown~seizure-related gene (predicted) (RGD1562933_predicted), mRNA."
Transcription factor -> Other transcription factor;Nucleic acid binding	Carbohydrate metabolism;Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Signal transduction -> Cell surface receptor mediated signal transduction -> Other receptor mediated signaling pathway;Signal transduction -> Cell communication;Sensory perception -> Vision;Developmental processes -> Embryogenesis;Developmental processes -> Anterior/posterior patterning;Developmental processes -> Segment specification;Developmental processes -> Ectoderm development -> Neurogenesis;Developmental processes -> Mesoderm development;Cell cycle -> Cell cycle control;Cell proliferation and differentiation;Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_62666295-S	ILMN_67535	FOXO3_PREDICTED	XM_215421.3	XM_215421.3		294515	62666295	XM_215421.3	Foxo3_predicted	XP_215421.2	ILMN_1374077	2470019	S	2899	GCAGAAGGAAGGTGTTGTGTCAGTTCCCAGTCTGAGCTTTTGAGCCTGTG				20q13	"PREDICTED: Rattus norvegicus forkhead box O3 (predicted) (Foxo3_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62643695-S	ILMN_60328	RGD1309007_PREDICTED	XM_215595.4	XM_215595.4		295160	109464987	XM_215595.4	RGD1309007_predicted	XP_215595.4	ILMN_1352528	1990086	S	609	CATTGAGAAAGCTAGAGTTGGCCGGCAAGAGACGGAAGAACGGGCCATGC	2	-	175854636-175854652:175868727-175868759	2q34	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610034E18 gene (predicted) (RGD1309007_predicted), mRNA."
Ion channel -> Voltage-gated ion channel -> Voltage-gated potassium channel	Transport -> Ion transport -> Cation transport	Rattus norvegicus	RefSeq	GI_18959269-S	ILMN_300184	KCNJ15	NM_133321.1	NM_133321.1		170847	18959269	NM_133321.1	Kcnj15	NP_579855.1	ILMN_1354840	6220687	S	1259	AGCTTGAAGAGCAGTACAGGCAGGAGGACCAGAGGGAACGTGAGCTGAGG	11	+	35594064-35594113	11q11	"Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 15 (Kcnj15), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence ISS]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]"	 [goid 5242] [evidence IDA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence ISS]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA];  [goid 5242] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons [goid 5244] [evidence IEA]; Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]	Kir4.2	Kir4.2
		Rattus norvegicus	RefSeq	GI_62638582-S	ILMN_56733	LOC499031	XM_574321.1	XM_574321.1		499031	62638582	XM_574321.1	LOC499031	XP_574321.1	ILMN_1370376	4230102	S	211	TACACAGGATGACCAGCAGGCCTGTCACCAGTGCCCTGGTGTTTGTGGGG					"PREDICTED: Rattus norvegicus similar to kinesin family member 25 isoform 1 (LOC499031), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62639284-S	ILMN_266244	HCST	NM_001005900.1	NM_001005900.1		474146	54312123	NM_001005900.1	Hcst	NP_001005900.1	ILMN_1350570	6200328	S	120	GCAAGTCAGACAAACGAAGGTTCCTGCTCCGGATGTGGGCCTCTGTCCCT	1	-	85369821-85369852:85370212-85370229	1q21	"Rattus norvegicus hematopoietic cell signal transducer (Hcst), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	Dap10	Dap10
Receptor -> Immunoglobulin receptor family member;Defense/immunity protein -> Immunoglobulin receptor family member	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62657319-S	ILMN_263989	CD300LF	NM_001025111.1	NM_001025111.1		287818	68341984	NM_001025111.1	Cd300lf	NP_001020282.1	ILMN_1351992	4200112	S	898	CTAGGGAGGAGATTTCATACGCTGCTCTGTCTTTGGCGAGCTTGGGTCAG	10	-	105193128-105193177	10q32.2	"Rattus norvegicus CD300 molecule-like family member f (Cd300lf), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; The process whereby a relatively unspecialized monocyte acquires the specialized features of a osteoclast cell [goid 30316] [evidence ISS]	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	RGD1309733	RGD1309733
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62651773-S	ILMN_262832	THRAP5_PREDICTED	XM_001073722.1	XM_001073722.1		299607	109481520	XM_001073722.1	Thrap5_predicted	XP_001073722.1	ILMN_1355706	6100035	S	2548	ACAGTGGGAACAGCGGTGGATCAAGAATTGCCTGTGTGGTGGGCTGTGGC				7q11	"PREDICTED: Rattus norvegicus thyroid hormone receptor associated protein 5 (predicted), transcript variant 2 (Thrap5_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47577064-S	ILMN_264275	OLR304	NM_001001039.1	NM_001001039.1		405925	47577064	NM_001001039.1	Olr304	NP_001001039.1	ILMN_1361814	3840093	S	813	CAAAATTACCTCAGTGCTATACTCAGTCCTCATGCCAACCCTAAACCCCC	1	+	200521645-200521694	1q41	"Rattus norvegicus olfactory receptor 304 (Olr304), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr304	Olr304
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576832-S	ILMN_264596	OLR203	NM_001000191.1	NM_001000191.1		293350	47576832	NM_001000191.1	Olr203	NP_001000191.1	ILMN_1356321	3120593	S	788	GTTCCTTCCACAGCCCAAAGCAGGACAATATCAGCTCAGTGTTCTACATG	1	+	163777460-163777509	1q33	"Rattus norvegicus olfactory receptor 203 (Olr203), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-163872150-163873097_ORF; Olr203	ratchr1-163872150-163873097_ORF; Olr203
Select regulatory molecule -> Phosphatase modulator	Carbohydrate metabolism -> Glycogen metabolism	Rattus norvegicus	RefSeq	Rn.47439	ILMN_292951	PPP1R3C	NM_001012072.1	NM_001012072.1		309513	58865715	NM_001012072.1	Ppp1r3c	NP_001012072.1	ILMN_1530421	430309	S	2456	AGATATGAATTATTTCGAATGTGAACTGTTTTTGTGTGTGCATAAGTACA	1	-	240992129-240992178	1q53	"Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 3C (Ppp1r3c), mRNA."		"The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5978] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5978] [evidence IEA]"
Select regulatory molecule -> Phosphatase modulator	Carbohydrate metabolism -> Glycogen metabolism	Rattus norvegicus	RefSeq	GI_62642205-A	ILMN_292951	PPP1R3C	NM_001012072.1	NM_001012072.1		309513	58865715	NM_001012072.1	Ppp1r3c	NP_001012072.1	ILMN_1376411	6510156	S	2526	GGTGCCCTGGGATGAATGCCGTTTACAGTGTGCATGTCCTTTGAGGTGTG	1	-	240992059-240992108	1q53	"Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 3C (Ppp1r3c), mRNA."		"The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages [goid 5977] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5978] [evidence ISS]; The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues [goid 5978] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47575950-S	ILMN_275548	OLR1498	NM_001000030.1	NM_001000030.1		287501	47575950	NM_001000030.1	Olr1498	NP_001000030.1	ILMN_1361420	4050181	S	676	CTTAAGGCCTCATCTACCCAGGCCATCCACAAGGTCTTTTCCACCTGTGG	10	-	61003638-61003687	10q24	"Rattus norvegicus olfactory receptor 1498 (Olr1498), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1498	Olr1498
		Rattus norvegicus	RefSeq	GI_62658369-S	ILMN_301185	RGD1307034_PREDICTED	XR_008372.1	XR_008372.1		304244	109496494	XR_008372.1	RGD1307034_predicted		ILMN_1358955	1400139	S	9356	ATGCCCTGGTGGGGTCTAACCATAGCCTGACTGAAATCTGCACCAAGCTC				12p12	"PREDICTED: Rattus norvegicus similar to hypothetical protein CG003 (predicted) (RGD1307034_predicted), mRNA."
Receptor;Extracellular matrix	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling	Rattus norvegicus	RefSeq	GI_62643861	ILMN_268114	RGD1562025_PREDICTED	XM_001058732.1	XM_001058732.1		499668	109467162	XM_001058732.1	RGD1562025_predicted	XP_001058732.1	ILMN_1650046	3060341	S	1783	GTTGAGCCACCAAATGGCACTCTGTCTGACCCCAACGTCACTATGCCGGG				2q34	"PREDICTED: Rattus norvegicus similar to leucine rich repeat neuronal 6D (predicted) (RGD1562025_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62653075-S	ILMN_55770	LOC363003	XM_343333.2	XM_343333.2		363003	62653075	XM_343333.2	LOC363003	XP_343334.2	ILMN_1358535	2470075	S	2205	TTAGAGGAAAGCGCAGCCACAGACATCAGGGGTCTAACAGGCCAAGTCTG					"PREDICTED: Rattus norvegicus similar to cervical cancer receptor (predicted) (LOC363003), mRNA."
Nucleic acid binding -> Chromatin/chromatin-binding protein	Nucleoside, nucleotide and nucleic acid metabolism -> DNA metabolism;Nucleoside, nucleotide and nucleic acid metabolism -> Chromatin packaging and remodeling;Cell cycle -> Mitosis -> Chromosome segregation	Rattus norvegicus	RefSeq	GI_62643553-S	ILMN_274714	SMC4L1	XM_001066172.1	XM_001066172.1		295107	109466778	XM_001066172.1	Smc4l1	XP_001066172.1	ILMN_1362345	6840239	S	3775	GCTCACTTTGGGAGGGGATGCTGAACTGGAGCTTGTGGATAGTTTAGATC				2q31	"PREDICTED: Rattus norvegicus SMC4 structural maintenance of chromosomes 4-like 1 (yeast) (Smc4l1), mRNA."	A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information [goid 5694] [evidence IEA]		"Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]"
		Rattus norvegicus	RefSeq	GI_62659810-S	ILMN_70312	LOC501868	XM_577284.1	XM_577284.1		501868	62659810	XM_577284.1	LOC501868	XP_577284.1	ILMN_1373385	2810373	S	192	ATGGAGACCATGGAGGTAGCCATGCCCATTGCTGTACAGGCTAAGCCCAG					"PREDICTED: Rattus norvegicus similar to EWS/FLI1 activated transcript 2 (EAT-2) (LOC501868), mRNA."
		Rattus norvegicus	RefSeq	GI_62644769-S	ILMN_48095	LHX3	XM_231083.3	XM_231083.3		170671	62644769	XM_231083.3	Lhx3	XP_231083.3	ILMN_1368236	4560348	S	4042	AGGACCTGTACAATTCTCTGGAGACCCTGGTAGCCCTGTGGAAGCTGGCT				3p13	"PREDICTED: Rattus norvegicus LIM homeobox protein 3 (Lhx3), mRNA."	"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"The process by which the migration of an axon growth cone of a motor neuron is directed to a specific target site in response to a combination of attractive and repulsive cues [goid 8045] [evidence ISS]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; The process whereby differentiating motor neurons in the neural tube acquire the specialized structural and/or functional features of medial motor column neurons. Medial motor column neurons are generated at all rostrocaudal levels and send axons to the axial muscles (medial group) and to the body wall muscles (lateral group). Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 21526] [evidence ISS]; The progression of the pituitary gland over time from its initial formation until its mature state. The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [goid 21983] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence ISS]; The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax [goid 30324] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]"	"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]"
Signaling molecule -> Membrane-bound signaling molecule;Defense/immunity protein	Signal transduction -> Cell communication -> Cell adhesion-mediated signaling;Immunity and defense;Developmental processes -> Ectoderm development -> Neurogenesis;Cell proliferation and differentiation;Cell structure and motility -> Cell motility	Rattus norvegicus	RefSeq	GI_62655445-S	ILMN_279957	RGD1560359_PREDICTED	XM_578801.1	XM_578801.1		503266	62655445	XM_578801.1	RGD1560359_predicted	XP_578801.1	ILMN_1351238	2940068	S	289	TACGGCCGCCCAGAGACACTTCGGCAGCTAGGGTTCCAGTACTCCACATA	9	-	83944522-83944571	9q35	"PREDICTED: Rattus norvegicus similar to transmembrane protein Bet (predicted) (RGD1560359_predicted), mRNA."
Ligase -> Ubiquitin-protein ligase	Protein metabolism and modification -> Proteolysis;Cell cycle -> Cell cycle control;Cell proliferation and differentiation	Rattus norvegicus	RefSeq	GI_58865995-A	ILMN_295442	TRIM13	NM_001012210.1	NM_001012210.1		364398	58865995	NM_001012210.1	Trim13	NP_001012210.1	ILMN_1376444	3170048	S	942	GCCCACAAGCCCTTTAATGAAGAACTTCGATACCAGTCAGTGGGAGGACA	15	+	40751717-40751766	15p12	"Rattus norvegicus tripartite motif-containing 13 (Trim13), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]"	"Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]"	Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence IEA]; Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell [goid 4871] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62660457-S	ILMN_269572	RGD1311122	NM_001037792.1	NM_001037792.1		364154	83649694	NM_001037792.1	RGD1311122	NP_001032881.1	ILMN_1355336	3520053	S	859	GTGGCAGTTTATCTGTGGGTGGCAGTTTTCTGTAGTCCTTGACGGTGACG	14	+	45520595-45520644	14p11	"Rattus norvegicus similar to RIKEN cDNA 1110003E01 (RGD1311122), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC116420	MGC116420
		Rattus norvegicus	RefSeq	GI_62646276-S	ILMN_53740	NDRG3_PREDICTED	XM_230786.3	XM_230786.3		311577	62646276	XM_230786.3	Ndrg3_predicted	XP_230786.3	ILMN_1366432	6200332	S	762	TTCCCACAGATCCAGCAGGCTAGAAGGCGGTCAAGGGCCCATAGCCTTTC					"PREDICTED: Rattus norvegicus NDRG family member 3 (predicted) (Ndrg3_predicted), mRNA."
Select regulatory molecule -> G-protein modulator -> Other G-protein modulator	Biological process unclassified	Rattus norvegicus	RefSeq	GI_58865875-A	ILMN_270285	TBC1D14	NM_001012152.1	NM_001012152.1		360956	58865875	NM_001012152.1	Tbc1d14	NP_001012152.1	ILMN_1376682	1990739	S	1175	GCCAGCAGACGACGTGTTCGCAGCTATCTCTACAGTCCAGATGCAAAGCC	14	+	79848587-79848636	14q21	"Rattus norvegicus TBC1 domain family, member 14 (Tbc1d14), transcript variant 1, mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]"	Any process that modulates the activity of a GTPase of the Rab family [goid 32313] [evidence IEA]; Any process that modulates the activity of a GTPase of the Rab family [goid 32313] [evidence IEA]	"Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Increases the rate of GTP hydrolysis by a GTPase of the Rab family [goid 5097] [evidence IEA]; Increases the rate of GTP hydrolysis by a GTPase of the Rab family [goid 5097] [evidence IEA]"	UR-NR#2; MGC124676; SRF-2	UR-NR#2; MGC124676; SRF-2
		Rattus norvegicus	RefSeq	GI_47576676-S	ILMN_277083	OLR1700_PREDICTED	XM_001074247.1	XM_001074247.1		406012	109509697	XM_001074247.1	Olr1700_predicted	XP_001074247.1	ILMN_1359558	4610731	S	677	CCTCACACCTACTTGTAGTCACACTCTTTTATGGCTCTGCGTCCTTTACC				20p12	"PREDICTED: Rattus norvegicus olfactory receptor 1700 (predicted) (Olr1700_predicted), mRNA."
Transfer/carrier protein -> Other transfer/carrier protein	Transport;Sensory perception -> Pheromone response	Rattus norvegicus	RefSeq	GI_62644882-S	ILMN_53825	LOC502611	XM_578100.1	XM_578100.1		502611	62644882	XM_578100.1	LOC502611	XP_578100.1	ILMN_1369031	670040	S	1068	GACTCCAAGCCACAGGTGAGCAGCAACAGAGTCCAAGCAGGTGGGGACCC				3p13	"PREDICTED: Rattus norvegicus similar to VNSP I (LOC502611), mRNA."
Select regulatory molecule -> G-protein modulator -> Other G-protein modulator	Signal transduction -> Intracellular signaling cascade -> Other intracellular signaling cascade	Rattus norvegicus	RefSeq	GI_62645219-A	ILMN_279380	CHN1	NM_032083.1	NM_032083.1		84030	14091776	NM_032083.1	Chn1	NP_114472.1	ILMN_1376930	4050497	S	2123	CTTCCTCCTCTCAGACATAGTGCTTTGTCTTCAGCAGAAGCGAGACGTGT	3	-	56144147-56144196	3q23	"Rattus norvegicus chimerin (chimaerin) 1 (Chn1), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence TAS]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]"	"Combining with a phorbol ester to initiate a change in cell activity [goid 1565] [evidence TAS]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence TAS]; Increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP [goid 5096] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_55741529-S	ILMN_288620	GPR180	NM_001006994.1	NM_001006994.1		306165	55741529	NM_001006994.1	Gpr180	NP_001006995.1	ILMN_1362935	870519	S	1632	CGCCGAAACGATACTTGCCCTGTGTGTCCAGCTAGCCCAGTCAGGAGATC	15	+	102955063-102955112	15q24	"Rattus norvegicus G protein-coupled receptor 180 (Gpr180), mRNA."			Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]
Molecular function unclassified	Neuronal activities -> Synaptic transmission -> Neurotransmitter release	Rattus norvegicus	RefSeq	GI_13540649-S	ILMN_262769	ICA1	NM_030844.1	NM_030844.1		81024	13540649	NM_030844.1	Ica1	NP_110471.1	ILMN_1369539	6770215	S	1937	GCATGAGTCTGCAACCTTCAACAGGGGAGCCCTCCGGCCACTCCGCAACA	4	-	33680981-33681027:33681028-33681030	4q21	"Rattus norvegicus islet cell autoantigen 1 (Ica1), mRNA."	"The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The lipid bilayer surrounding a secretory granule [goid 30667] [evidence ISS]; The lipid bilayer surrounding a secretory granule [goid 30667] [evidence ISS]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence ISS]; The lipid bilayer surrounding a synaptic vesicle [goid 30672] [evidence ISS]; A vesicle formed of membrane or protein, found in the cytoplasm of a cell [goid 31410] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]"	"The directed movement of a neurotransmitter into, out of, within or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell [goid 6836] [evidence IEA]"	"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]"	Ica69	Ica69
Miscellaneous function -> Other miscellaneous function protein	Biological process unclassified	Rattus norvegicus	RefSeq	GI_40786516-S	ILMN_262651	WDR12	NM_199410.1	NM_199410.1		363237	40786516	NM_199410.1	Wdr12	NP_955442.1	ILMN_1360454	1980020	S	844	AACAGAACAATTGGGACTGACAAGAACACCCTTGGTGACCCTCTCTGGCC	9	-	58619598-58619625:58620760-58620781	9q31	"Rattus norvegicus WD repeat domain 12 (Wdr12), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]"	The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IEA]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence ISS]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]
Transferase -> Methyltransferase	Neuronal activities;Other metabolism	Rattus norvegicus	RefSeq	GI_62661004-S	ILMN_266985	COMTD1_PREDICTED	XM_001065422.1	XM_001065422.1		305685	109502138	XM_001065422.1	Comtd1_predicted	XP_001065422.1	ILMN_1371314	4540600	S	701	GCCCAAGAACAAGGCTGTTGAATGTGTGCGGAACCTAAACGAGCGCATCC				15p16	"PREDICTED: Rattus norvegicus catechol-O-methyltransferase domain containing 1 (predicted) (Comtd1_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_13027464-S	ILMN_300524	TAS2R114	NM_023996.1	NM_023996.1		78982	13027464	NM_023996.1	Tas2r114	NP_076486.1	ILMN_1374334	2760040	S	15	GGAAGGTGTCCTCCTTTCAGTTGCAACTAGTGAGGCTTTGCTTGGCATTG	4	-	169397902-169397951	4q42	"Rattus norvegicus taste receptor, type 2, member 114 (Tas2r114), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence NAS]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells [goid 50909] [evidence IEA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence IEA]; Combining with soluble compounds to initiate a change in cell activity. These receptors are responsible for the sense of taste [goid 8527] [evidence TAS]	T2R5	T2R5
Cytoskeletal protein -> Actin family cytoskeletal protein -> Actin and actin related protein	Intracellular protein traffic -> Exocytosis;Intracellular protein traffic -> Endocytosis;Transport;Cell cycle -> Mitosis -> Cytokinesis;Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_62078650-S	ILMN_280761	ACTRT1	NM_001013961.1	NM_001013961.1		302796	62078650	NM_001013961.1	Actrt1	NP_001013983.1	ILMN_1357853	2360538	S	1179	GCAGATGTGGGTCACTGCTGAAGATTTCAAGGAGTACGGGGCATTTGTGG	X	+	132710494-132710543	Xq35	"Rattus norvegicus actin-related protein T1 (Actrt1), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]"		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]
Transfer/carrier protein;Transferase	Sulfur metabolism;Transport -> Ion transport -> Anion transport;Immunity and defense -> Detoxification	Rattus norvegicus	RefSeq	GI_20304122-A	ILMN_294907	MPST	NM_138843.1	NM_138843.1		192172	20304122	NM_138843.1	Mpst	NP_620198.1	ILMN_1376777	6840309	S	1014	GTGCCTGTCTACGATGGCTCCTGGGTGGAGTGGTACATGCGTGCCCAACC	7	+	116364041-116364090	7q34	"Rattus norvegicus mercaptopyruvate sulfurtransferase (Mpst), nuclear gene encoding mitochondrial protein, mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]"	"The directed movement of sulfate into, out of, within or between cells [goid 8272] [evidence IEA]"	"Catalysis of the reaction: thiosulfate + cyanide = SO3(2-) (sulfite) + thiocyanate [goid 4792] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: 3-mercaptopyruvate + cyanide = pyruvate + thiocyanate [goid 16784] [evidence IEA]"	Mst	Mst
Cell adhesion molecule -> Other cell adhesion molecule	Cell adhesion	Rattus norvegicus	RefSeq	GI_62657906	ILMN_284580	IGSF11	NM_001013120.1	NM_001013120.1		303926	61557017	NM_001013120.1	Igsf11	NP_001013138.1	ILMN_1650776	6350338	S	3327	ACCATCACTGGCTGCACTTATTTTTCCAAGAGGGACATTTGGGACGTCAC	11	-	63501836-63501885	11q21	"Rattus norvegicus immunoglobulin superfamily, member 11 (Igsf11), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"Any process that modulates the frequency, rate or extent of cell growth [goid 1558] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	MGC94879	MGC94879
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62642804	ILMN_61951	RGD1310992	XM_226713.4	XM_226713.4		310019	109464301	XM_226713.4	RGD1310992	XP_226713.3	ILMN_1650068	1990377	S	1391	CATAAAGGAACTGAATCGGAGAGGCGTCCTTGCCAACGCTCTTGCAGGTC	2	-	28841138-28841187	2q12	"PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ12787 (RGD1310992), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62649185-S	ILMN_265363	KLHL9_PREDICTED	XM_001054585.1	XM_001054585.1		313348	109476727	XM_001054585.1	Klhl9_predicted	XP_001054585.1	ILMN_1357766	5670091	S	3308	GGTGCTGCTGTAGCTGGTAAGCATCCAGTAATGTGTGAGCTGCCTCAAGG				5q32	"PREDICTED: Rattus norvegicus kelch-like 9 (Drosophila) (predicted) (Klhl9_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62651222-S	ILMN_271264	RGD1309550	XM_001069129.1	XM_001069129.1		299295	109479947	XM_001069129.1	RGD1309550	XP_001069129.1	ILMN_1367758	2360091	S	1051	AAAGTGACAGGCTCTACGCTATGAAGGCTGAGGTCTTGGCTCGGGCTGGC				6q32	"PREDICTED: Rattus norvegicus similar to hypothetical protein D12Ertd771e (RGD1309550), mRNA."
		Rattus norvegicus	RefSeq	GI_62644500-S	ILMN_56476	EDG7_PREDICTED	XM_346646.2	XM_346646.2		360355	62644500	XM_346646.2	Edg7_predicted	XP_346647.1	ILMN_1356030	6100722	S	1935	CCTCCGTCTTGGTGGTCTGGATACCACTGATGGGTTTGCTGGATTCCATG					"PREDICTED: Rattus norvegicus endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor 7 (predicted) (Edg7_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_50657363-S	ILMN_264917	NOTCH4	NM_001002827.1	NM_001002827.1		406162	50657363	NM_001002827.1	Notch4	NP_001002827.1	ILMN_1373256	3120465	S	6137	CTTCCCCATAGAGTATGAACAGCAATGGCAAGAGGGTTTAGGATGCCCGG	20	-	4263501-4263550	20p12	"Rattus norvegicus Notch homolog 4 (Drosophila) (Notch4), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IMP]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence IEA]; The external part of the cell wall and/or plasma membrane [goid 9986] [evidence ISS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence IEA]; The process that regulates the coordinated growth and sprouting of blood vessels giving rise to the organized vascular system [goid 1569] [evidence ISS]; The process by which the anatomical structures of branches are generated and organized. Morphogenesis pertains to the creation of form. A branch is a division or offshoot from a main stem. Examples in animals would include blood vessels, nerves, lymphatics and other endothelial or epithelial tubes [goid 1763] [evidence IEA]; The process by which the anatomical structures of branches are generated and organized. Morphogenesis pertains to the creation of form. A branch is a division or offshoot from a main stem. Examples in animals would include blood vessels, nerves, lymphatics and other endothelial or epithelial tubes [goid 1763] [evidence ISS]; The change in form (cell shape and size) that occurs during the differentiation of an endothelial cell [goid 1886] [evidence IDA]; The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell [goid 7219] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence IEA]; The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant [goid 9790] [evidence ISS]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of an endothelial cell, a thin flattened cell. A layer of such cells lines the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium [goid 45446] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of endothelial cell differentiation [goid 45602] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of endothelial cell differentiation [goid 45602] [evidence ISS]; Any process that modulates the frequency, rate or extent of development, the biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 50793] [evidence IEA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence TAS]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]
Ion channel -> Voltage-gated ion channel -> Voltage-gated potassium channel	Transport -> Ion transport -> Cation transport	Rattus norvegicus	RefSeq	GI_34856189-S	ILMN_275649	KCNA7_PREDICTED	XM_001080729.1	XM_001080729.1		365241	109461925	XM_001080729.1	Kcna7_predicted	XP_001080729.1	ILMN_1372906	1340100	S	1492	GGGACATGGCACCTGTCACCGTGGGTGGCAAGATCGTGGGCTCTCTGTGT				1q22	"PREDICTED: Rattus norvegicus potassium voltage-gated channel, shaker-related subfamily, member 7 (predicted) (Kcna7_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Muscle contraction;Apoptosis;Developmental processes;Cell proliferation and differentiation;Cell structure and motility -> Cell motility	Rattus norvegicus	RefSeq	GI_47575852-S	ILMN_295085	ADRA1B	NM_016991.2	NM_016991.2		24173	47575852	NM_016991.2	Adra1b	NP_058687.2	ILMN_1352223	610411	S	2259	ACGTGCGTGTGTCTGTTCGGTGTACGTGTGGGCTGCATGGGTGTGAGTGT	10	-	28889300-28889349	10q21	"Rattus norvegicus adrenergic, alpha-1B-, receptor (Adra1b), mRNA."	"Integral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; require detergents, such as Triton X-100, to be released from membranes [goid 299] [evidence ISS]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The reorganization or renovation of existing blood vessels [goid 1974] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine [goid 1975] [evidence ISS]; A process that is triggered by vasomotor excitation and results in a decrease in the diameter of an artery during the baroreceptor response to decreased blood pressure [goid 1987] [evidence ISS]; The process by which the presence of epinephrine or norepinephrine in the bloodstream activates, maintains or increases the rate of heart contraction [goid 1996] [evidence ISS]; Any process that increases the force with which the cardiac muscles of the heart pump blood through the circulatory system as a result of the presence of epinephrine or norepinephrine in the bloodstream or released from the nerve endings [goid 1997] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; Any process that increases the concentration of calcium ions in the cytosol [goid 7204] [evidence IDA]; The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure [goid 7512] [evidence ISS]; The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions [goid 7626] [evidence ISS]; Any process in an organism in which a change in behavior of an individual in response to repeated exposure to a visual cue [goid 8542] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus [goid 9725] [evidence IMP]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence ISS]; The increase in size or mass of an organ. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that function together as to perform a specific function [goid 35265] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process involved in the maintenance of an internal equilibrium of glucose within an organism or cell [goid 42593] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a morphine stimulus. Morphine is an opioid alkaloid, isolated from opium, with a complex ring structure [goid 43278] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics [goid 43627] [evidence IEP]; Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glycogen [goid 45818] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glycogen [goid 45819] [evidence ISS]; A change in the behavior of an organism as a result of a cocaine stimulus [goid 48148] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus [goid 48545] [evidence IMP]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4935] [evidence IEA];  [goid 4937] [evidence IDA];  [goid 4937] [evidence IEA];  [goid 4937] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA];  [goid 4935] [evidence IEA];  [goid 4937] [evidence IEA]
Molecular function unclassified	Oncogenesis -> Tumor suppressor	Rattus norvegicus	RefSeq	GI_62644153-S	ILMN_61866	DENND2D_PREDICTED	XM_227570.4	XM_227570.4		310772	109465416	XM_227570.4	Dennd2d_predicted	XP_227570.3	ILMN_1362803	5690017	S	1704	GAGGCTCTCGGCCCTGGAATCAATCTGTGGCTTTCTTCCAACTGATAACC	2	+	201799618-201799667	2q34	"PREDICTED: Rattus norvegicus DENN/MADD domain containing 2D (predicted) (Dennd2d_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_27692777-S	ILMN_50428	LOC310613	XM_227387.1	XM_227387.1		310613	27692777	XM_227387.1	LOC310613	XP_227387.1	ILMN_1363600	70484	S	44	TCAGGCAGTCACTACTCCCTCTTACACCAAAGGTGGCTTTGAAGTGCTCG					"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310008M10 (LOC310613), mRNA."
Select regulatory molecule -> G-protein modulator -> Other G-protein modulator	Biological process unclassified	Rattus norvegicus	RefSeq	GI_38454307-S	ILMN_267393	SGSM3	NM_198787.1	NM_198787.1		362963	38454307	NM_198787.1	Sgsm3	NP_942082.1	ILMN_1372262	3940148	S	2724	ATGCTGCTCAGGAAGTGCGTAGGCTAACAGCAGACAAAGGCCCCTCGACC	7	+	119305945-119305994	7q34	"Rattus norvegicus small G protein signaling modulator 3 (Sgsm3), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any specialized areas of the plasma membranes of adjacent cells where the membranes are 2-4 nm apart and penetrated by a connexon. This gap junction allows passage of small molecules and electric current. The variety in the properties of gap junctions is reflected in the number of connexins, the family of proteins which form the junction [goid 5921] [evidence ISS]"	"The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [evidence IEA]; Any process that modulates the activity of a GTPase of the Rab family [goid 32313] [evidence IEA]; A series of molecular signals within the cell that are mediated by a member of the Rap family of proteins switching to a GTP-bound active state [goid 32486] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds [goid 45732] [evidence ISS]"	"Increases the rate of GTP hydrolysis by a GTPase of the Rab family [goid 5097] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence ISS]; Interacting selectively with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases [goid 17137] [evidence ISS]"	bdif-1	bdif-1
Transcription factor -> HMG box transcription factor;Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_62643332-S	ILMN_65670	RGD1565646_PREDICTED	XM_574919.2	XM_574919.2		499593	109464742	XM_574919.2	RGD1565646_predicted	XP_574919.1	ILMN_1373901	870609	S	1070	AGACCTACATGAACGGCTCGCCCACCTACAGCATGTCCTACTCGCAGCAG	2	+	120970030-120970079	2q25	"PREDICTED: Rattus norvegicus similar to SOX2 protein (predicted) (RGD1565646_predicted), mRNA."
Transcription factor -> Other transcription factor;Nucleic acid binding	Carbohydrate metabolism;Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Signal transduction -> Cell surface receptor mediated signal transduction -> Other receptor mediated signaling pathway;Signal transduction -> Cell communication;Sensory perception -> Vision;Developmental processes -> Embryogenesis;Developmental processes -> Anterior/posterior patterning;Developmental processes -> Segment specification;Developmental processes -> Ectoderm development -> Neurogenesis;Developmental processes -> Mesoderm development;Cell cycle -> Cell cycle control;Cell proliferation and differentiation;Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_6978844-S	ILMN_58154	FOXG1	NM_012560.2	NM_012560.2		24370	81295398	NM_012560.2	Foxg1	NP_036692.1	ILMN_1369662	4480707	S	2641	CCTTGCAAATATGTAACCTGTGTTGCGCAAATGCCGCATCAATTTGAGTG	6	+	69220312-69220361	6q22	"Rattus norvegicus forkhead box G1 (Foxg1), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"Any process that activates or increases the rate of neuroblast proliferation [goid 2052] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process that modulates the rate or extent of progress through the mitotic cell cycle [goid 7346] [evidence ISS]; The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.) [goid 7420] [evidence IEP]; The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation [goid 9953] [evidence ISS]; The recognition of molecules at the central nervous system midline choice point by an axon growth cone; this choice point determines whether the growth cone will cross the midline [goid 16199] [evidence ISS]; The process whose specific outcome is the progression of a neuron whose cell body is located in the central nervous system, from initial commitment of the cell to a neuronal fate, to the fully functional differentiated neuron [goid 21954] [evidence ISS]; The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions) [goid 30900] [evidence ISS]; The process by which the anatomical structures of the inner ear are generated and organized. Morphogenesis pertains to the creation of form. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively [goid 42472] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of neuron differentiation [goid 45665] [evidence ISS]; Any process that activates or increases the rate or extent of progression through the cell cycle [goid 45787] [evidence ISS]; The process by which the structures of a neuron are generated and organized. This process occurs while the initially relatively unspecialized cell is acquiring the specialized features of a neuron [goid 48667] [evidence ISS]"	"The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]"	RATBF1A; Fkhr; Fkhl1; BF1A; Foxo1	RATBF1A; Fkhr; Fkhl1; BF1A; Foxo1
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62638412-S	ILMN_48353	RGD1311933_PREDICTED	XM_217725.3	XM_217725.3		308056	109457683	XM_217725.3	RGD1311933_predicted	XP_217725.3	ILMN_1351616	6100132	S	623	GGGATGCCCATACCTCATCCTTGGAGTATCCCACTCGTGCCTTTGTAGAC	1	+	29606604-29606653	1p11	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310057J18 (predicted) (RGD1311933_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62661648	ILMN_53952	LOC361059	XM_341340.2	XM_341340.2		361059	62661648	XM_341340.2	LOC361059	XP_341341.2	ILMN_1650957	1690164	S	1339	GCTGGGCCCTCCTGACGATGGTTTACTGACTAGAAGGAAGGCTCCGGGTT				15p12	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2610528H13 (predicted) (LOC361059), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47575956-S	ILMN_281524	OLR1500	NM_001000942.1	NM_001000942.1		405281	47575956	NM_001000942.1	Olr1500	NP_001000942.1	ILMN_1359048	2350390	S	441	TCTGTGGATGCTGACGACGACCCATGCCCTGCTGCATACCCTACTCATTG	10	-	61118883-61118932	10q24	"Rattus norvegicus olfactory receptor 1500 (Olr1500), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]
Transcription factor;Nucleic acid binding -> Nuclease	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription;Developmental processes -> Ectoderm development -> Neurogenesis;Other metabolism	Rattus norvegicus	RefSeq	GI_34852623-S	ILMN_265445	ATOH7_PREDICTED	XM_001080515.1	XM_001080515.1		365564	109510037	XM_001080515.1	Atoh7_predicted	XP_001080515.1	ILMN_1372634	6420068	S	626	CTCAGCTACATCGTGGCGCTCACCCGCATCCTAGCCGAAGCCGAGCGGGA				20p11	"PREDICTED: Rattus norvegicus atonal homolog 7 (Drosophila) (predicted) (Atoh7_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62651913-S	ILMN_65857	LOC503111	XM_578631.1	XM_578631.1		503111	62651913	XM_578631.1	LOC503111	XP_578631.1	ILMN_1372116	2690100	S	703	CTGGTGTGATGCTGAGGCGTCTGTGCGCTGAAGGGACTTGTCCCCTGGAT				7q11	"PREDICTED: Rattus norvegicus similar to Ac1147 (LOC503111), mRNA."
Select calcium binding protein -> Calmodulin related protein	Sensory perception -> Vision	Rattus norvegicus	RefSeq	GI_8393860-S	ILMN_287235	HPCAL4	NM_017357.1	NM_017357.1		50872	8393860	NM_017357.1	Hpcal4	NP_059053.1	ILMN_1373628	1850019	S	577	GAGGAGTTCAAGGAGGCGGCCAAGAGTGACCCGTCCATCGTGTTGCTGTT	5	+	142498273-142498322	5q36	"Rattus norvegicus hippocalcin-like 4 (Hpcal4), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]"		" [goid 5246] [evidence IDA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence IPI]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]"	NVP-2; Nvjp2	NVP-2; Nvjp2
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62643951-S	ILMN_276148	LOC685088	XM_001062249.1	XM_001062249.1		685088	109465091	XM_001062249.1	LOC685088	XP_001062249.1	ILMN_1355433	3290358	S	1478	GCCGAGGCTGAGAGCAGACTACAGCCCTGCAAAGAAGCTGGCTACCTGGT	2	+	182061242-182061291	2q34	"PREDICTED: Rattus norvegicus similar to Src homology 2 domain containing E (LOC685088), mRNA."
Membrane traffic protein -> Other membrane traffic protein	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62652460-S	ILMN_70293	RGD1564703_PREDICTED	XM_235335.4	XM_235335.4		314997	109480801	XM_235335.4	RGD1564703_predicted	XP_235335.4	ILMN_1348868	2970463	S	5406	CCACCTGGTCACAGCAGAAGAAGCTGAGAAAAACCCTGTTGGGAAAGCCC	7	+	95417037-95417086	7q33	"PREDICTED: Rattus norvegicus similar to mKIAA0493 protein (predicted) (RGD1564703_predicted), mRNA."
Cell adhesion molecule -> Cadherin	Signal transduction -> Cell communication -> Cell adhesion-mediated signaling;Cell adhesion;Developmental processes -> Embryogenesis	Rattus norvegicus	RefSeq	GI_12408331-S	ILMN_276361	PCDH8	NM_022868.1	NM_022868.1		64865	12408331	NM_022868.1	Pcdh8	NP_074059.1	ILMN_1365965	2630673	S	2722	CAGCTCCCCAAGACAGTGGGGCTGCAGAGCGTCTATGAGAAAGTGCTGCA	15	-	61057111-61057160	15q12	"Rattus norvegicus protocadherin 8 (Pcdh8), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo [goid 1756] [evidence ISS]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 7268] [evidence IDA]; The activities involved in the mental information processing system that deals with the storage, retrieval and modification of information a long time (typically weeks, months or years) after receiving that information. This type of memory is typically dependent on gene transcription regulated by second messenger activation [goid 7616] [evidence TAS]; The process by which the anatomical structures of embryonic epithelia are generated and organized. Morphogenesis pertains to the creation of form [goid 16331] [evidence ISS]"	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]
		Rattus norvegicus	RefSeq	GI_62667427-S	ILMN_62007	LOC503479	XM_579036.1	XM_579036.1		503479	62667427	XM_579036.1	LOC503479	XP_579036.1	ILMN_1355935	6840358	S	1121	GGCAGCCGCGCATTACAAGTGCATGTTGTTTTCTTCTGGCACTGTGCAGC					"PREDICTED: Rattus norvegicus similar to PHD finger protein 6 (LOC503479), mRNA."
Transporter -> Other transporter	Transport -> Small molecule transport	Rattus norvegicus	RefSeq	GI_16758247-S	ILMN_57086	CDW92	NM_053492.2	NM_053492.2		85254	76563922	NM_053492.2	Cdw92	NP_445944.2	ILMN_1359953	2640056	S	2663	GTATGTGCATGGGAAGTGTCTTGGGGGGAGGGTTGTAGAAGCACAGAGGA	5	+	71055944-71055993	5q24	"Rattus norvegicus CDW92 antigen (Cdw92), transcript variant 2, mRNA."				Ctl1	Ctl1
Transferase -> Glycosyltransferase	Carbohydrate metabolism;Protein metabolism and modification -> Protein modification -> Protein glycosylation	Rattus norvegicus	RefSeq	GI_62639900-S	ILMN_277117	RGD1562499_PREDICTED	XM_001080769.1	XM_001080769.1		308586	109461943	XM_001080769.1	RGD1562499_predicted	XP_001080769.1	ILMN_1352923	380131	S	1082	CTGATCTGGAACAGCCAAACAGAGGAGCCCCTGGCCATGCCTCAGCAAGA				1q22	"PREDICTED: Rattus norvegicus similar to GDP-L-fucose:beta-D-galactoside 2-alpha-1-fucosyltransferase (predicted) (RGD1562499_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62656322-S	ILMN_272435	LOC497938	NM_001017475.1	NM_001017475.1		497938	62945305	NM_001017475.1	LOC497938	NP_001017475.1	ILMN_1360670	6840059	S	1320	GCGCTTGGCAGAAGGCCAGATTTCAGATCCAACCCCACCTGCAACCACCT	10	-	56638855-56638904	10q24	"Rattus norvegicus similar to RIKEN cDNA 4933402P03 (LOC497938), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62945305	ILMN_272435	LOC497938	NM_001017475.1	NM_001017475.1		497938	62945305	NM_001017475.1	LOC497938	NP_001017475.1	ILMN_1530468	2510722	S	125	TCATCATTCTTGTCAACATCAGCATCAATGTGACAACTGTGATATGGCAT	10	-	56640143-56640170:56640326-56640347	10q24	"Rattus norvegicus similar to RIKEN cDNA 4933402P03 (LOC497938), mRNA."
Miscellaneous function -> Other miscellaneous function protein	Sensory perception -> Hearing;Developmental processes -> Ectoderm development -> Neurogenesis	Rattus norvegicus	RefSeq	GI_55741680-S	ILMN_270364	ITM2B	NM_001006963.1	NM_001006963.1		290364	55741680	NM_001006963.1	Itm2b	NP_001006964.1	ILMN_1373266	1660341	S	1364	GCCGATAGCCCTGCTGCCTAGCCTGTTAGCATTTGCGGTCACCTTCTCAT	15	-	54005477-54005526	15p11	"Rattus norvegicus integral membrane protein 2B (Itm2b), mRNA."	"The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence ISS]; A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence ISS]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]"	"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence ISS]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]"	MGC94644	MGC94644
Miscellaneous function	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62642522-S	ILMN_276832	ZDHHC6	NM_001037652.1	NM_001037652.1		361771	83320089	NM_001037652.1	Zdhhc6	NP_001032741.1	ILMN_1364885	7050070	S	1235	GGAGTCCCTGAAGGAGATGGACTTGAGTGGCCAATACGAGAGGGCTGTCA				1q55	"Rattus norvegicus zinc finger, DHHC domain containing 6 (Zdhhc6), mRNA."			Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC125041	MGC125041
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_31342052-S	ILMN_287242	TP53INP1	NM_181084.2	NM_181084.2		297822	31342052	NM_181084.2	Tp53inp1	NP_851598.1	ILMN_1357575	510068	S	731	CAGAAATGGCCTCCGTCGCCAGAACCTTACCAGGGATTGCCACACTCGAC	5	+	25014011-25014060	5q13	"Rattus norvegicus tumor protein p53 inducible nuclear protein 1 (Tp53inp1), mRNA."				Stinp	Stinp
Select regulatory molecule -> G-protein modulator -> Other G-protein modulator	Signal transduction -> Intracellular signaling cascade;Cell cycle -> Cell cycle control	Rattus norvegicus	RefSeq	GI_62643739-S	ILMN_62394	IQGAP3_PREDICTED	XM_227396.4	XM_227396.4		310621	109465022	XM_227396.4	Iqgap3_predicted	XP_227396.3	ILMN_1361765	1570286	S	5342	CCCCAGCAACCTCTTACCCCTCATCACATCCCAGTATCTGACTTGGGTGC	2	+	180198331-180198380	2q34	"PREDICTED: Rattus norvegicus IQ motif containing GTPase activating protein 3 (predicted) (Iqgap3_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47575948-S	ILMN_272654	OLR1496	NM_001000716.1	NM_001000716.1		404968	47575948	NM_001000716.1	Olr1496	NP_001000716.1	ILMN_1368031	5290088	S	234	GCTGCTGCAGAACATGAAGAGCCAGGACACATCCATTCCCTATGGAGGCT	10	-	60965706-60965755	10q24	"Rattus norvegicus olfactory receptor 1496 (Olr1496), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors [goid 7608] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus [goid 50896] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47577390-S	ILMN_292017	OLR701	NM_001000627.1	NM_001000627.1		404819	47577390	NM_001000627.1	Olr701	NP_001000627.1	ILMN_1353605	1340369	S	428	TGTTGTTGGCCTGGTTTGGGGGTTTCTTGCACGCTGTAGTCAAACTCCTA	3	-	73812308-73812357	3q24	"Rattus norvegicus olfactory receptor 701 (Olr701), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	"Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]; Interacting selectively with any mono-, di- or trisaccharide carbohydrate [goid 5529] [evidence IEA]"	Olr701	Olr701
Nucleic acid binding -> Chromatin/chromatin-binding protein;Hydrolase -> Deacetylase	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Nucleoside, nucleotide and nucleic acid metabolism -> Chromatin packaging and remodeling	Rattus norvegicus	RefSeq	GI_56605811-S	ILMN_281197	SIRT2	NM_001008368.1	NM_001008368.1		361532	56605811	NM_001008368.1	Sirt2	NP_001008369.1	ILMN_1352401	630341	S	1853	ACCCTGCATAGGGGCTGGACCCTCCAAATATAACTTCACGCAGGGGCTGG	1	+	83895930-83895979	1q21	"Rattus norvegicus sirtuin (silent mating type information regulation 2 homolog) 2 (S. cerevisiae) (Sirt2), mRNA."	"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; Any protein complex that mediates changes in chromatin structure that result in transcriptional silencing [goid 5677] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence ISS]"	"Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin [goid 6342] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The removal of an acetyl group from a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid [goid 6476] [evidence IEA]; The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division [goid 7049] [evidence IEA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IEA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of striated muscle development [goid 45843] [evidence ISS]; The process resulting in the physical partitioning and separation of a cell into daughter cells [goid 51301] [evidence IEA]"	"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the removal of one or more acetyl groups from a histone, requiring NAD [goid 17136] [evidence IEA]; Catalysis of the removal of one or more acetyl groups from a histone, requiring NAD [goid 17136] [evidence ISS]; Interacting selectively with the enzyme histone acetyltransferase [goid 35035] [evidence ISS]; Interacting selectively with the enzyme histone deacetylase [goid 42826] [evidence ISS]; Catalysis of the reaction: N-acetyl(alpha-tubulin) + H2O = alpha-tubulin + acetate [goid 42903] [evidence ISS]; Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation [goid 43130] [evidence ISS]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IEA]"	MGC105900	MGC105900
Nucleic acid binding -> Helicase -> RNA helicase	Nucleoside, nucleotide and nucleic acid metabolism	Rattus norvegicus	RefSeq	GI_62666531-S	ILMN_58256	DDX3X	XM_228701.4	XM_228701.4		317335	109510437	XM_228701.4	Ddx3x	XP_228701.4	ILMN_2038837	6980754	S	2216	AGGGAGCTCAAGGTCACAAGTAAAGATGAAAGGAACAATCAGCAGCCCTG	X	-	21497438-21497487	Xq12	"PREDICTED: Rattus norvegicus DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked (Ddx3x), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_56090234-S	ILMN_274939	UBAC1	NM_001007742.1	NM_001007742.1		362087	56090234	NM_001007742.1	Ubac1	NP_001007743.1	ILMN_1365570	5080400	S	1477	GCCTGGATCACAGCTTCAGTGACTCTCCTTTCCTGACCTAACGGCTTGTC	3	-	4179241-4179290	3p13	"Rattus norvegicus UBA domain containing 1 (Ubac1), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC94349	MGC94349
Select regulatory molecule -> Kinase modulator	Signal transduction -> Intracellular signaling cascade	Rattus norvegicus	RefSeq	GI_11559993-S	ILMN_268148	PIK3R3	NM_022213.1	NM_022213.1		60664	11559993	NM_022213.1	Pik3r3	NP_071549.1	ILMN_1358018	1980095	S	1087	GTGAACCGAGTACAGGCAGAGGACCTGCTTTATGGGAAGCCAGACGGTGC	5	+	136559272-136559321	5q36	"Rattus norvegicus phosphoinositide-3-kinase, regulatory subunit 3 (gamma) (Pik3r3), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A complex containing a heterodimer of a catalytic subunit and a regulatory (adaptor) subunit of any phosphoinositide 3-kinase (PI3K) [goid 5942] [evidence ISS]; A complex containing a heterodimer of a catalytic subunit and a regulatory (adaptor) subunit of any phosphoinositide 3-kinase (PI3K) [goid 5942] [evidence IEA]"	The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence ISS]; The series of molecular signals generated as a consequence of the insulin receptor binding to insulin [goid 8286] [evidence IEA]	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Modulates the activity of the enzyme 1-phosphatidylinositol-3-kinase activity [goid 46935] [evidence IDA]; Modulates the activity of the enzyme 1-phosphatidylinositol-3-kinase activity [goid 46935] [evidence ISS]; Modulates the activity of the enzyme 1-phosphatidylinositol-3-kinase activity [goid 46935] [evidence IEA]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_16758217-S	ILMN_298048	HAMP	NM_053469.1	NM_053469.1		84604	16758217	NM_053469.1	Hamp	NP_445921.1	ILMN_1354289	4850500	S	166	GACAGTGCGCTGCTGATGCTGAAGCGAAGGAAGCGAGACACCAACTTCCC	1	-	85978264-85978312:85978396-85978396	1q21	"Rattus norvegicus hepcidin antimicrobial peptide (Hamp), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IDA]; The region that lies just beneath the plasma membrane on the apical edge of a cell [goid 45179] [evidence IDA]"	"The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence IDA]; The regulation of the levels, transport, and metabolism of iron ions within a cell or between a cell and its external environment [goid 6879] [evidence IEA]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence ISS]; Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism [goid 42742] [evidence IEA]; Reactions triggered in response to the presence of a fungus that act to protect the cell or organism [goid 50832] [evidence ISS]"	"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]"	Hepc	Hepc
Transporter -> Other transporter	Sulfur metabolism -> Other sulfur metabolism;Transport -> Ion transport -> Anion transport;Transport -> Extracellular transport and import	Rattus norvegicus	RefSeq	GI_62648686-S	ILMN_58931	SLC26A7_PREDICTED	XM_232793.4	XM_232793.4		297910	109474714	XM_232793.4	Slc26a7_predicted	XP_232793.3	ILMN_1353252	7100133	S	2040	GAGCAAGGACACTGACCACAGTGAAGTCTGAGGTCCACGCATTGAAATGC	5	-	28899900-28899919:28899920-28899949	5q13	"PREDICTED: Rattus norvegicus solute carrier family 26, member 7 (predicted) (Slc26a7_predicted), mRNA."
Miscellaneous function -> Transmembrane receptor regulatory/adaptor protein	Neuronal activities;Developmental processes	Rattus norvegicus	RefSeq	GI_27465606-S	ILMN_272232	DLGAP3	NM_173138.1	NM_173138.1		286923	27465606	NM_173138.1	Dlgap3	NP_775161.1	ILMN_1369126	3190687	S	2807	CCTGGAGCCTAAGGAGGAGAAGAAGGTCCCTCCGCCGATACCAAAGAAGC	5	+	146683966-146683978:146684593-146684629	5q36	"Rattus norvegicus discs, large (Drosophila) homolog-associated protein 3 (Dlgap3), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; Protrusion from a dendrite. Spines are specialised subcellular compartments involved in the synaptic transmission. They are linked to the dendritic shaft by a restriction. Because of their bulb shape, they function as a biochemical and an electrical compartment. Spine remodeling is though to be involved in synaptic plasticity [goid 43197] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence ISS]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IDA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]"	Any process that mediates the transfer of information from one cell to another [goid 7267] [evidence IEA]	Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]	SAPAP3; Dap3; DAP-3	SAPAP3; Dap3; DAP-3
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62641198-S	ILMN_51422	LOC499255	XM_574549.1	XM_574549.1		499255	62641198	XM_574549.1	LOC499255	XP_574549.1	ILMN_1352678	3450600	S	2213	ATGTCTTGGCCTGATCTCTCACGAACAGAAACACTGGCTGGGGCTGGGGG				1q35	"PREDICTED: Rattus norvegicus similar to TSG118.1 (LOC499255), mRNA."
Cell adhesion molecule -> Cadherin	Signal transduction -> Cell communication -> Cell adhesion-mediated signaling;Cell adhesion;Developmental processes -> Ectoderm development -> Neurogenesis	Rattus norvegicus	RefSeq	GI_62664785-S	ILMN_295747	CDH11	XM_001059464.1	XM_001059464.1		84407	109507685	XM_001059464.1	Cdh11	XP_001059464.1	ILMN_1370705	580707	S	3926	AGACTTGATGGCCCGCCTTGAGCATTGTGGCGTTGAAGGGGTTCATAGTC	19	+	2381697-2381746	19p14	"PREDICTED: Rattus norvegicus cadherin 11 (Cdh11), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"	The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA]; The attachment of one cell to another cell via adhesion molecules [goid 16337] [evidence TAS]	Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47577502-S	ILMN_288930	OLR48	NM_001000122.1	NM_001000122.1		293188	47577502	NM_001000122.1	Olr48	NP_001000122.1	ILMN_1373338	3870278	S	789	TATTCACCGGTTTGGCCACCAGGTGCCTCCTCCAATCCACACTTTGCTGG	1	+	160276282-160276331	1q32	"Rattus norvegicus olfactory receptor 48 (Olr48), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr48	Olr48
		Rattus norvegicus	RefSeq	GI_62659877-S	ILMN_53154	LOC289332	XM_237909.2	XM_237909.2		289332	62659877	XM_237909.2	LOC289332	XP_237909.1	ILMN_1354045	6400121	S	489	GCTACAGAATCTACAAAGGAGGTGCCAGTGAAAGCTGTGAACAAGCCGGG					"PREDICTED: Rattus norvegicus hypothetical LOC289332 (LOC289332), mRNA."
		Rattus norvegicus	RefSeq	GI_62666522-S	ILMN_57797	LOC501517	XM_576918.1	XM_576918.1		501517	62666522	XM_576918.1	LOC501517	XP_576918.1	ILMN_1371945	6510048	S	499	GGTGACAGCAAATGTTGGCGAGGATGTGGAAAAAGAGGAACACTCCTCCT					"PREDICTED: Rattus norvegicus similar to LRRGT00078 (LOC501517), mRNA."
		Rattus norvegicus	RefSeq	GI_62658241-S	ILMN_57782	LOC498117	XM_573329.1	XM_573329.1		498117	62658241	XM_573329.1	LOC498117	XP_573329.1	ILMN_1373036	1660711	S	148	GCTTTTCGGTGTTTTTATCGGAGAGTCCGGCAGAGCCCTAGCTCCTCCAG					"PREDICTED: Rattus norvegicus similar to mdgl-1 (LOC498117), mRNA."
Nucleic acid binding -> Histone	Nucleoside, nucleotide and nucleic acid metabolism -> Chromatin packaging and remodeling	Rattus norvegicus	RefSeq	GI_27716762-S	ILMN_58756	LOC298850	XM_216657.1	XM_216657.1		298850	27716762	XM_216657.1	LOC298850	XP_216657.1	ILMN_1365185	7040100	S	363	GGGGCAGGGATGAGTGAAAGCAGAGAGGAAGACATCCCAGAATTCCACAG				6q14	"PREDICTED: Rattus norvegicus similar to centromere protein A (LOC298850), mRNA."
Protease -> Metalloprotease	Protein metabolism and modification -> Proteolysis;Signal transduction -> Cell communication -> Ligand-mediated signaling;Developmental processes -> Mesoderm development -> Skeletal development	Rattus norvegicus	RefSeq	GI_62661702-S	ILMN_56691	BMP1	XM_573814.2	XM_573814.2		83470	109501726	XM_573814.2	Bmp1	XP_573814.1	ILMN_1354950	3140465	S	4083	GAGCTGTGGTGGGGAGTTGGAGAAGAGGGAGTGGATAAGTAAGACAGGGC	15	-	50878209-50878258	15p11	"PREDICTED: Rattus norvegicus bone morphogenetic protein 1, transcript variant 2 (Bmp1), mRNA."		The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence IEA]; The hydrolysis of a peptide bond or bonds within a protein [goid 6508] [evidence ISS]	"Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 4222] [evidence IEA]; Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence ISS]"
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576566-S	ILMN_298295	OLR1646	NM_001000103.1	NM_001000103.1		290202	47576566	NM_001000103.1	Olr1646	NP_001000103.1	ILMN_1370188	6100152	S	777	CCGGTCTGGCAAGAATGGACAGGGGGAGGATCATAACAAGGTGGTGGCAC	15	-	32344251-32344300	15p13	"Rattus norvegicus olfactory receptor 1646 (Olr1646), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1646	Olr1646
		Rattus norvegicus	RefSeq	GI_62650187-S	ILMN_68375	LOC500599	XM_575973.1	XM_575973.1		500599	62650187	XM_575973.1	LOC500599	XP_575973.1	ILMN_1351788	4150706	S	0	GGCCCAGGTCTGACGGAGGTGGCTGCTGCAACTACACGTTAAAGGCTCCG					"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9430015G10 (LOC500599), mRNA."
		Rattus norvegicus	RefSeq	GI_62664009-S	ILMN_51192	LOC497717	XM_579724.1	XM_579724.1		497717	62664009	XM_579724.1	LOC497717	XP_579724.1	ILMN_1359990	1170056	S	7964	GCGCAGCAAGAGAAACGACCATCAGTTCACACTACGTCCAGAGGATAAGA					"PREDICTED: Rattus norvegicus hypothetical gene supported by NM_183331 (LOC497717), mRNA."
		Rattus norvegicus	RefSeq	GI_62665435-I	ILMN_48662	ABCB10_PREDICTED	XM_574253.1	XM_574253.1		361439	62665435	XM_574253.1	Abcb10_predicted	XP_574253.1	ILMN_1375315	50746	S	780	ACTCTCCCTGCAGTCACCGGCAGTCAGTCCTGCCACAAACCAGCAAGGCT				19q12	"PREDICTED: Rattus norvegicus ATP-binding cassette, sub-family B (MDR/TAP), member 10 (predicted) (Abcb10_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62665141-S	ILMN_292401	TRADD	XM_001071920.1	XM_001071920.1		246756	109508658	XM_001071920.1	Tradd	XP_001071920.1	ILMN_1372817	4760300	S	1411	AAGGGGCAGGGTTTTGGGTACAGTAGGCTCTGTTGGGGCCTTGAGGAAGA				19q11	"PREDICTED: Rattus norvegicus TNFRSF1A-associated via death domain (Tradd), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups [goid 43234] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]"	"A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface [goid 6915] [evidence TAS]; The conversion of proteins that induce or sustain apoptosis to an active form [goid 8633] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IEA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of nonidentical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51291] [evidence IPI]; Any process that activates or increases the frequency, rate or extent of hair follicle development [goid 51798] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of hair follicle development [goid 51798] [evidence ISS]"	"Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]; Interacting selectively with an intermediate filament, a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of higher eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space [goid 19215] [evidence ISS]; Interacting selectively with an intermediate filament, a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of higher eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space [goid 19215] [evidence IEA]; Interacting selectively with any protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 32403] [evidence IPI]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]"
		Rattus norvegicus	RefSeq	GI_62649899	ILMN_294056	RGD1562511_PREDICTED	XR_008709.1	XR_008709.1		500571	109477551	XR_008709.1	RGD1562511_predicted		ILMN_1649733	5900168	S	2706	GGCCAGCCAGATCCTCAGCACGGACCCCATGAAGAGCCTCACTTATCACA				5q36	"PREDICTED: Rattus norvegicus similar to MmKIF17 (predicted) (RGD1562511_predicted), mRNA."
Hydrolase -> Esterase	Biological process unclassified	Rattus norvegicus	RefSeq	GI_51036668-S	ILMN_280447	ACOT8	NM_130756.2	NM_130756.2		170588	51036668	NM_130756.2	Acot8	NP_570112.2	ILMN_1370864	670673	S	1246	TGGTACATGGGCGGCTGTGGCGTCGGGATGGGGTCCTTGCTGTGACCTGT	3	-	155828386-155828435	3q42	"Rattus norvegicus acyl-CoA thioesterase 8 (Acot8), mRNA."	"A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence ISS]; A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2) [goid 5777] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]"	"The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group [goid 6637] [evidence IEA]; The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group [goid 6637] [evidence ISS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules [goid 7031] [evidence IEA]; The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group [goid 6637] [evidence IEA]"	"Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion [goid 4091] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the reaction: acyl-CoA + H2O = corresponding fatty acid + CoA [goid 16291] [evidence IEA]; Catalysis of the reaction: acyl-CoA + H2O = corresponding fatty acid + CoA [goid 16291] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Catalysis of the reaction: choloyl-CoA + H2O = cholate + CoA [goid 33882] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the reaction: acyl-CoA + H2O = corresponding fatty acid + CoA [goid 16291] [evidence IEA]"	Pte1	Pte1
Nucleic acid binding -> Nuclease -> Endoribonuclease;Select regulatory molecule -> Other enzyme regulator -> Other enzyme inhibitor;Hydrolase	Nucleoside, nucleotide and nucleic acid metabolism -> RNA catabolism;Developmental processes -> Mesoderm development -> Angiogenesis	Rattus norvegicus	RefSeq	GI_62661280-A	ILMN_287775	ANG1	NM_001006992.1	NM_001006992.1		305843	55742835	NM_001006992.1	Ang1	NP_001006993.1	ILMN_1376323	4570092	S	212	ATGGCAACAAGGGCAGCATCAAGGCCATCTGTGGCGCGAATGGAAGCCCT	15	+	27083300-27083349	15p14	"Rattus norvegicus angiogenin, ribonuclease A family, member 1 (Ang1), mRNA."	"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; A thin sheet of proteoglycans and glycoproteins, especially laminin, secreted by cells as an extracellular matrix [goid 5605] [evidence ISS]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [evidence ISS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence IDA]; A stable heterodimer of angiogenin and placental ribonuclease inhibitor; interaction between angiogenin and PRI prevents angiogenin binding to its receptor to stimulate angiogenesis [goid 32311] [evidence ISS]"	"Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels [goid 1525] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence ISS]; The chemical reactions and pathways resulting in the formation of diacylglycerol, a glycerol molecule substituted on the 1 and 2 hydroxyl groups with long chain fatty acyl residues [goid 6651] [evidence ISS]; The initiation of the activity of the inactive enzyme phospolipase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7202] [evidence ISS]; The initiation of the activity of the inactive enzyme phospolipase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7202] [evidence IDA]; Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The synthesis of ribosomal RNA (rRNA), any RNA that forms part of the ribosomal structure, from a DNA template [goid 9303] [evidence ISS]; Assembly of actin filaments by the addition of actin monomers to a filament [goid 30041] [evidence ISS]; Any process that initiates the activity of the inactive enzyme phospholipase A2 [goid 32431] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of smooth muscle cell proliferation [goid 48662] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the regulated release of a protein from a cell or group of cells [goid 50714] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level [goid 1666] [evidence ISS]; Any process that activates or increases the rate or extent of endothelial cell proliferation [goid 1938] [evidence ISS]"	"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with monomeric or multimeric forms of actin, including actin filaments [goid 3779] [evidence ISS]; Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks [goid 4519] [evidence IEA]; Catalysis of the endonucleolytic cleavage of RNA to 3'-phosphomononucleotides and 3'-phosphooligonucleotides ending in C-P or U-P with 2',3'-cyclic phosphate intermediates [goid 4522] [evidence IEA]; Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA [goid 4540] [evidence ISS]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence ISS]; Interacting selectively with copper (Cu) ions [goid 5507] [evidence ISS]; Interacting selectively with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha1-4-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues [goid 8201] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]"
Synthase and synthetase -> Synthase;Transferase;Lyase -> Other lyase	Lipid, fatty acid and steroid metabolism -> Steroid metabolism -> Cholesterol metabolism;Coenzyme and prosthetic group metabolism -> Coenzyme metabolism	Rattus norvegicus	RefSeq	GI_8393537-A	ILMN_264703	HMGCS1	NM_017268.1	NM_017268.1		29637	8393537	NM_017268.1	Hmgcs1	NP_058964.1	ILMN_1376480	630017	S	3186	TGGGCAAGCCTCGCAATGTTGGCACGGAGCGTTAACCACACCTTACTAAT	2	+	51754499-51754548	2q16	"Rattus norvegicus 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble) (Hmgcs1), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence TAS]"	"The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues [goid 8299] [evidence IEA]"	"Catalysis of the reaction: acetyl-CoA + H2O + acetoacetyl-CoA = (S)-3-hydroxy-3-methylglutaryl-CoA + CoA [goid 4421] [evidence ISS]; Catalysis of the reaction: acetyl-CoA + H2O + acetoacetyl-CoA = (S)-3-hydroxy-3-methylglutaryl-CoA + CoA [goid 4421] [evidence TAS]; Catalysis of the reaction: acetyl-CoA + H2O + acetoacetyl-CoA = (S)-3-hydroxy-3-methylglutaryl-CoA + CoA [goid 4421] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62647767-S	ILMN_269033	LOC500251	NM_001025047.1	NM_001025047.1		500251	68163526	NM_001025047.1	LOC500251	NP_001020218.1	ILMN_1368239	1190717	S	1224	CTACTGTGAGACAGCCTAAGAGGGCTAGCTACCATGGCTCCCTATGGGCC				4q34	"Rattus norvegicus hypothetical protein LOC500251 (LOC500251), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_46485381-S	ILMN_279763	BHLHB9	NM_207611.1	NM_207611.1		317407	46485381	NM_207611.1	Bhlhb9	NP_997494.1	ILMN_1355528	5420528	S	2602	TGTCCCCTACCAGGTTAACAGCTATTGGCTTCCTTCACATTCAGGTTGAC	X	+	123151748-123151797	Xq35	"Rattus norvegicus basic helix-loop-helix domain containing, class B, 9 (Bhlhb9), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"		"The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]"	p60TRP	p60TRP
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_11560035-S	ILMN_275640	NMU	NM_022239.1	NM_022239.1		63887	11560035	NM_022239.1	Nmu	NP_071575.1	ILMN_1366174	6450162	S	558	ACCAGGGTCCTGTAGCTCCAAGTGGGGGATTCTTTTTATTTAGGCCACGC	14	+	34140113-34140156:34141689-34141694	14p11	"Rattus norvegicus neuromedin U (Nmu), mRNA."	"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters [goid 43195] [evidence IDA]"	"The regulated release of gastric acid (hydrochloric acid) by parietal or oxyntic cells during digestion [goid 1696] [evidence IMP]; Any process that modulates the frequency, rate or extent of smooth muscle contraction [goid 6940] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IMP]; The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor [goid 7218] [evidence IDA]; A change in state or activity of the organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical daylength'. The critical daylength varies between species [goid 9648] [evidence IEP]; The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances [goid 19233] [evidence IMP]; The specific actions or reactions of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue [goid 42755] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of smooth muscle contraction [goid 45987] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells [goid 46887] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse [goid 50806] [evidence IMP]"	Interacting selectively with one or more specific sites on a neuromedin U receptor [goid 42922] [evidence IDA]
		Rattus norvegicus	RefSeq	GI_62647798-S	ILMN_60979	LOC502849	XM_578349.1	XM_578349.1		502849	62647798	XM_578349.1	LOC502849	XP_578349.1	ILMN_1359919	6510593	S	410	GCCCTTCAGTCAGCATAAGAAACTGCTGCACAAGCCCAGGCATCAGAAGG					"PREDICTED: Rattus norvegicus similar to ribosomal protein L6 (LOC502849), mRNA."
Transferase -> Transaminase	Amino acid metabolism	Rattus norvegicus	RefSeq	GI_61557148-S	ILMN_298269	CCBL1	NM_001013164.2	NM_001013164.2		311844	71896546	NM_001013164.2	Ccbl1	NP_001013182.2	ILMN_1357645	1400538	S	1475	CCAGGCCATGGATGAGAGACTGCGCAAGTGGAAAGAGCTCCAACCCTGAG	3	-	9195779-9195779:9195780-9195828	3p12	"Rattus norvegicus cysteine conjugate-beta lyase 1 (Ccbl1), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]"	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]	"Catalysis of the reaction: L-kynurenine + 2-oxoglutarate = 4-(2-aminophenyl)-2,4-dioxobutanoate + L-glutamate [goid 16212] [evidence IEA]; Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring [goid 16829] [evidence IEA]; Catalysis of the reaction: S-adenosyl-L-methionine = 1-aminocyclopropane-1-carboxylate + methylthioadenosine [goid 16847] [evidence IEA]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Catalysis of the reaction: phenylpyruvate + L-glutamine = L-phenylalanine + 2-keto-glutaramate [goid 47316] [evidence IEA]; Catalysis of the reaction: RS-CH2-CH(NH3+)COO- = RSH + NH3 + pyruvate [goid 47804] [evidence IEA]"	KatI; Gtk	KatI; Gtk
Signaling molecule -> Cytokine -> Interleukin	Signal transduction -> Cell surface receptor mediated signal transduction -> Cytokine and chemokine mediated signaling pathway;Signal transduction -> Cell communication -> Ligand-mediated signaling;Immunity and defense -> T-cell mediated immunity -> MHCII-mediated immunity;Immunity and defense -> B-cell- and antibody-mediated immunity	Rattus norvegicus	RefSeq	GI_62644690-S	ILMN_280071	IL1F8_PREDICTED	XM_001077066.1	XM_001077066.1		362076	109469509	XM_001077066.1	Il1f8_predicted	XP_001077066.1	ILMN_1374886	5900364	S	279	CTGCCTCTTCTGTGCTGAGATCGAGGGCAAACCGACTTTGCAGCTTAAGG				3p13	"PREDICTED: Rattus norvegicus interleukin 1 family, member 8 (predicted) (Il1f8_predicted), mRNA."
Oxidoreductase -> Peroxidase	Immunity and defense -> Granulocyte-mediated immunity	Rattus norvegicus	RefSeq	GI_62656750-S	ILMN_263672	EPX_PREDICTED	XM_001081178.1	XM_001081178.1		303414	109491605	XM_001081178.1	Epx_predicted	XP_001081178.1	ILMN_1362714	540672	S	1937	CAAGACGCCCGACAACATTGACATCTGGGTGGGAGCCATAGCAGAGCCTC				10q26	"PREDICTED: Rattus norvegicus eosinophil peroxidase (predicted) (Epx_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_18959259-S	ILMN_279194	SLC40A1	NM_133315.1	NM_133315.1		170840	18959259	NM_133315.1	Slc40a1	NP_579849.1	ILMN_1351485	2690161	S	2029	AGCTGTGGCCCCTGTTACTAGATTTGTGGAGAGCATGTGTGCTTATTTTG	9	-	44978603-44978652	9q22	"Rattus norvegicus solute carrier family 39 (iron-regulated transporter), member 1 (Slc40a1), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence NAS]; The directed movement of iron (Fe) ions into, out of, within or between cells [goid 6826] [evidence IEA]"	Catalysis of the transfer of iron (Fe) ions from one side of a membrane to the other [goid 5381] [evidence NAS]; Catalysis of the transfer of iron (Fe) ions from one side of a membrane to the other [goid 5381] [evidence IEA]; Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]	Fpn1; Slc11a3; Slc39a1	Fpn1; Slc11a3; Slc39a1
Kinase -> Protein kinase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation	Rattus norvegicus	RefSeq	GI_16758317-S	ILMN_281838	PDK4	NM_053551.1	NM_053551.1		89813	16758317	NM_053551.1	Pdk4	NP_446003.1	ILMN_1364094	6520026	S	1368	CGGGATCAAAGTGGGTCTACGGCAGTGCTGCTTCGTGAATGTGTGTGGAC	4	-	30235303-30235352	4q13	"Rattus norvegicus pyruvate dehydrogenase kinase, isozyme 4 (Pdk4), mRNA."	"A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]"	"The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]; The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate [goid 6086] [evidence TAS]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IMP]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence IDA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide [goid 16310] [evidence IEA]; The posttranslational phosphorylation of peptidyl-histidine to form peptidyl-1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine) or peptidyl-3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine) [goid 18106] [evidence IEA]"	"Catalysis of the phosphorylation of a specific transcription regulator in response to the presence of a particular signal substance outside the cell [goid 155] [evidence IEA]; Catalysis of the reaction: ATP + pyruvate dehydrogenase (acetyl-transferring) = ADP + pyruvate dehydrogenase (acetyl-transferring) phosphate [goid 4740] [evidence IDA]; Catalysis of the reaction: ATP + pyruvate dehydrogenase (acetyl-transferring) = ADP + pyruvate dehydrogenase (acetyl-transferring) phosphate [goid 4740] [evidence IDA]; Catalysis of the reaction: ATP + pyruvate dehydrogenase (acetyl-transferring) = ADP + pyruvate dehydrogenase (acetyl-transferring) phosphate [goid 4740] [evidence IMP]; Catalysis of the reaction: ATP + pyruvate dehydrogenase (acetyl-transferring) = ADP + pyruvate dehydrogenase (acetyl-transferring) phosphate [goid 4740] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IDA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IMP]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule [goid 16301] [evidence IEA]"
		Rattus norvegicus	RefSeq	GI_62638308-S	ILMN_65659	BCLAF1	XM_214967.4	XM_214967.4		293017	109457610	XM_214967.4	Bclaf1	XP_214967.4	ILMN_1355583	4070671	S	5352	GATGGCTAAACGATTCTTCCTCAGTGTGGTGTATATTTCAACAGGGACCC	1	+	15634116-15634165	1p12	"PREDICTED: Rattus norvegicus BCL2-associated transcription factor 1 (Bclaf1), mRNA."		"Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [evidence ISS]"	Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]
Nucleic acid binding -> Other DNA-binding protein	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_62657471-S	ILMN_284792	RGD1306500_PREDICTED	XM_001081783.1	XM_001081783.1		360674	109492375	XM_001081783.1	RGD1306500_predicted	XP_001081783.1	ILMN_1348957	540035	S	7344	CGGCCCCGGTGTTAGCAAATCCAAGTTCAAGCGTAAGGAGGCCCTGAGCT					"PREDICTED: Rattus norvegicus similar to KIAA1447 protein (predicted) (RGD1306500_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62660516-S	ILMN_55484	LOC363318	XM_343658.2	XM_343658.2		363318	62660516	XM_343658.2	LOC363318	XP_343659.2	ILMN_1355747	7000156	S	1240	CACCAATGCTCACAAGAAAGGCTTTGGTTAAAGAAGGGAGGTACTGAGAC					"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930555G01 (LOC363318), mRNA."
		Rattus norvegicus	RefSeq	GI_62642622-S	ILMN_52517	LOC499394	XM_574710.1	XM_574710.1		499394	62642622	XM_574710.1	LOC499394	XP_574710.1	ILMN_1369308	3610066	S	586	GATCCTTCCCTTTGCTCAGGTTTCCTGGGAGCTGGAGGGGGTTTGAGTGT					"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6530406M24 (LOC499394), mRNA."
		Rattus norvegicus	RefSeq	GI_62651616-S	ILMN_50535	LOC299598	XM_216840.2	XM_216840.2		299598	62651616	XM_216840.2	LOC299598	XP_216840.1	ILMN_1369993	3940408	S	2678	GTCCTTTGACTTTGAGGACAGGATCACATGAGACAGACTGGTGATATTGC					"PREDICTED: Rattus norvegicus hypothetical LOC299598 (predicted) (LOC299598), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62663601-S	ILMN_289484	HIST1H2BN_PREDICTED	XM_001061411.1	XM_001061411.1		291157	109505960	XM_001061411.1	Hist1h2bn_predicted	XP_001061411.1	ILMN_1360331	4560647	S	359	CCAAGTACACCAGCTCCAAGGATGTCTGGCAAGTGTATTGTCCTGGCCTG				17q11	"PREDICTED: Rattus norvegicus histone 1, H2bn (predicted) (Hist1h2bn_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62645770-S	ILMN_52010	LOC497779	XM_579526.1	XM_579526.1		497779	62645770	XM_579526.1	LOC497779	XP_579526.1	ILMN_1351122	3120053	S	2568	GTATTTCATGGATGACGCAGAAAAAACATACGTGCCCATGACTGAGGACA					"PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031736 (LOC497779), mRNA."
Phosphatase -> Protein phosphatase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Signal transduction -> Intracellular signaling cascade -> MAPKKK cascade;Signal transduction -> Intracellular signaling cascade -> Other intracellular signaling cascade	Rattus norvegicus	RefSeq	GI_14861863-S	ILMN_275498	PPM1B	NM_033096.1	NM_033096.1		24667	14861863	NM_033096.1	Ppm1b	NP_149087.1	ILMN_1354931	7000022	S	3062	ACTACTTGTCCCTTTACTGGGGGTTTGGGGGTTGTTAAAAGATGGGGAGG	6	+	8373600-8373649	6q12	"Rattus norvegicus protein phosphatase 1B, magnesium dependent, beta isoform (Ppm1b), mRNA."	"A complex, normally consisting of a catalytic and a regulatory subunit, which catalyzes the removal of a phosphate group from a serine or threonine residue of a protein [goid 8287] [evidence IEA]; A complex, normally consisting of a catalytic and a regulatory subunit, which catalyzes the removal of a phosphate group from a serine or threonine residue of a protein [goid 8287] [evidence IEA]"	The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]; The process of removing one or more phosphoric residues from a protein [goid 6470] [evidence IEA]	"Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate [goid 4722] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]"	Pp2c2	Pp2c2
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47606356-S	ILMN_274598	OLR77	NM_001001287.1	NM_001001287.1		405907	47606356	NM_001001287.1	Olr77	NP_001001287.1	ILMN_1357217	4010358	S	686	GCTCTGTCCTCACTATTGCCTCCTCTGAAGAACAGCACAAGGCCTTCAGT	1	+	160853782-160853831	1q32	"Rattus norvegicus olfactory receptor 77 (Olr77), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr77	Olr77
		Rattus norvegicus	RefSeq	GI_62639918-S	ILMN_69756	LOC294435	XM_228202.3	XM_228202.3		294435	62639918	XM_228202.3	LOC294435	XP_228202.3	ILMN_1367629	2370152	S	3605	GTTCCATACTCAGTGCCTCTGCAAGCCGTCCTTGTCCGGTATCCTCAGGC					"PREDICTED: Rattus norvegicus similar to Aldo-keto reductase family 1, member B8 (LOC294435), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62648695-S	ILMN_296379	LOC679161	XM_001054250.1	XM_001054250.1		679161	109476158	XM_001054250.1	LOC679161	XP_001054250.1	ILMN_1356677	1580020	S	1222	CCTCTCTGGTTAAAGGCAGTCAACCGAATCCCAGTGGCTCTTCCTTCTAC					"PREDICTED: Rattus norvegicus similar to transmembrane protein 64 (LOC679161), mRNA."
		Rattus norvegicus	RefSeq	GI_62658159-I	ILMN_53589	ALG3_PREDICTED	XM_573315.1	XM_573315.1		287983	62658159	XM_573315.1	Alg3_predicted	XP_573315.1	ILMN_1375611	1500672	S	103	AGGGTTTCATCAATGGGCCGGGTGGGTACCAGGCGGATGACCCTGACCTC				11q23	"PREDICTED: Rattus norvegicus asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase) (predicted) (Alg3_predicted), mRNA."
Nucleic acid binding -> mRNA processing factor	Nucleoside, nucleotide and nucleic acid metabolism -> Pre-mRNA processing	Rattus norvegicus	RefSeq	GI_20806132-S	ILMN_283117	RBM16	NM_139094.1	NM_139094.1		245926	20806132	NM_139094.1	Rbm16	NP_620794.1	ILMN_1364407	3990592	S	4479	GGTGTGGCACATCTCCATATCTCTAGGCTGCTGCAGGGTTTTAAGGTGAC	1	+	38173356-38173405	1p11	"Rattus norvegicus RNA binding motif protein 16 (Rbm16), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IMP]"	"The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs) [goid 6366] [evidence IMP]; Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IMP]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with any nucleic acid [goid 3676] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IMP]"
		Rattus norvegicus	RefSeq	GI_62664731	ILMN_58067	LOC498896	XM_574183.1	XM_574183.1		498896	62664731	XM_574183.1	LOC498896	XP_574183.1	ILMN_1649767	380546	S	754	AAGAACCCAGATGCCCTTCAACAGAGGAATGGATACAGAAAATGTGGTAT					"PREDICTED: Rattus norvegicus similar to ORF2 consensus sequence encoding endonuclease and reverse transcriptase minus RNaseH (LOC498896), mRNA."
		Rattus norvegicus	RefSeq	GI_62655602-S	ILMN_61445	LOC501672	XM_577069.1	XM_577069.1		501672	62655602	XM_577069.1	LOC501672	XP_577069.1	ILMN_1358967	4570438	S	834	ACAGACAGAACCTGGAAATGTGGTTCAGGTGGGCATTGTGGGCAGGACAG					"PREDICTED: Rattus norvegicus similar to Abcc6 protein (LOC501672), mRNA."
		Rattus norvegicus	RefSeq	GI_62646946-S	ILMN_66026	LOC500063	XM_575417.1	XM_575417.1		500063	62646946	XM_575417.1	LOC500063	XP_575417.1	ILMN_1351687	630497	S	551	GGGGAGGATGAGTCTTGTGAGACTGCTGAGGAAGGCAACCCCCTTAAGCT					"PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC500063), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62664104-S	ILMN_270265	RGD1308160_PREDICTED	XM_001055112.1	XM_001055112.1		307556	109507004	XM_001055112.1	RGD1308160_predicted	XP_001055112.1	ILMN_1371805	1450446	S	2394	CTGTCAGCTGCAAAGAAAGCTGGGCCAGAAATGGCAAGAGTACTTCCGAC				18p12	"PREDICTED: Rattus norvegicus similar to Myosin heavy chain A (MHC A) (predicted) (RGD1308160_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576902-S	ILMN_281070	OLR806	NM_001000976.1	NM_001000976.1		405331	47576902	NM_001000976.1	Olr806	NP_001000976.1	ILMN_1363810	580139	S	870	CAGTCTGAGGAATAAGGAAGTCAAGGGTGCTTGGCAGAAACTACTCGGAA	4	+	70622924-70622973	4q23	"Rattus norvegicus olfactory receptor 806 (Olr806), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr806	Olr806
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_27673564-S	ILMN_293677	RGD1559808_PREDICTED	XM_001065275.1	XM_001065275.1		316158	109514116	XM_001065275.1	RGD1559808_predicted	XP_001065275.1	ILMN_1349763	1240619	S	21	GAAAAGGAGAAACAACGGTCGGACCAAAAAGGGCCGGGGTCATGTGCAGC				9q11	"PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S26 (predicted) (RGD1559808_predicted), mRNA."
Synthase and synthetase	Lipid, fatty acid and steroid metabolism -> Phospholipid metabolism;Immunity and defense -> Other immune and defense	Rattus norvegicus	RefSeq	GI_57164124-S	ILMN_289886	PLA2G7	NM_001009353.1	NM_001009353.1		301265	57164124	NM_001009353.1	Pla2g7	NP_001009353.1	ILMN_1366506	4760035	S	1426	TGATCAGTGGGACTGTCTGGTGGAGGGAGAGAACGAGAACCTCATCCCGG	9	-	13058284-13058333	9q12	"Rattus norvegicus phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) (Pla2g7), mRNA."	"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]; An enzyme complex composed of two catalytic alpha subunits, which form a catalytic dimer, and a non-catalytic, regulatory beta subunit; the catalytic dimer may be an alpha1/alpha1 or alpha2/alpha2 homodimer, or an alpha1/alpha2 heterodimer. Modulates the action of platelet-activating factor (PAF) [goid 8247] [evidence IEA]"	"Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]; The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 16042] [evidence IEA]"	"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine + H2O = 1-alkyl-sn-glycero-3-phosphocholine + acetate [goid 3847] [evidence IEA]; Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3 [goid 16787] [evidence IEA]"	MGC95107	MGC95107
Oxidoreductase -> Dehydrogenase;Oxidoreductase -> Reductase	Other metabolism	Rattus norvegicus	RefSeq	GI_55742812-S	ILMN_266486	BDH1	NM_053995.3	NM_053995.3		117099	55742812	NM_053995.3	Bdh1	NP_446447.2	ILMN_1357757	3990435	S	1370	GTGGTGAATGGTTTGGGCCTTCACAAATACAGGGCACTGGTGGGTGGCCC	11	-	71130758-71130807	11q22	"Rattus norvegicus 3-hydroxybutyrate dehydrogenase, type 1 (Bdh1), nuclear gene encoding mitochondrial protein, mRNA."	"A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]"	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]	"Catalysis of the reaction: (R)-3-hydroxybutanoate + NAD+ = acetoacetate + NADH + H+ [goid 3858] [evidence ISS]; Catalysis of the reaction: (R)-3-hydroxybutanoate + NAD+ = acetoacetate + NADH + H+ [goid 3858] [evidence TAS]; Catalysis of the reaction: (R)-3-hydroxybutanoate + NAD+ = acetoacetate + NADH + H+ [goid 3858] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]"	MGC94818; Bdh	MGC94818; Bdh
Chaperone -> Other chaperones	Protein metabolism and modification -> Protein folding;Immunity and defense -> Stress response	Rattus norvegicus	RefSeq	GI_54262175-S	ILMN_269645	HSPB8	NM_053612.2	NM_053612.2		113906	54262175	NM_053612.2	Hspb8	NP_446064.1	ILMN_1353138	1400270	S	1599	TGTCTTCAGGCAGCTCCACCAGGAACCAAGCAAAGGTCAGACAGCCTGGC	12	+	41421390-41421439	12q16	"Rattus norvegicus heat shock protein 8 (Hspb8), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence ISS]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]"	"A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) [goid 6950] [evidence IEA]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence ISS]; Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]	MGC72354; Cryac; Hsp22	MGC72354; Cryac; Hsp22
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_57527583-S	ILMN_265559	RGD1304567	NM_001009711.1	NM_001009711.1		362671	57527583	NM_001009711.1	RGD1304567	NP_001009711.1	ILMN_1369087	5900494	S	774	TAACTGAGCGCAAACTTGACATGGATGTCACTGGCACAGATGCCCGGCTC	5	+	170747309-170747358	5q36	"Rattus norvegicus similar to RIKEN cDNA A430005L14 (RGD1304567), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]"			MGC105699	MGC105699
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62659305-S	ILMN_61006	LOC498228	XM_573448.1	XM_573448.1		498228	62659305	XM_573448.1	LOC498228	XP_573448.1	ILMN_1353003	1580180	S	3337	GTGTGTGGAGCATCTGCTACGTGCCCTACATGGGAACTGCCTTCCAAATG				13q13	"PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp761N1114 (LOC498228), mRNA."
Transcription factor -> Transcription cofactor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription	Rattus norvegicus	RefSeq	GI_34858188-S	ILMN_52520	RGD1563451_PREDICTED	XM_227350.3	XM_227350.3		310595	109465168	XM_227350.3	RGD1563451_predicted	XP_227350.3	ILMN_1360141	130300	S	474	GCCTGGACATAACATGACACCTACAAACAAGGATCCAAGGCAGGAGTTGG	2	-	187034301-187034350	2q34	"PREDICTED: Rattus norvegicus similar to TDPOZ2 (predicted) (RGD1563451_predicted), mRNA."
Transcription factor -> Zinc finger transcription factor -> Other zinc finger transcription factor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_62662833-S	ILMN_275112	ASH2L_PREDICTED	XM_001062523.1	XM_001062523.1		290829	109504281	XM_001062523.1	Ash2l_predicted	XP_001062523.1	ILMN_1361125	50142	S	2068	CTCTGAGTGCCGTAAATCAGCCGCCGACTCTGAAGAGCCCATAAGCTCCA				16q12.4	"PREDICTED: Rattus norvegicus ash2 (absent, small, or homeotic)-like (Drosophila) (predicted) (Ash2l_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62654574-S	ILMN_67310	ANKRD50_PREDICTED	XM_215553.4	XM_215553.4		294988	109464781	XM_215553.4	Ankrd50_predicted	XP_215553.4	ILMN_1368928	6350520	S	4418	GTGCCTACCCAGTAAGGCTGCCATTCTCAGCATAACCCCCATGCTGAAGC	2	-	125377457-125377506	2q25	"PREDICTED: Rattus norvegicus ankyrin repeat domain 50 (predicted) (Ankrd50_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62643366-S	ILMN_67310	ANKRD50_PREDICTED	XM_215553.4	XM_215553.4		294988	109464781	XM_215553.4	Ankrd50_predicted	XP_215553.4	ILMN_1350817	1660692	S	4022	AGCCACAGTTTCTCATCCACCAGCAGGGCGGCGAGCAGAAGAGGAGGAAT	2	-	125379432-125379481	2q25	"PREDICTED: Rattus norvegicus ankyrin repeat domain 50 (predicted) (Ankrd50_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47576060-S	ILMN_264909	OLR1421	NM_001000780.1	NM_001000780.1		405057	47576060	NM_001000780.1	Olr1421	NP_001000780.1	ILMN_1365176	1660242	S	785	ACTACATGCTACCTATCTCGTTCCACACCCCTGAGAAGAACATGGTGGTG	10	-	44309556-44309605	10q22	"Rattus norvegicus olfactory receptor 1421 (Olr1421), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1421	Olr1421
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47577306-S	ILMN_276682	OLR718	NM_001000361.1	NM_001000361.1		295910	47577306	NM_001000361.1	Olr718	NP_001000361.1	ILMN_1373068	2810603	S	432	TGCAACCTGGGTTGGAGGGTTTGCACACTCTGTGGCTCAAGTTCTCTTTG	3	-	74214806-74214855	3q24	"Rattus norvegicus olfactory receptor 718 (Olr718), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr718	Olr718
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62665018-S	ILMN_50223	LOC304657	XM_222462.2	XM_222462.2		304657	62665018	XM_222462.2	LOC304657	XP_222462.2	ILMN_1350421	3450601	S	135	AAGGCTGCAAGGAGAATCTTCCAGGAGAAAATCCCCGCCGTTTCGTTGTC				6q16	"PREDICTED: Rattus norvegicus similar to M2 ribonucleotide reductase (LOC304657), mRNA."
		Rattus norvegicus	RefSeq	GI_11559995-S	ILMN_279985	CXCL5	XM_001068757.1	XM_001068757.1		60665	109499548	XM_001068757.1	Cxcl5	XP_001068757.1	ILMN_1369980	1050600	S	188	TGATCGCTAATTTGGAGGTGATCCCTGCAGGTCCACATTGCCCCAAGGTG	14	-	18825905-18825954	14p22	"PREDICTED: Rattus norvegicus chemokine (C-X-C motif) ligand 5 (Cxcl5), mRNA."
Transferase -> Acyltransferase;Transferase -> Other transferase	Protein metabolism and modification -> Protein modification	Rattus norvegicus	RefSeq	GI_42476286-S	ILMN_284521	TGM2	NM_019386.2	NM_019386.2		56083	42476286	NM_019386.2	Tgm2	NP_062259.2	ILMN_1362327	770408	S	3242	TCAAGCTGGAAGGCTGCAGTGTGGAGGGGTTTCTAGGGGGTGAGGTCAGA	3	-	148833083-148833132	3q42	"Rattus norvegicus transglutaminase 2, C polypeptide (Tgm2), mRNA."	"A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]"	"The reorganization or renovation of existing blood vessels [goid 1974] [evidence IMP]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IDA]; The formation of a covalent cross-link between or within protein chains [goid 18149] [evidence IEA]; The formation of an isopeptide cross-link between peptidyl-lysine and peptidyl-glutamine to produce N6-(L-isoglutamyl)-L-lysine [goid 18153] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of cell adhesion [goid 45785] [evidence ISS]; Any process that activates or increases the rate or extent of smooth muscle cell proliferation [goid 48661] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of the inflammatory response [goid 50729] [evidence IMP]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]; The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence IDA]; Any process that increases the concentration of calcium ions in the cytosol during the process of G-protein signaling coupled to IP3 second messenger [goid 51482] [evidence IMP]"	"Catalysis of the reaction: protein glutamine + alkylamine = protein N5-alkylglutamine + NH3. This reaction is the formation of the N6-(L-isoglutamyl)-L-lysine isopeptide, resulting in cross-linking polypeptide chains; the gamma-carboxamide groups of peptidyl-glutamine residues act as acyl donors, and the 6-amino-groups of peptidyl-lysine residues act as acceptors, to give intra- and intermolecular N6-(5-glutamyl)lysine cross-links [goid 3810] [evidence IDA]; Catalysis of the reaction: protein glutamine + alkylamine = protein N5-alkylglutamine + NH3. This reaction is the formation of the N6-(L-isoglutamyl)-L-lysine isopeptide, resulting in cross-linking polypeptide chains; the gamma-carboxamide groups of peptidyl-glutamine residues act as acyl donors, and the 6-amino-groups of peptidyl-lysine residues act as acceptors, to give intra- and intermolecular N6-(5-glutamyl)lysine cross-links [goid 3810] [evidence IEA]; Catalysis of the reaction: protein glutamine + alkylamine = protein N5-alkylglutamine + NH3. This reaction is the formation of the N6-(L-isoglutamyl)-L-lysine isopeptide, resulting in cross-linking polypeptide chains; the gamma-carboxamide groups of peptidyl-glutamine residues act as acyl donors, and the 6-amino-groups of peptidyl-lysine residues act as acceptors, to give intra- and intermolecular N6-(5-glutamyl)lysine cross-links [goid 3810] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IDA]; Interacting selectively with any enzyme [goid 19899] [evidence IC ]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IPI]"	TgaseII	TgaseII
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62651751-S	ILMN_267846	MUM1_PREDICTED	XM_001076641.1	XM_001076641.1		362838	109481581	XM_001076641.1	Mum1_predicted	XP_001076641.1	ILMN_1352857	6760253	S	2480	GCAGTGTGGCTGGCATGTACGCTTAGGTCTTGTGTTGCTTGGTGTGTCAG				7q11	"PREDICTED: Rattus norvegicus melanoma associated antigen (mutated) 1 (predicted) (Mum1_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62650647-S	ILMN_70119	LOC500647	XM_576024.1	XM_576024.1		500647	62650647	XM_576024.1	LOC500647	XP_576024.1	ILMN_1368136	4760242	S	176	CCGAGGAAGAGCGGGAGAAAGGGTAAGTATGGCACAGTCACAAGGCTGGG					"PREDICTED: Rattus norvegicus similar to inner mitochondrial membrane peptidase 2 (LOC500647), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62639713-S	ILMN_274221	RGD1559447_PREDICTED	XM_001079083.1	XM_001079083.1		499149	109461907	XM_001079083.1	RGD1559447_predicted	XP_001079083.1	ILMN_1369888	610451	S	366	GCTGGCTGGACTCTTACATGCAGAAGCTGTTGCTACTGGACGCGCCCTGA				1q22	"PREDICTED: Rattus norvegicus similar to tuberoinfundibular 39 residue protein precursor (predicted) (RGD1559447_predicted), mRNA."
Transcription factor -> Zinc finger transcription factor -> KRAB box transcription factor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Cell proliferation and differentiation	Rattus norvegicus	RefSeq	GI_62639120-S	ILMN_61677	LOC365214	XM_574381.1	XM_574381.1		365214	62639120	XM_574381.1	LOC365214	XP_574381.1	ILMN_1350875	4280609	S	1689	CTTGCACAGCAGATAACCGGGATGCGGTTCTGCGAAGCCAGTGCCAAGGA				1q21	"PREDICTED: Rattus norvegicus similar to zinc finger protein ZFP235 (LOC365214), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62662944-S	ILMN_293526	LOC290876	NM_001037182.1	NM_001037182.1		290876	81295332	NM_001037182.1	LOC290876	NP_001032259.1	ILMN_1364687	3170707	S	929	GAACCAACTCTACAGGACCAACAGGCACTCCCGCTTCCTGGCTATCACAG	16	+	80842077-80842126	16q12.5	"Rattus norvegicus similar to RIKEN cDNA 1700029H14 (LOC290876), mRNA."				MGC116066	MGC116066
Cell adhesion molecule -> Cadherin	Signal transduction -> Cell communication -> Cell adhesion-mediated signaling;Cell adhesion;Developmental processes -> Ectoderm development -> Neurogenesis	Rattus norvegicus	RefSeq	GI_62339297-S	ILMN_276093	PCDHB11_PREDICTED	XM_001055576.1	XM_001055576.1		291648	109506479	XM_001055576.1	Pcdhb11_predicted	XP_001055576.1	ILMN_1360912	2650408	S	2028	GCATGACCCCATTCACGGGGATGAAGAGGTGCTCACGCTGTACCTAGTCA	18	+	30232847-30232896	18p11	"PREDICTED: Rattus norvegicus protocadherin beta 11 (predicted) (Pcdhb11_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576602-S	ILMN_265981	OLR862	NM_001001071.1	NM_001001071.1		405961	47576602	NM_001001071.1	Olr862	NP_001001071.1	ILMN_1355684	6200358	S	885	CAAGGACATCAAAAGGGCATTTCTCAAGGTGATGGGACATGTTAAGGTGG	5	-	139263828-139263877	5q36	"Rattus norvegicus olfactory receptor 862 (Olr862), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr862	Olr862
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47577486-S	ILMN_284589	OLR481	NM_001000684.1	NM_001000684.1		404889	47577486	NM_001000684.1	Olr481	NP_001000684.1	ILMN_1374880	5390446	S	508	GACTCCAACCTAGTGAACCAGTTCTTCTGTGAAGACATTCCTCTTATGGC	3	-	69338306-69338355	3q24	"Rattus norvegicus olfactory receptor 481 (Olr481), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr481	Olr481
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62718245-S	ILMN_276112	LOC689541	XM_001071141.1	XM_001071141.1		689541	109513352	XM_001071141.1	LOC689541	XP_001071141.1	ILMN_1365579	7040520	S	658	AGAAGAAGTTGGTCCCACGGAAGCAGGGGAGCAAGGAGGGACATCTTGAT	Un|NW_047878.1	+	3345965-3346014		"PREDICTED: Rattus norvegicus similar to spermatogenesis associated glutamate (E)-rich protein 4d (LOC689541), mRNA."
Nucleic acid binding;Transferase -> Methyltransferase	Nucleoside, nucleotide and nucleic acid metabolism -> rRNA metabolism	Rattus norvegicus	RefSeq	GI_62658739	ILMN_267736	NSUN5_PREDICTED	XM_001071177.1	XM_001071177.1		288595	109497089	XM_001071177.1	Nsun5_predicted	XP_001071177.1	ILMN_1650363	3120341	S	1163	ACGTTCAGGCTGGCTCCTGTCTTACCCACATGGCCTCACCGAGGTCTGAG				12q12	"PREDICTED: Rattus norvegicus NOL1/NOP2/Sun domain family, member 5 (predicted) (Nsun5_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62663540-S	ILMN_61016	LOC502121	XM_577569.1	XM_577569.1		502121	62663540	XM_577569.1	LOC502121	XP_577569.1	ILMN_1360512	1580097	S	1144	AGGCTCCTGTGGCTGCTGATGGGCCAGTGCATTCTGCCAGTAACAATCCG					"PREDICTED: Rattus norvegicus similar to CDK5 regulatory subunit associated protein 1 (LOC502121), mRNA."
Receptor -> G-protein coupled receptor	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62666754	ILMN_274192	GPR143_PREDICTED	XM_001064908.1	XM_001064908.1		302619	109511683	XM_001064908.1	Gpr143_predicted	XP_001064908.1	ILMN_1651192	1980113	S	1105	AAACCCCAGGAAGGTGGTGTGTGTTGGGGGGCACACTTCTGATGAGGTGC				Xq21	"PREDICTED: Rattus norvegicus G protein-coupled receptor 143 (predicted) (Gpr143_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47576790-S	ILMN_280269	OLR189	NM_001000184.1	NM_001000184.1		293333	47576790	NM_001000184.1	Olr189	NP_001000184.1	ILMN_1361094	730136	S	431	CTATTCTGGGTGTACTCATCATAGTCAGAACTTTGGTATTTGTGACTCCG	1	+	162843466-162843515	1q33	"Rattus norvegicus olfactory receptor 189 (Olr189), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr1-162938513-162939454_ORF; Olr189	ratchr1-162938513-162939454_ORF; Olr189
Transferase -> Acetyltransferase	Cell cycle -> Mitosis -> Chromosome segregation	Rattus norvegicus	RefSeq	GI_62664031-S	ILMN_288992	LOC680014	XM_001055446.1	XM_001055446.1		680014	109506280	XM_001055446.1	LOC680014	XP_001055446.1	ILMN_1361261	2630390	S	4123	GCTTATGTTTGTGACACTGATGGTGGCAGGGGAAGCTCTCTGATGTGGAG	18	-	1935660-1935709	18p13	"PREDICTED: Rattus norvegicus similar to N-acetyltransferase ESCO1 (Establishment of cohesion 1 homolog 1) (ECO1 homolog 1) (LOC680014), mRNA."
Molecular function unclassified	Oncogenesis -> Tumor suppressor	Rattus norvegicus	RefSeq	GI_56090326-S	ILMN_299764	CYB561D2	NM_001007753.1	NM_001007753.1		363137	56090326	NM_001007753.1	Cyb561d2	NP_001007754.1	ILMN_1373531	5670070	S	1247	AGCTGACTGGGTTGGGGGACATTTCAGGTACTAGGGCACTCAGGGGTAGA	8	-	112787209-112787258	8q32	"Rattus norvegicus cytochrome b-561 domain containing 2 (Cyb561d2), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient [goid 22900] [evidence IEA]"	Interacting selectively with iron (Fe) ions [goid 5506] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC95239	MGC95239
		Rattus norvegicus	RefSeq	GI_62718788-S	ILMN_62490	LOC501476	XM_576884.1	XM_576884.1		501476	62718788	XM_576884.1	LOC501476	XP_576884.1	ILMN_1372223	5910605	S	1146	CCTGGGCCTCTGGGGTCATACCAGGTTTTACAACACTCAGTGTGTGGACC					"PREDICTED: Rattus norvegicus hypothetical gene supported by BC082068 (LOC501476), mRNA."
Signaling molecule -> Peptide hormone	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Developmental processes -> Mesoderm development;Cell proliferation and differentiation	Rattus norvegicus	RefSeq	GI_24308511-S	ILMN_280184	PRL7B1	NM_153738.1	NM_153738.1		266804	24308511	NM_153738.1	Prl7b1	NP_714960.1	ILMN_1369152	6770551	S	444	GCCCTCTATATCACATGGAGACAGAACTCAAGAGTATGACAGGAGCCCCC	17	+	43790551-43790600	17p11	"Rattus norvegicus prolactin family 7, subfamily b, member 1 (Prl7b1), mRNA."	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		"The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects [goid 5179] [evidence IEA]"	Prlpn	Prlpn
Nucleic acid binding -> Ribonucleoprotein	Nucleoside, nucleotide and nucleic acid metabolism -> rRNA metabolism	Rattus norvegicus	RefSeq	GI_13242280-S	ILMN_273898	BXDC5	XM_001077236.1	XM_001077236.1		499725	109467668	XM_001077236.1	Bxdc5	XP_001077236.1	ILMN_1349497	1400369	S	1767	GTGGGCTCACACAGGCAACAAACAACTCTAGTGGCGTCAGCAGTTAGTGC				2q44	"PREDICTED: Rattus norvegicus brix domain containing 5, transcript variant 2 (Bxdc5), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]"	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence IEA]	Interacting selectively with ribosomal RNA [goid 19843] [evidence IEA]
Nucleic acid binding -> Ribonucleoprotein	Nucleoside, nucleotide and nucleic acid metabolism -> rRNA metabolism	Rattus norvegicus	RefSeq	GI_62644540-S	ILMN_273898	BXDC5	XM_001077236.1	XM_001077236.1		499725	109467668	XM_001077236.1	Bxdc5	XP_001077236.1	ILMN_1357860	6550427	S	904	CACACGGCTAGGTCACTCTATCGGACGTATGTTTGCTTCTCTCTTTCCTC				2q44	"PREDICTED: Rattus norvegicus brix domain containing 5, transcript variant 2 (Bxdc5), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]"	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules [goid 6364] [evidence IEA]	Interacting selectively with ribosomal RNA [goid 19843] [evidence IEA]
Receptor -> Other receptor	Intracellular protein traffic -> Peroxisome transport;Transport	Rattus norvegicus	RefSeq	GI_62655884-S	ILMN_262694	WDR24	XM_001063483.1	XM_001063483.1		360497	109487916	XM_001063483.1	Wdr24	XP_001063483.1	ILMN_1374432	2680039	S	2647	CCGTGAGCTGCCTCAACCAAGCCTCCACCACCCTGCATGTCAACTGTAGT	10	+	15093775-15093824	10q12	"PREDICTED: Rattus norvegicus WD repeat domain 24 (Wdr24), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62638218-S	ILMN_269988	RGD1564259_PREDICTED	XM_001069589.1	XM_001069589.1		292477	109460443	XM_001069589.1	RGD1564259_predicted	XP_001069589.1	ILMN_1365287	2360504	S	3302	GCAGTGAAGTTGGAGGCGGAGAAGAAGACCGCAGCCTCTGACCCACAGAA				1p13	"PREDICTED: Rattus norvegicus similar to OTTHUMP00000040155 (predicted) (RGD1564259_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62665728-S	ILMN_283200	RGD1306008_PREDICTED	XM_001068640.1	XM_001068640.1		294301	109509759	XM_001068640.1	RGD1306008_predicted	XP_001068640.1	ILMN_1370514	5910138	S	983	GACCTGGGATGCCGACCCTCTGTCTGCCGACCCAGCCATTCCTACTTTAA				20p12	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930511I11 (predicted) (RGD1306008_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62666080-S	ILMN_57342	LOC502424	XM_577906.1	XM_577906.1		502424	62666080	XM_577906.1	LOC502424	XP_577906.1	ILMN_1371858	110102	S	719	CGACCAGCCCCACTTCCACAAAAAGCAGGAACTGGCCAGGCAAATACAGC					"PREDICTED: Rattus norvegicus similar to double homeobox, 4 (LOC502424), mRNA."
Transcription factor -> Zinc finger transcription factor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Developmental processes	Rattus norvegicus	RefSeq	GI_27706429-S	ILMN_282088	RGD1562871_PREDICTED	XM_001060163.1	XM_001060163.1		302366	109512210	XM_001060163.1	RGD1562871_predicted	XP_001060163.1	ILMN_1374778	1580519	S	285	GAAGGCAGAAGAAAAGGCTGCAGTCGAGTCTGACCAGGAAGAGCGCCTCC				Xq31	"PREDICTED: Rattus norvegicus similar to BMI1-like protein (predicted) (RGD1562871_predicted), mRNA."
Transferase -> Acetyltransferase	Protein metabolism and modification -> Protein modification -> Protein acetylation	Rattus norvegicus	RefSeq	GI_19424337-S	ILMN_290296	HADHB	NM_133618.1	NM_133618.1		171155	19424337	NM_133618.1	Hadhb	NP_598302.1	ILMN_1351996	610110	S	1587	GCGGTCAAGCCTTGCCAGTGTTCGAGCTTTCCGATAATCACAGCTTCTGC	6	-	26139680-26139729	6q14	"Rattus norvegicus hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit (Hadhb), nuclear gene encoding mitochondrial protein, mRNA."	"A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IDA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence IEA]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence ISS]; The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae [goid 5743] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence IEA]; The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation [goid 5759] [evidence ISS]; A complex that includes the long-chain 3-hydroxyacyl-CoA dehydrogenase and long-chain enoyl-CoA hydratase activities in two subunits (alpha and beta), catalyzing two steps of the fatty acid beta-oxidation cycle within the mitochondrial matrix [goid 16507] [evidence IDA]"	"The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis [goid 6631] [evidence IEA]; The metabolic oxidation of a long-chain fatty acid by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A [goid 6635] [evidence IDA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]"	"Interacting selectively with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group [goid 62] [evidence IDA]; Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH + H+ [goid 3857] [evidence IDA]; Catalysis of the reaction: acyl-CoA + acetyl-CoA = CoA + 3-oxoacyl-CoA [goid 3988] [evidence ISS]; Catalysis of the reaction: acyl-CoA + acetyl-CoA = CoA + 3-oxoacyl-CoA [goid 3988] [evidence IDA]; Catalysis of the reaction: acyl-CoA + acetyl-CoA = CoA + 3-oxoacyl-CoA [goid 3988] [evidence IEA]; Catalysis of the reaction: (3S)-3-hydroxyacyl-CoA = trans-2(or 3)-enoyl-CoA + H2O [goid 4300] [evidence IDA]; Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the reaction: (3S)-3-hydroxyacyl-CoA = trans-2-enoyl-CoA + H2O [goid 16508] [evidence IDA]; Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH + H+. Acts most rapidly on derivatives with chain length 8 or 10 [goid 16509] [evidence IDA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH [goid 51287] [evidence IDA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62663624-S	ILMN_286729	RGD1560514_PREDICTED	XM_001059259.1	XM_001059259.1		498757	109505933	XM_001059259.1	RGD1560514_predicted	XP_001059259.1	ILMN_1362135	6840170	S	1721	TCGTGTCTGGAAGAAGATACAGCTCCAATGGCCTCATGTCCTGGGGAAGG				17q11	"PREDICTED: Rattus norvegicus similar to acyloxyacyl hydrolase (predicted) (RGD1560514_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62638989-S	ILMN_54162	LOC292543	XM_218182.3	XM_218182.3		292543	62638989	XM_218182.3	LOC292543	XP_218182.3	ILMN_1352856	4760017	S	1690	AGGAACTGACTGCAGAGCCCAGGGAGGGGGGTGTGTCTTTCACTCATGGA				1q12	"PREDICTED: Rattus norvegicus similar to solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 (LOC292543), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]; The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells [goid 6865] [evidence IEA]"	Catalysis of the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group [goid 15171] [evidence IEA]
Select regulatory molecule -> G-protein -> Small GTPase	Signal transduction -> Intracellular signaling cascade;Intracellular protein traffic -> Endocytosis -> Receptor mediated endocytosis;Intracellular protein traffic -> General vesicle transport	Rattus norvegicus	RefSeq	GI_62653963-S	ILMN_56311	RAB39_PREDICTED	XM_236242.4	XM_236242.4		315668	109483444	XM_236242.4	Rab39_predicted	XP_236242.4	ILMN_1361756	6660292	S	531	CAACGTCAGGTTTCAAGGGAGGAAGCTGAGAAACTGTCAAAGGACTGTGG	8	-	57156221-57156270	8q24	"PREDICTED: Rattus norvegicus RAB39, member RAS oncogene family (predicted) (Rab39_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62658871-S	ILMN_52646	LOC498182	XM_573397.1	XM_573397.1		498182	62658871	XM_573397.1	LOC498182	XP_573397.1	ILMN_1357744	4610671	S	2136	ATCAGCCCTACACCACTGCCTGATTCCGACGAGGATGATGACCTGGGCCT					"PREDICTED: Rattus norvegicus similar to MGC81602 protein (LOC498182), mRNA."
Lyase -> Dehydratase;Isomerase -> Epimerase/racemase	Carbohydrate metabolism -> Glycogen metabolism	Rattus norvegicus	RefSeq	GI_62662027-S	ILMN_55400	TGDS_PREDICTED	XM_224518.3	XM_224518.3		306164	62662027	XM_224518.3	Tgds_predicted	XP_224518.3	ILMN_1360271	4050044	S	1741	CTGCAGGATTCGGGATAGCAGGACCCAGTGTTTGTGAGGTGACTTGTCAG				15q24	"PREDICTED: Rattus norvegicus TDP-glucose 4,6-dehydratase (predicted) (Tgds_predicted), mRNA."
Transcription factor -> Zinc finger transcription factor;Nucleic acid binding -> Other DNA-binding protein	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_62643791	ILMN_65140	ZBTB7B_PREDICTED	XM_215633.4	XM_215633.4		295248	109465065	XM_215633.4	Zbtb7b_predicted	XP_215633.2	ILMN_1650833	6550707	S	2124	GGCCCTTCCCCCAGAGCTTTCATTCCAGTTCCAAGCTGAGGTTTTTGGGG	2	-	181576232-181576281	2q34	"PREDICTED: Rattus norvegicus zinc finger and BTB domain containing 7B (predicted) (Zbtb7b_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_34875639-S	ILMN_161847	LOC363221	XM_343560.1	XM_343560.1			34875639	XM_343560.1	LOC363221		ILMN_2039766	7560142	S	513	GCTGCCAACCCAGAGCAAAGCTAGCTTCCCAAGCATCCTCAATATGGACA					"Rattus norvegicus similar to DNA segment, Chr 1, Brigham & Womens Genetics 0212 expressed (LOC363221), mRNA."
Transcription factor -> Zinc finger transcription factor -> KRAB box transcription factor	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62641252-S	ILMN_273415	LOC368120	XM_001079648.1	XM_001079648.1		368120	109462834	XM_001079648.1	LOC368120	XP_001079648.1	ILMN_1360840	360603	S	3687	CACCTCATAGTCTAACATGCTCAAGCTGCCTCTCTCCAATGAGTCTTGGC				1q36	"PREDICTED: Rattus norvegicus similar to KOX31-like zinc finger protein (LOC368120), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62667601-S	ILMN_272760	RGD1559982_PREDICTED	XM_001058237.1	XM_001058237.1		293850	109462358	XM_001058237.1	RGD1559982_predicted	XP_001058237.1	ILMN_1362643	3440286	S	1306	GCAGCTCTGGCTGAAAATGCAGAAGCCCAGGAGGGGGAAGGAGTGGAAGT				Xq37	"PREDICTED: Rattus norvegicus similar to paraneoplastic antigen like 6A (predicted) (RGD1559982_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62655757-S	ILMN_287659	RGD1307032_PREDICTED	XR_007456.1	XR_007456.1		360486	109490265	XR_007456.1	RGD1307032_predicted		ILMN_1371538	4480022	S	1371	AAGCGACAGTTCCAACCCTTGAGAGACATGGTCAGGCTGGGGCCTTCCAG				10q12	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1520401A03 gene (predicted) (RGD1307032_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576878-S	ILMN_272658	OLR221	NM_001000200.1	NM_001000200.1		293367	47576878	NM_001000200.1	Olr221	NP_001000200.1	ILMN_1372509	2970014	S	688	GCTGGAGAAGGGAGACTCAAGGTCTTCTCCACCTGTGGCTCCCACCTCAT	1	-	164180147-164180196	1q33	"Rattus norvegicus olfactory receptor 221 (Olr221), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr221	Olr221
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_62640734-S	ILMN_51797	RGD1559901_PREDICTED	XM_574478.2	XM_574478.2		499185	109458935	XM_574478.2	RGD1559901_predicted	XP_574478.2	ILMN_1360066	5700504	S	690	CGAGCCTTCCTTGGGAGAACATTCCTCTCCTTGCACAGAAGCTGGAGGTG	1	+	134517076-134517125	1q31	"PREDICTED: Rattus norvegicus similar to mitochondrial ribosomal protein S11 (predicted) (RGD1559901_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62647205-S	ILMN_278786	RGD1561800_PREDICTED	XM_001054222.1	XM_001054222.1		500111	109473453	XM_001054222.1	RGD1561800_predicted	XP_001054222.1	ILMN_1362994	4280025	S	449	TCCGAGAGCTGCTGCCTGGCCTCAAAGTCATAGACGGGGAACGTGTGAGT				4q24	"PREDICTED: Rattus norvegicus similar to CDNA sequence BC027309 (predicted) (RGD1561800_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62660652-S	ILMN_274001	SH3BP2	XM_001059805.1	XM_001059805.1		305450	109500763	XM_001059805.1	Sh3bp2	XP_001059805.1	ILMN_1369384	1430523	S	1525	CCACAGAGTCCTGCGAGGTGGAAAGGTTGTTCAAAGCCACAAACCCTCTC				14q21	"PREDICTED: Rattus norvegicus SH3-domain binding protein 2 (Sh3bp2), mRNA."	"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together [goid 5575] [evidence ND ]"	"Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ]"	"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins [goid 17124] [evidence ISS]"
Select regulatory molecule -> Kinase modulator -> Kinase activator	Cell cycle -> Mitosis -> Cytokinesis	Rattus norvegicus	RefSeq	GI_62649449-S	ILMN_52289	MOBKL2C_PREDICTED	XM_233403.3	XM_233403.3		313511	62649449	XM_233403.3	Mobkl2c_predicted	XP_233403.3	ILMN_1367904	1690735	S	648	TGGGAGAGGGGACCCTTAGGAGCCTGCTGGCAGAGAAATGTGAAGGCCTA				5q36	"PREDICTED: Rattus norvegicus MOB1, Mps One Binder kinase activator-like 2C (yeast) (predicted) (Mobkl2c_predicted), mRNA."
Cytoskeletal protein -> Actin family cytoskeletal protein -> Non-motor actin binding protein	Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_19173799-S	ILMN_298267	ACTN3	NM_133424.1	NM_133424.1		171009	19173799	NM_133424.1	Actn3	NP_596915.1	ILMN_1362652	2480097	S	2782	GGATTCCACTGTCCCTCAGAGCAAGGGCTTCAAATCATCCAGCACCAACC	1	-	207475605-207475654	1q43	"Rattus norvegicus actinin alpha 3 (Actn3), mRNA."	Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments [goid 5925] [evidence ISS]	"The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents [goid 6520] [evidence IEA]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence IEA]; A process whereby force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis [goid 6936] [evidence ISS]; Establishment and maturation of focal adhesions, complexes of intracellular signaling and structural proteins which provide a structural link between the internal actin cytoskeleton and the ECM, and also function as a locus of signal transduction activity [goid 48041] [evidence ISS]"	"Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6 [goid 30170] [evidence IEA]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence IEA]; Interacting selectively with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits [goid 51015] [evidence ISS]"
Cytoskeletal protein -> Actin family cytoskeletal protein -> Actin binding motor protein	Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_62657357-S	ILMN_274312	LOC688266	XM_001081700.1	XM_001081700.1		688266	109492249	XM_001081700.1	LOC688266	XP_001081700.1	ILMN_1364356	4810411	S	1707	CCTGGGGGAGTAAGCAGACACTTTCCCTGAGGTGGGCTGAAGAACTGGGT					"PREDICTED: Rattus norvegicus similar to Myosin-15 (Myosin XV) (Unconventional myosin-15) (LOC688266), mRNA."
		Rattus norvegicus	RefSeq	GI_62651855-S	ILMN_63039	LOC500812	XM_576199.1	XM_576199.1		500812	62651855	XM_576199.1	LOC500812	XP_576199.1	ILMN_1366149	5360204	S	2361	GAGACACTACAAGGGGATGCCTTTATACAAAGCTCCTGGGCCCCCCTGAG					"PREDICTED: Rattus norvegicus similar to envelope (LOC500812), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576792-S	ILMN_297195	OLR829	NM_001000901.1	NM_001000901.1		405211	47576792	NM_001000901.1	Olr829	NP_001000901.1	ILMN_1368815	4150136	S	924	TGATGCTCTGTCCAGGGTTCAATTGCACAGATATCAGAGGAGCAACGCAC	4	+	152864564-152864613	4q42	"Rattus norvegicus olfactory receptor 829 (Olr829), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr829	Olr829
Ion channel	Transport -> Ion transport -> Cation transport	Rattus norvegicus	RefSeq	GI_11177891-S	ILMN_295500	KCNT1	NM_021853.1	NM_021853.1		60444	11177891	NM_021853.1	Kcnt1	NP_068625.1	ILMN_1362650	4120601	S	3533	CCCTTTCCTATGTACTCATCAACCCCCCGCCAGACACAAGACTGGAGCCC	3	+	4087754-4087803	3p13	"Rattus norvegicus potassium channel, subfamily T, member 1 (Kcnt1), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IDA]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of potassium ions (K+) into, out of, within or between cells [goid 6813] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]"	"Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5267] [evidence IDA]; Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic [goid 3824] [evidence IEA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient [goid 15269] [evidence IEA]; Interacting selectively with potassium (K+) ions [goid 30955] [evidence IEA]"	Slack; rSlo2	Slack; rSlo2
Nucleic acid binding -> Translation factor -> Translation initiation factor;Hydrolase	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_51948479-S	ILMN_263801	MTIF2	NM_001004254.1	NM_001004254.1		305606	51948479	NM_001004254.1	Mtif2	NP_001004254.1	ILMN_1354123	1400300	S	1853	GCAACAGATTGCCCTACAAGGTGGAGGAGTACCCAATAGGTGAGGCTTCT	14	+	110557949-110557987:110558369-110558379	14q22	"Rattus norvegicus mitochondrial translational initiation factor 2 (Mtif2), nuclear gene encoding mitochondrial protein, mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence TAS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]; A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration [goid 5739] [evidence ISS]"	"The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence TAS]; The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA [goid 6413] [evidence TAS]; Any process that modulates the frequency, rate or extent of translational initiation [goid 6446] [evidence ISS]"	"Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence TAS]; Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide [goid 3743] [evidence IEA]; Catalysis of the reaction: GTP + H2O = GDP + phosphate [goid 3924] [evidence IEA]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence TAS]; Interacting selectively with GTP, guanosine triphosphate [goid 5525] [evidence IEA]; Interacting selectively with any part of the small ribosomal subunit [goid 43024] [evidence ISS]"	MGC94962	MGC94962
Transferase -> Glycosyltransferase	Carbohydrate metabolism -> Other polysaccharide metabolism;Lipid, fatty acid and steroid metabolism -> Lipid metabolism;Protein metabolism and modification -> Protein modification -> Protein glycosylation	Rattus norvegicus	RefSeq	GI_9507098-S	ILMN_267423	ST6GALNAC3	NM_019123.1	NM_019123.1		29758	9507098	NM_019123.1	St6galnac3	NP_061996.1	ILMN_1357862	5130341	S	2821	CTGTGCCACCTCGACAGGGCTTTCCTACGATTAAGGGCTATGCTAACTCA				2q45	"Rattus norvegicus ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 (St6galnac3), mRNA."	"The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [evidence IEA]"	"The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IDA]; The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins [goid 6486] [evidence IEA]"	Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IDA]; Catalysis of the formation of sialylglycoconjugates via transfer of the sialic acid group from CMP to one of several glycoconjugate acceptors [goid 8373] [evidence IEA]	Siat7c	Siat7c
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47578002-S	ILMN_282671	OLR1077	NM_001000941.1	NM_001000941.1		405280	47578002	NM_001000941.1	Olr1077	NP_001000941.1	ILMN_1368189	6350059	S	478	AGCATGATGGTGCTGCGGCTGGCCTTCTGTACAGACTTGGAAATCCCGCA	7	-	12100419-12100468	7q11	"Rattus norvegicus olfactory receptor 1077 (Olr1077), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]
Transcription factor -> Zinc finger transcription factor -> Other zinc finger transcription factor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Developmental processes -> Other developmental process	Rattus norvegicus	RefSeq	GI_62639454-S	ILMN_292920	LOC365226	XM_001078974.1	XM_001078974.1		365226	109461637	XM_001078974.1	LOC365226	XP_001078974.1	ILMN_1357617	5900551	S	255	TCGGCACCTCAAATGCCACAGCCCAGCAAGGCGCCACGTGTGCCACTATT				1q21	"PREDICTED: Rattus norvegicus similar to ovo-like 2 isoform A (LOC365226), mRNA."
Transporter -> Other transporter	Intracellular protein traffic -> Nuclear transport	Rattus norvegicus	RefSeq	GI_62645371-S	ILMN_266432	NUP160_PREDICTED	XM_001077803.1	XM_001077803.1		311182	109470294	XM_001077803.1	Nup160_predicted	XP_001077803.1	ILMN_1356626	5900131	S	4305	CCCTGTCCTCAGGGCCAATTTTGATGACTGTAAATGATGTGTACGGCGCC				3q24	"PREDICTED: Rattus norvegicus nucleoporin 160 (predicted) (Nup160_predicted), mRNA."
	Oncogenesis -> Tumor suppressor;Cell structure and motility -> Cell structure;Cell structure and motility -> Cell motility	Rattus norvegicus	RefSeq	GI_62661019-S	ILMN_266212	RGD1565434_PREDICTED	XM_001064648.1	XM_001064648.1		305675	109502129	XM_001064648.1	RGD1565434_predicted	XP_001064648.1	ILMN_1368310	3780132	S	2922	CAGAGCGGCTACCACCTTGGACGAGCCCATTTGGAGGGCAGAGTTGGCCT				15p16	"PREDICTED: Rattus norvegicus similar to synaptopodin 2-like (predicted) (RGD1565434_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576082-S	ILMN_265362	OLR1410	NM_001000784.1	NM_001000784.1		405062	47576082	NM_001000784.1	Olr1410	NP_001000784.1	ILMN_1355946	4120348	S	660	TGCTCGAATTGCTGTCGCAGTCTTTCAGATACCTTCTGCCAAGGGCAGGC	10	+	36621290-36621339	10q22	"Rattus norvegicus olfactory receptor 1410 (Olr1410), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1410	Olr1410
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_62663795-S	ILMN_271321	RGD1564088_PREDICTED	XM_001068761.1	XM_001068761.1		291290	109506126	XM_001068761.1	RGD1564088_predicted	XP_001068761.1	ILMN_1364321	4010068	S	106	CAGGCTATCAAGCCCAAGATGCCAAAGGGCCCCAGCTGTAAACTCAGCCA				17q12.3	"PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (predicted) (RGD1564088_predicted), mRNA."
Cell junction protein -> Tight junction	Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_62655755-A	ILMN_274570	CLDN9	NM_001011889.1	NM_001011889.1		287099	58865347	NM_001011889.1	Cldn9	NP_001011889.1	ILMN_1376745	3440494	S	1321	GTGGACTGTGACCTACTAGGGTTTCAGCTGGTCAAGTCTAGCCCAAGCAG	10	-	12947484-12947533	10q12	"Rattus norvegicus claudin 9 (Cldn9), mRNA."	"A belt-like region of very close contact between the plasma membranes of adjacent cells so that the intercellular space is completely occluded. They occur in epithelia and brain endothelia [goid 5923] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"		The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62667338-S	ILMN_278278	LOC678868	XM_001053582.1	XM_001053582.1		678868	109469959	XM_001053582.1	LOC678868	XP_001053582.1	ILMN_1372706	2470619	S	5088	CATTGAGACCTTTGTGCGGCTAGTGTTCATCGTGCGCTCTGAGGCCCAGC					"PREDICTED: Rattus norvegicus similar to PDZ domain containing 10 (LOC678868), mRNA."	"Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]"
		Rattus norvegicus	RefSeq	GI_62662126-S	ILMN_66257	LOC364370	XM_344393.2	XM_344393.2		364370	62662126	XM_344393.2	LOC364370	XP_344394.2	ILMN_1366590	4610181	S	361	AAGTGCGAATCTTCAGTGGAAACAGGGTGAGCAGCCAGCAGAAGGTGCAG					"PREDICTED: Rattus norvegicus similar to T cell receptor (LOC364370), mRNA."
Select regulatory molecule -> Phosphatase modulator -> Phosphatase inhibitor	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Protein targeting and localization -> Protein targeting;Muscle contraction	Rattus norvegicus	RefSeq	GI_18426819-S	ILMN_287717	PPP1R14A	NM_130403.1	NM_130403.1		114004	18426819	NM_130403.1	Ppp1r14a	NP_569087.1	ILMN_1374409	780167	S	221	GCAGGGAGGCAGACATGCCAGATGAGGTCAACATCGACGAGCTGCTGGAA	1	+	84423833-84423882	1q21	"Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 14A (Ppp1r14a), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule [goid 42325] [evidence IEA]"	"Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence TAS]; Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from proteins [goid 4864] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]"	Cpi17	Cpi17
		Rattus norvegicus	RefSeq	GI_62661962-S	ILMN_48403	LOC502014	XM_577442.1	XM_577442.1		502014	62661962	XM_577442.1	LOC502014	XP_577442.1	ILMN_1360206	1740154	S	923	CTTCGTCAGTCAGCTGAGCACCTTCGTCAGTCAGCTGAGCACCTTCGTCA					"PREDICTED: Rattus norvegicus LOC502014 (LOC502014), mRNA."
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis;Other metabolism	Rattus norvegicus	RefSeq	GI_62648168-S	ILMN_266596	MRPL51_PREDICTED	XM_001063524.1	XM_001063524.1		297601	109474233	XM_001063524.1	Mrpl51_predicted	XP_001063524.1	ILMN_1358065	5720435	S	556	CTGGAGAGACACATTTATCACCCCGAGAAGGGGAACAGGACTTAGCCCAG				4q42	"PREDICTED: Rattus norvegicus mitochondrial ribosomal protein L51 (predicted) (Mrpl51_predicted), mRNA."
Nucleic acid binding -> mRNA processing factor -> mRNA polyadenylation factor	Nucleoside, nucleotide and nucleic acid metabolism -> Pre-mRNA processing -> mRNA polyadenylation;Nucleoside, nucleotide and nucleic acid metabolism -> RNA localization;Developmental processes -> Embryogenesis	Rattus norvegicus	RefSeq	GI_62642296-S	ILMN_57742	LOC309510	XM_220043.3	XM_220043.3		309510	62642296	XM_220043.3	LOC309510	XP_220043.3	ILMN_1370806	2190647	S	3877	GGATAGCACCAGGACTGTTTCAAAAGCTTTGTCACCACCACGGATGCCGG				1q53	"PREDICTED: Rattus norvegicus similar to mKIAA0940 protein (LOC309510), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62654992-S	ILMN_67163	RGD1565095_PREDICTED	XM_578786.2	XM_578786.2		503252	109485956	XM_578786.2	RGD1565095_predicted	XP_578786.2	ILMN_1353292	6380563	S	181	CTGTGTGCTCCAGGAAGGAAAGTCCCCACGGCAGTGCTTGAAGGAAGGCA	9	-	36373733-36373770:36375328-36375339	9q21	"PREDICTED: Rattus norvegicus similar to hypothetical protein MGC52110 (predicted) (RGD1565095_predicted), mRNA."
Nucleic acid binding -> Helicase -> DNA helicase	Nucleoside, nucleotide and nucleic acid metabolism -> DNA metabolism -> DNA repair;Nucleoside, nucleotide and nucleic acid metabolism -> DNA metabolism -> DNA recombination;Immunity and defense	Rattus norvegicus	RefSeq	GI_41056214-S	ILMN_279984	XRCC5	NM_177419.1	NM_177419.1		363247	41056214	NM_177419.1	Xrcc5	NP_803154.1	ILMN_1361265	4670050	S	2317	GAATCCAGGAGTACCAGCTCCGTGTTGCTGAGAGCTCCGACACCATCCCT	9	+	71581738-71581787	9q33	"Rattus norvegicus X-ray repair complementing defective repair in Chinese hamster cells 5 (Xrcc5), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; A large protein complex which is involved in the repair of DNA double-strand breaks and V(D)J recombination events. In mammals, it consists of the DNA-dependent protein kinase catalytic subunit (DNA-PKcs), the DNA end-binding heterodimer, Ku, the nuclear phosphoprotein XRCC4 and DNA ligase IV [goid 5958] [evidence TAS]"	"The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence NAS]; The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix [goid 6302] [evidence ISS]; The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends [goid 6303] [evidence IEA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]; The molecular events that lead to the integration of a viral genome into the host genome [goid 19047] [evidence ISS]; The set of processes involved in the start of virus infection of cells [goid 19059] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of neurogenesis, the origin and formation of neurons [goid 50769] [evidence ISS]; The process whereby a relatively unspecialized cell acquires specialized features of a hemopoietic stem cell. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells [goid 60218] [evidence ISS]"	"Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Catalysis of the reaction: ATP + H2O = ADP + phosphate, driving the unwinding of the DNA helix [goid 4003] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue [goid 8022] [evidence ISS]"	Kup80; Ku80	Kup80; Ku80
Receptor -> Ligand-gated ion channel -> Acetylcholine receptor;Ion channel -> Ligand-gated ion channel -> Acetylcholine receptor	Signal transduction -> Cell communication;Transport -> Ion transport -> Cation transport;Neuronal activities -> Synaptic transmission -> Nerve-nerve synaptic transmission;Sensory perception	Rattus norvegicus	RefSeq	GI_19173791-S	ILMN_275694	CHRNA2	NM_133420.1	NM_133420.1		170945	19173791	NM_133420.1	Chrna2	NP_596911.1	ILMN_1356988	4730577	S	1595	CCTGAGACCAAGACTCCATCCCAGGCTAGCGAGATTCTGCTGTCACCTCA	15	+	45585610-45585659	15p12	"Rattus norvegicus cholinergic receptor, nicotinic, alpha 2 (neuronal) (Chrna2), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence IEA]; A protein complex that acts as an acetylcholine receptor, and forms a transmembrane channel through which ions may pass in response to ligand binding. The complex is a homo- or heteropentamer of subunits that are members of a neurotransmitter receptor superfamily [goid 5892] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]; The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane [goid 45202] [evidence IEA]; A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters across the synaptic cleft and transmit the signal to the postsynaptic membrane [goid 45211] [evidence IEA]"	"The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence ISS]"	 [goid 4889] [evidence IEA];  [goid 4889] [evidence ISS];  [goid 4889] [evidence IDA]; Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism [goid 5216] [evidence IEA]; Catalysis of the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts [goid 5230] [evidence IEA]; Combining with acetylcholine to initiate a change in cell activity [goid 15464] [evidence IEA]; Combining with acetylcholine to initiate a change in cell activity [goid 15464] [evidence ISS]	ACHR	ACHR
Nucleic acid binding -> Helicase -> RNA helicase	Nucleoside, nucleotide and nucleic acid metabolism -> Pre-mRNA processing -> mRNA splicing	Rattus norvegicus	RefSeq	GI_62650254-S	ILMN_264745	DHX57	XM_001062787.1	XM_001062787.1		366532	109478936	XM_001062787.1	Dhx57	XP_001062787.1	ILMN_1373580	5550204	S	4027	TGGCGGAGGCCAAGTGAGTGTGCAGCTTCAAAGAGGGGCATTCGTCGTCT				6q11	"PREDICTED: Rattus norvegicus DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 (Dhx57), mRNA."			Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA or RNA helix [goid 4386] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]
Hydrolase -> Glucosidase	Carbohydrate metabolism -> Other carbohydrate metabolism;Lipid, fatty acid and steroid metabolism -> Steroid metabolism -> Bile acid metabolism	Rattus norvegicus	RefSeq	GI_62648891-S	ILMN_276341	GBA2	XM_001069986.1	XM_001069986.1		298399	109476402	XM_001069986.1	Gba2	XP_001069986.1	ILMN_1354857	2120139	S	2678	CAGCAGTCACACAAGGCACAGCACCCAGCACAGCCTGAATGCGGACCAAA				5q22	"PREDICTED: Rattus norvegicus glucosidase beta 2 (Gba2), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence ISS]"	"The chemical reactions and pathways involving bile acids, any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 8206] [evidence IEA]; The chemical reactions and pathways involving bile acids, any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 8206] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of O-glycosides, any compound in which a glycosyl group has been substituted into a hydroxyl group [goid 16142] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of O-glycosides, any compound in which a glycosyl group has been substituted into a hydroxyl group [goid 16142] [evidence ISS]; The chemical reactions and pathways involving bile acids, any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 8206] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of O-glycosides, any compound in which a glycosyl group has been substituted into a hydroxyl group [goid 16142] [evidence IEA]; The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways involving sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid) [goid 6665] [evidence IEA]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]; The chemical reactions and pathways involving bile acids, any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine [goid 8206] [evidence ISS]; The chemical reactions and pathways resulting in the breakdown of O-glycosides, any compound in which a glycosyl group has been substituted into a hydroxyl group [goid 16142] [evidence ISS]"	"Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose [goid 8422] [evidence IEA]; Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose [goid 8422] [evidence ISS]; Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose [goid 8422] [evidence IEA]; Catalysis of the reaction: D-glucosyl-N-acylsphingosine + H2O = D-glucose + N-acylsphingosine [goid 4348] [evidence IEA]; Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose [goid 8422] [evidence ISS]; Catalysis of the hydrolysis of any glycosyl bond [goid 16798] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62665920-S	ILMN_276444	ZFP365	NM_001025145.1	NM_001025145.1		499425	68341936	NM_001025145.1	Zfp365	NP_001020316.1	ILMN_1364903	3710091	S	1241	CCATTTGAAGGGGAGAAGCTACCTGAAGAAAGCCAAGGATGAGCGAGCCG	20	+	21513394-21513443	20p11	"Rattus norvegicus zinc finger protein 365 (Zfp365), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"		Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]
Transferase -> Glycosyltransferase	Carbohydrate metabolism;Immunity and defense -> Other immune and defense	Rattus norvegicus	RefSeq	GI_62644790-S	ILMN_49106	ABO_PREDICTED	XM_215986.4	XM_215986.4		296504	109467933	XM_215986.4	Abo_predicted	XP_215986.3	ILMN_1374268	510039	S	1841	GACTCTGTTACATAGTTAACTGAGGGCTGGTGCATCCTCCCTCGGGCTTA	3	+	5596609-5596658	3p12	"PREDICTED: Rattus norvegicus ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) (predicted) (Abo_predicted), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]"	"The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA]"	"Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + glycoprotein-alpha-L-fucosyl-(1,2)-D-galactose = UDP + glycoprotein-N-acetyl-alpha-D-galactosaminyl-(1,3)-(alpha-L-fucosyl-(1,2))-D-galactose [goid 4380] [evidence ISS]; Catalysis of the reaction: UDP-galactose + glycoprotein-alpha-L-fucosyl-(1,2)-D-galactose = UDP + glycoprotein-alpha-D-galactosyl-(1,3)-(alpha-L-fucosyl-(1,2))-D-galactose [goid 4381] [evidence ISS]; Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor) [goid 16758] [evidence IEA]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62647136-S	ILMN_268562	FAM131B	NM_001025046.1	NM_001025046.1		500102	68163520	NM_001025046.1	Fam131b	NP_001020217.2	ILMN_1358522	3850358	S	1393	CCAAGAACTGAGACCCAGGCAATTAGGTGGCATGGTGGTGGGAGATGAGC	4	-	70085080-70085129	4q23	"Rattus norvegicus family with sequence similarity 131, member B (Fam131b), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62718008-S	ILMN_274838	LOC691762	XM_001079546.1	XM_001079546.1		691762	109513997	XM_001079546.1	LOC691762	XP_001079546.1	ILMN_1354120	3140435	S	533	TCAACGGCCAGACCCAGCATCATCTGGTCTCAGAAAGTGCAAGAGAGCTG	Un|NW_047990.1	-	506390-506414:507134-507158		"PREDICTED: Rattus norvegicus hypothetical protein LOC691762 (LOC691762), mRNA."
Transcription factor -> Other transcription factor;Nucleic acid binding	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Immunity and defense -> Interferon-mediated immunity;Oncogenesis	Rattus norvegicus	RefSeq	GI_62641611-S	ILMN_271221	IRF7	NM_001033691.1	NM_001033691.1		293624	76096317	NM_001033691.1	Irf7	NP_001028863.1	ILMN_1352469	4850408	S	1637	ACACATCTGGAAGGCGTGCAGCGTGAGGGTGTGTCCTCTCTGGACAGCAG	1	-	201456961-201457010	1q41	"Rattus norvegicus interferon regulatory factor 7 (Irf7), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence ISS]; An immune response mediated by immunoglobulins, whether cell-bound or in solution [goid 16064] [evidence ISS]; The chemical reactions and pathways resulting in the formation of any type I interferon. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families [goid 45351] [evidence ISS]"	The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC125013	MGC125013
Transferase -> Acyltransferase	Lipid, fatty acid and steroid metabolism -> Phospholipid metabolism	Rattus norvegicus	RefSeq	GI_62662891-S	ILMN_289479	AGPAT5_PREDICTED	XM_001074443.1	XM_001074443.1		306582	109504444	XM_001074443.1	Agpat5_predicted	XP_001074443.1	ILMN_1370753	2480315	S	1432	TGCAGTCACCGTCTCTTACCGATGGCCGCACATTGCATCACACTGTTTCC				16q12.5	"PREDICTED: Rattus norvegicus 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon) (predicted) (Agpat5_predicted), mRNA."
Signaling molecule -> Growth factor;Transcription factor -> Transcription cofactor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation	Rattus norvegicus	RefSeq	GI_19424221-S	ILMN_58449	HDGFL1	NM_133549.2	NM_133549.2		171074	76880466	NM_133549.2	Hdgfl1	NP_598233.2	ILMN_1371200	60056	S	1195	GTGGGAGATAAAGAGCAGGGACAACATTCAAGGGTCTGGGAGGGGCAGTC	17	+	45147677-45147726	17p11	"Rattus norvegicus hepatoma derived growth factor-like 1 (Hdgfl1), mRNA."				Hdgfrp1	Hdgfrp1
Receptor -> Cytokine receptor -> Other cytokine receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> Cytokine and chemokine mediated signaling pathway;Homeostasis -> Other homeostasis activities	Rattus norvegicus	RefSeq	GI_40538854-S	ILMN_283965	LEPROT	NM_020099.2	NM_020099.2		56766	40538854	NM_020099.2	Leprot	NP_064484.1	ILMN_1364359	5570358	S	1660	CAGAGCACTCTCCTTTGAGGCTTGTGGTCAGAGGAATGGACACACCAGGC	5	+	122327634-122327683	5q33	"Rattus norvegicus leptin receptor overlapping transcript (Leprot), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues [goid 8203] [evidence IEA]; Any process that stops or reduces the rate of hydrolase activity, the catalysis of the hydrolysis of various bonds [goid 51346] [evidence IEA]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Ob-Rgrp; Obrgrp	Ob-Rgrp; Obrgrp
		Rattus norvegicus	RefSeq	GI_27665133-S	ILMN_285912	RGD1559821_PREDICTED	XR_009247.1	XR_009247.1		304447	109497285	XR_009247.1	RGD1559821_predicted		ILMN_1348845	1740040	S	348	CGCTGTCCTGGGTGCTGAAATCCGTCATATCCTAGTCACGCTGGGCGAGA				12q14	"PREDICTED: Rattus norvegicus similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle (predicted) (RGD1559821_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62665945-S	ILMN_50743	LOC365566	XM_574750.1	XM_574750.1		365566	62665945	XM_574750.1	LOC365566	XP_574750.1	ILMN_1358480	6020632	S	587	GAAAAAGTTGGACAAGAAGCGAGCACTGAGGCGACTGTAGTGGGCTCTCT					"PREDICTED: Rattus norvegicus similar to Ubiquitin-conjugating enzyme E2S (LOC365566), mRNA."
Molecular function unclassified	Developmental processes -> Meiosis	Rattus norvegicus	RefSeq	GI_62667429-S	ILMN_268856	RGD1563270_PREDICTED	XM_217535.3	XM_217535.3		302172	62667429	XM_217535.3	RGD1563270_predicted	XP_217535.3	ILMN_1351244	1340064	S	713	CACGGCAGAGCCACAGCCTGAAAGCCCTTAAGCAGGAAAATGACAAGTTC	X	+	140652399-140652448	Xq36	"PREDICTED: Rattus norvegicus similar to synaptonemal complex protein 3 (predicted) (RGD1563270_predicted), mRNA."
Cytoskeletal protein -> Microtubule family cytoskeletal protein -> Microtubule binding motor protein	Intracellular protein traffic -> General vesicle transport;Neuronal activities -> Synaptic transmission;Cell cycle -> Mitosis -> Chromosome segregation;Cell proliferation and differentiation;Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_51948449-S	ILMN_276452	DCTN2	NM_001004239.1	NM_001004239.1		299850	51948449	NM_001004239.1	Dctn2	NP_001004239.1	ILMN_1374374	2640132	S	1526	GCCAGCTCTTGTCCAGTAAGTGCTTGCCTGCTGTGGGAGAGGACTGGATC	7	+	67239031-67239080	7q22	"Rattus norvegicus dynactin 2 (Dctn2), mRNA."	"A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules [goid 776] [evidence ISS]; A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules [goid 776] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence ISS]; A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle [goid 5813] [evidence IDA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence TAS]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence IEA]; A 20S multiprotein assembly of total mass about 1.2 MDa that activates dynein-based activity in vivo. A large structural component of the complex is an actin-like 40 nm filament composed of actin-related protein, to which other components attach [goid 5869] [evidence ISS]; A 20S multiprotein assembly of total mass about 1.2 MDa that activates dynein-based activity in vivo. A large structural component of the complex is an actin-like 40 nm filament composed of actin-related protein, to which other components attach [goid 5869] [evidence IDA]; A 20S multiprotein assembly of total mass about 1.2 MDa that activates dynein-based activity in vivo. A large structural component of the complex is an actin-like 40 nm filament composed of actin-related protein, to which other components attach [goid 5869] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]; The migrating motile tip of a growing nerve cell axon or dendrite [goid 30426] [evidence ISS]"	"Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins [goid 7017] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the microtubule spindle during a mitotic cell cycle [goid 7052] [evidence IDA]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence ISS]; Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother [goid 7067] [evidence IDA]; The multiplication or reproduction of cells, resulting in the expansion of a cell population [goid 8283] [evidence ISS]"	"Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]"	MGC93976	MGC93976
		Rattus norvegicus	RefSeq	GI_62717880-S	ILMN_53561	LOC363316	XM_343656.2	XM_343656.2		363316	62717880	XM_343656.2	LOC363316	XP_343657.2	ILMN_1349926	7040484	S	1317	CCAACAAGATAGATAAACCCTTAGCCAGACTAACGCGAGGACACAGAGAG					"PREDICTED: Rattus norvegicus similar to LRRG00135 (LOC363316), mRNA."
Transporter -> Cation transporter	Transport -> Ion transport -> Cation transport;Homeostasis	Rattus norvegicus	RefSeq	GI_6981557-S	ILMN_283430	SLC9A1	NM_012652.1	NM_012652.1		24782	6981557	NM_012652.1	Slc9a1	NP_036784.1	ILMN_1363067	5550341	S	4445	TTGCCATGCAAGGTGACATCGACAACCATGTACAAAGCCACCGCAGCCGC	5	-	151680779-151680828	5q36	"Rattus norvegicus solute carrier family 9 (sodium/hydrogen exchanger), member 1 (Slc9a1), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence TAS]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis [goid 16323] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IPI]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence TAS]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence ISS]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence TAS]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence IEA]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence ISS]; A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound [goid 7243] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic substance stimulus [goid 14070] [evidence IDA]; The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present [goid 16049] [evidence IEP]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEP]; Any process that activates or increases the frequency, rate or extent of anti-apoptosis [goid 45768] [evidence IMP]; The directed movement of charged atoms or small charged molecules into, out of, within or between cells [goid 6811] [evidence IEA]; The directed movement of sodium ions (Na+) into, out of, within or between cells [goid 6814] [evidence IEA]; Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion [goid 6885] [evidence IEA]"	"Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription [goid 8134] [evidence IDA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out) [goid 15299] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence TAS]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IMP]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence ISS]; Interacting selectively with sodium ions (Na+) [goid 31402] [evidence IEA]; Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy [goid 15297] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out) [goid 15299] [evidence IEA]; Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out) [goid 15385] [evidence IEA]"	Nhe1	Nhe1
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62662603-S	ILMN_272151	RGD1308517	NM_001037181.1	NM_001037181.1		290722	81295372	NM_001037181.1	RGD1308517	NP_001032258.1	ILMN_1361913	780070	S	1154	GGTGTGGATGTTGTGCCCTATGATAAAAAATACAGTGTTGAGGGGCCGGC	16	+	37151007-37151028:37158222-37158249	16p11	"Rattus norvegicus similar to KIAA1712 protein (RGD1308517), mRNA."				MGC125247	MGC125247
		Rattus norvegicus	RefSeq	GI_62653504-S	ILMN_284128	LOC500974	XR_009636.1	XR_009636.1		500974	109484507	XR_009636.1	LOC500974		ILMN_1365562	6420242	S	2002	CACATCCAGATGCTGCCGTTGGACTCTTCCTGGGAGCTCTTTCCACGATG				8q21	"PREDICTED: Rattus norvegicus similar to CDNA sequence BC024479 (LOC500974), misc RNA."
		Rattus norvegicus	RefSeq	GI_62657315-S	ILMN_57233	LOC498023	XM_573220.1	XM_573220.1		498023	62657315	XM_573220.1	LOC498023	XP_573220.1	ILMN_1349046	6180400	S	764	TGACACGGTTCCTCATCATATGATGATGCAGTCTGGACACAAAGGAACTG				10q32.2	"PREDICTED: Rattus norvegicus similar to solute carrier family 25, member 5 (LOC498023), mRNA."
Molecular function unclassified	Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_62651943-S	ILMN_67415	RGD1310212_PREDICTED	XM_234842.4	XM_234842.4		299557	109480317	XM_234842.4	RGD1310212_predicted	XP_234842.4	ILMN_1352658	4230204	S	2212	CCAGCTCCTTCCACCCTTCATACACTTTGGAGTGGGGGACAAGACCAAGG	7	-	13775194-13775243	7q11	"PREDICTED: Rattus norvegicus similar to KIAA1111-like protein (predicted) (RGD1310212_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_34863158-S	ILMN_280209	RGD1563029_PREDICTED	XR_007429.1	XR_007429.1		293952	109463894	XR_007429.1	RGD1563029_predicted		ILMN_1355331	6520176	S	381	CCGCTATAATCTGGACTCGAAGTTACGGGTGCCTGAAGCCCTGGAAGGAG				1q54	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110007C05 (predicted) (RGD1563029_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_46485434-S	ILMN_277438	PSBPC2	NM_207593.1	NM_207593.1		293731	46485434	NM_207593.1	Psbpc2	NP_997476.1	ILMN_1360459	5340114	S	66	GGTTGTTTGTTGCTATGAAGCTAATGGCCAGACCTTGGCGGGCGTCTGCC	1	+	212121831-212121850:212123485-212123514	1q43	"Rattus norvegicus prostatic steroid-binding protein C2 (Psbpc2), mRNA."	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence TAS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]		"Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence TAS]; Interacting selectively with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene [goid 5496] [evidence IEA]"	Psbp2	Psbp2
Transferase -> Nucleotidyltransferase	Carbohydrate metabolism -> Other polysaccharide metabolism;Lipid, fatty acid and steroid metabolism -> Lipid metabolism;Nucleoside, nucleotide and nucleic acid metabolism -> Pyrimidine metabolism	Rattus norvegicus	RefSeq	GI_57164104-S	ILMN_284894	CMAS	NM_001009419.1	NM_001009419.1		312826	57164104	NM_001009419.1	Cmas	NP_001009419.1	ILMN_2040694	5900554	S	1308	TGGTTGTAGTGTGGGGGAAGGGAGAACGAAGCCTTTTCCAGCCACTTTGC	4	+	180668859-180668908	4q44	"Rattus norvegicus cytidine monophosphate N-acetylneuraminic acid synthetase (Cmas), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria [goid 9103] [evidence IEA]; The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria [goid 9103] [evidence IEA]"	"Catalysis of the reaction: CTP + N-acylneuraminate = diphosphate + CMP-N-acylneuraminate [goid 8781] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]"	MGC105806	MGC105806
		Rattus norvegicus	RefSeq	GI_62651596-S	ILMN_49606	LOC503105	XM_578625.1	XM_578625.1		503105	62651596	XM_578625.1	LOC503105	XP_578625.1	ILMN_1355832	6350041	S	271	TCAAAGAGGCGTCAACATGTCCGCTTGCGAAGGCAGAAGACAGTGTGGTG					"PREDICTED: Rattus norvegicus similar to serine C-palmitoyltransferase (LOC503105), mRNA."
		Rattus norvegicus	RefSeq	GI_34854097-S	ILMN_63437	LOC502260	XM_577721.1	XM_577721.1		502260	62638722	XM_577721.1	LOC502260	XP_577721.1	ILMN_1370533	6100114	S	1950	CAGCACAGAGGTTTTAAGGGGTGGACCAGGAATATAGCAAATGCCCTGAT				1q12	"PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502260), mRNA."
		Rattus norvegicus	RefSeq	GI_62638722-S	ILMN_63437	LOC502260	XM_577721.1	XM_577721.1		502260	62638722	XM_577721.1	LOC502260	XP_577721.1	ILMN_1371673	1980167	S	272	AGGGCGAGTCTGTCCCCATCAGTGGCTGGCTAAGAGGATTCAAGGGATGG				1q12	"PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC502260), mRNA."
		Rattus norvegicus	RefSeq	GI_62667076-S	ILMN_65111	LOC302402	XM_228571.3	XM_228571.3		302402	62667076	XM_228571.3	LOC302402	XP_228571.2	ILMN_1369641	2970593	S	11	TTCTGATTGGCTGGGGCAAGCAGTGGCCGCAGCGGGCTAAGCCGGTATTC					"PREDICTED: Rattus norvegicus similar to hypoxia induced gene 1 (LOC302402), mRNA."
		Rattus norvegicus	RefSeq	GI_62650402-I	ILMN_57847	ZFP513_PREDICTED	XM_575994.1	XM_575994.1		313913	62650402	XM_575994.1	Zfp513_predicted	XP_575994.1	ILMN_1375604	2120059	S	172	CCCTGGTTCGAATTATGGGAACGGCTTGTGAGGGAGATTCCACAAGCACC				6q14	"PREDICTED: Rattus norvegicus zinc finger protein 513 (predicted) (Zfp513_predicted), mRNA."
Transcription factor -> Transcription cofactor;Select regulatory molecule -> Kinase modulator	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Signal transduction -> Other signal transduction	Rattus norvegicus	RefSeq	GI_62653218-S	ILMN_288296	YAP1	NM_001034002.2	NM_001034002.2		363014	85540437	NM_001034002.2	Yap1	NP_001029174.2	ILMN_1370771	1090301	S	1318	GGACCTTGGCACACTGGAAGGAGATGCAATGAACATAGAAGGGGAGGAGC	8	-	4780948-4780997	8q11	"Rattus norvegicus yes-associated protein 1 (Yap1), mRNA."			Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]	Yap	Yap
Kinase -> Other kinase	Lipid, fatty acid and steroid metabolism -> Lipid metabolism;Signal transduction -> Cell surface receptor mediated signal transduction -> Receptor protein tyrosine kinase signaling pathway;Signal transduction -> Intracellular signaling cascade;Apoptosis -> Inhibition of apoptosis	Rattus norvegicus	RefSeq	GI_16758235-S	ILMN_296182	PIK3CB	NM_053481.1	NM_053481.1		85243	16758235	NM_053481.1	Pik3cb	NP_445933.1	ILMN_1368644	50397	S	3139	GAGGCACTCAGGGAAAGCTGGACCACTAAGGTGAACTGGATGGCTCATAC	8	-	103886706-103886755	8q31	"Rattus norvegicus phosphoinositide-3-kinase, catalytic, beta polypeptide (Pik3cb), mRNA."	That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; A complex containing a heterodimer of a catalytic subunit and a regulatory (adaptor) subunit of any phosphoinositide 3-kinase (PI3K) [goid 5942] [evidence IEA]; The portion of the plasma membrane surrounding the brush border [goid 31526] [evidence IDA]	"Any process that modulates the frequency, rate or extent of attachment of a cell to the extracellular matrix [goid 1952] [evidence ISS]; The regulation of the levels, transport, and metabolism of calcium ions within a cell or between a cell and its external environment [goid 6874] [evidence ISS]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence ISS]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug [goid 30168] [evidence ISS]; The first few specialized divisions of an activated animal egg [goid 40016] [evidence ISS]; The process of introducing one or more phosphate groups into a phosphoinositide, a class of substances comprising phosphatidylinositol and its derivatives [goid 46854] [evidence IEA]; A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response [goid 48015] [evidence IEA]"	"Catalysis of the phosphorylation of myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol [goid 4428] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 3-phosphate [goid 16303] [evidence IDA]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 3-phosphate [goid 16303] [evidence ISS]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 3-phosphate [goid 16303] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor) [goid 16773] [evidence IEA]; Catalysis of the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring to generate the 3-phosphoinositides: phosphatidylinositol-3-phosphate [PI(3)P], phosphatidylinositol-3,4-bisphosphate [PI(3,4)P2] and phosphatidylinositol-3,4,5-trisphosphate [PI(3,4,5)P3] [goid 35004] [evidence NAS]; Interacting selectively with any of the insulin receptor substrate (IRS) proteins, adaptor proteins that bind to the transphosphorylated insulin and insulin-like growth factor receptors, are themselves phosphorylated and in turn recruit SH2 domain-containing signaling molecules to form a productive signaling complex [goid 43560] [evidence ISS]; Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate = ADP + 1-phosphatidyl-1D-myo-inositol 3,4,5-trisphosphate [goid 46934] [evidence IEA]"
Transporter -> Other transporter	Transport	Rattus norvegicus	RefSeq	GI_62661489-A	ILMN_277807	TM9SF1	NM_001012155.1	NM_001012155.1		361043	58865881	NM_001012155.1	Tm9sf1	NP_001012155.1	ILMN_1376407	3390273	S	1983	CTCGGCGGTCCAACATGTCAGGGGCAGTACAGACAGTAGAGTTCTTTGGC	15	-	33771878-33771927	15p13	"Rattus norvegicus transmembrane 9 superfamily member 1 (Tm9sf1), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"
		Rattus norvegicus	RefSeq	GI_62643474-S	ILMN_266890	RGD1560498_PREDICTED	XR_007776.1	XR_007776.1		499619	109466688	XR_007776.1	RGD1560498_predicted		ILMN_1357988	4150408	S	943	GGGGCTGGATCTCTCTCCACAATAGGGAAGCTGCTCACAGAAGGGTTTAG				2q31	"PREDICTED: Rattus norvegicus similar to Eukaryotic translation initiation factor 3 subunit 2 (eIF-3 beta) (predicted) (RGD1560498_predicted), mRNA."
Nucleic acid binding;Ligase -> Ubiquitin-protein ligase	Protein metabolism and modification -> Other protein metabolism;Developmental processes	Rattus norvegicus	RefSeq	GI_52138730-S	ILMN_58247	ZNF183	NM_001004445.1	NM_001004445.1		314313	52138730	NM_001004445.1	Znf183	NP_001004445.1	ILMN_1374129	770113	S	1060	TACCGAAAAGCGGAGGGTGGTACTTCTAACACCTCAGAAGACCCCGATGG				6q31	"Rattus norvegicus zinc finger protein 183 (RING finger, C3HC4 type) (Znf183), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62645836-S	ILMN_289674	LOC499886	NM_001024312.1	NM_001024312.1		499886	66730297	NM_001024312.1	LOC499886	NP_001019483.1	ILMN_1366943	1340685	S	1737	AGCTGAAGAGGGAAGATGGACTCACAGAGGACAAGGAGGGCCAATCCCGG	3	+	116199813-116199862	3q36	"Rattus norvegicus similar to hypothetical protein 4933411G11 (LOC499886), mRNA."
Defense/immunity protein -> Complement component	Immunity and defense -> Complement-mediated immunity	Rattus norvegicus	RefSeq	GI_62652707-S	ILMN_283911	C1QTNF6	NM_001034932.1	NM_001034932.1		315114	77917557	NM_001034932.1	C1qtnf6	NP_001030104.1	ILMN_1366657	3710377	S	496	TCCTCTCACTGCTGTTCGACAGGGTCTTCGTGAACACGGACGGCCACTTC	7	-	116481557-116481606	7q34	"Rattus norvegicus C1q and tumor necrosis factor related protein 6 (C1qtnf6), mRNA."	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]			MGC124704	MGC124704
Oxidoreductase -> Dehydrogenase	Nucleoside, nucleotide and nucleic acid metabolism -> Purine metabolism	Rattus norvegicus	RefSeq	GI_34855046-S	ILMN_65588	IMPDH1_PREDICTED	XM_342650.3	XM_342650.3		362329	109471840	XM_342650.3	Impdh1_predicted	XP_342651.3	ILMN_2039517	3990681	S	2489	GAGGGCCTGATGATGACCGCCTGCCCTTCATTCCTGACTCACCATTGTCC	4	-	56075360-56075409	4q22	"PREDICTED: Rattus norvegicus IMP (inosine monophosphate) dehydrogenase 1 (predicted) (Impdh1_predicted), mRNA."
Oxidoreductase -> Dehydrogenase	Nucleoside, nucleotide and nucleic acid metabolism -> Purine metabolism	Rattus norvegicus	RefSeq	GI_62646936-S	ILMN_65588	IMPDH1_PREDICTED	XM_342650.3	XM_342650.3		362329	109471840	XM_342650.3	Impdh1_predicted	XP_342651.3	ILMN_1365012	6650273	S	2570	GCTGCAGCTGAAGGCTTTAACTTTGCACACTTTGGGGTCACAATCGTGTC	4	-	56075279-56075328	4q22	"PREDICTED: Rattus norvegicus IMP (inosine monophosphate) dehydrogenase 1 (predicted) (Impdh1_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62644023-S	ILMN_55079	LOC502580	XM_578066.1	XM_578066.1		502580	62644023	XM_578066.1	LOC502580	XP_578066.1	ILMN_1361513	670193	S	453	AGCACTGTGGCTGCTTGTTACTTCACCTCCGGGGTTCTTACTGGAGCCTC					"PREDICTED: Rattus norvegicus similar to chromosome 1 open reading frame 51 (LOC502580), mRNA."
Nucleic acid binding -> Other DNA-binding protein;Transferase -> Methyltransferase	Nucleoside, nucleotide and nucleic acid metabolism -> Chromatin packaging and remodeling	Rattus norvegicus	RefSeq	GI_62643767-S	ILMN_63902	ASH1L_PREDICTED	XM_227409.4	XM_227409.4		310638	109465071	XM_227409.4	Ash1l_predicted	XP_227409.4	ILMN_1369891	2690044	S	8889	AGGCACAGCCAGAGGGAACGGCTCAACCAGATCCTGCTCAACCTCCTGGA	2	+	181148810-181148859	2q34	"PREDICTED: Rattus norvegicus ash1 (absent, small, or homeotic)-like (Drosophila) (predicted) (Ash1l_predicted), mRNA."
Select regulatory molecule -> G-protein -> Small GTPase	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62646767-S	ILMN_57577	CLDN12_PREDICTED	XM_231402.4	XM_231402.4		312054	109471685	XM_231402.4	Cldn12_predicted	XP_231402.4	ILMN_1365458	5700026	S	1461	CACGGGTGAGCCTGCAGTGCATTATGTTCAAGGAAGCCAGGCAAGCACAG	4	+	25179646-25179695	4q12	"PREDICTED: Rattus norvegicus claudin 12 (predicted) (Cldn12_predicted), mRNA."
Select regulatory molecule -> G-protein modulator	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62645556-S	ILMN_277805	RGD1309107	XM_001074602.1	XM_001074602.1		296060	109470428	XM_001074602.1	RGD1309107	XP_001074602.1	ILMN_1353170	2350121	S	3762	GGCCTCAGTGGTGTTGGAACCCTTACTCTTGTTGGGACAGAGGGATTTTG				3q34	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6530401L14 gene (RGD1309107), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62641264-S	ILMN_275003	LOC361646	XM_001079791.1	XM_001079791.1		361646	109462851	XM_001079791.1	LOC361646	XP_001079791.1	ILMN_1358798	6450139	S	5813	TCCCAGGAGAGCCATCAAACCAACTCTAGGCGAATCAGGGCCACTCCTTT				1q36	"PREDICTED: Rattus norvegicus similar to K04F10.2 (LOC361646), mRNA."
		Rattus norvegicus	Unigene	Rn.9547	ILMN_161194	RN.9547	Rn.9547		Rn.9547		82517147	DV723824			ILMN_1530534	6180139	S	351	AAATCAAGTGTTACTCTCATGTTTCTCACCCTATCATCTCATTTTTTCCT					"RVL15748 Wackym-Soares normalized rat vestibular cDNA library Rattus norvegicus cDNA 5', mRNA"
Nucleic acid binding;Hydrolase -> Deacetylase	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Apoptosis -> Inhibition of apoptosis;Cell cycle -> Cell cycle control	Rattus norvegicus	RefSeq	GI_62647830-S	ILMN_274416	HDAC11_PREDICTED	XM_001073226.1	XM_001073226.1		297453	109473867	XM_001073226.1	Hdac11_predicted	XP_001073226.1	ILMN_1358077	5910463	S	2522	ACAGGCTCCAGGTTGTTGCTGTGTGTTCTGAGGTAGACAGACCTGCCTCC				4q34	"PREDICTED: Rattus norvegicus histone deacetylase 11 (predicted) (Hdac11_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576256-S	ILMN_285861	OLR1307	NM_001000519.1	NM_001000519.1		315573	47576256	NM_001000519.1	Olr1307	NP_001000519.1	ILMN_1373459	70711	S	416	GTGCCATCCTGGCCACAGGGACATCATTTTTTGGCTGCATTCAGGCCACT	8	-	42437706-42437755	8q22	"Rattus norvegicus olfactory receptor 1307 (Olr1307), mRNA."	"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]"	Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	tpcr18	tpcr18
Select calcium binding protein -> Calmodulin related protein	Muscle contraction;Developmental processes -> Mesoderm development -> Muscle development	Rattus norvegicus	RefSeq	GI_11968063-S	ILMN_268184	PVALB	NM_022499.1	NM_022499.1		25269	11968063	NM_022499.1	Pvalb	NP_071944.1	ILMN_1367420	2030541	S	677	GTGAGAGAGAGCGAAGGACCACGCCCTGATATTTCCTGCCTGCTTGGTAC	7	-	116114905-116114954	7q34	"Rattus norvegicus parvalbumin (Pvalb), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence ISS]; The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter [goid 30424] [evidence IEA]"		Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]	PALB1; Pva	PALB1; Pva
		Rattus norvegicus	Unigene	Rn.13357	ILMN_161605	RN.13357	Rn.13357		Rn.13357		8505502	BE113397			ILMN_1530559	3130717	S	105	TGAACTCATGGCTACAATCTTACAGAGAACATGGGAACAAAAAATATAAA					"UI-R-BJ1-awe-h-04-0-UI.s1 UI-R-BJ1 Rattus norvegicus cDNA clone UI-R-BJ1-awe-h-04-0-UI 3', mRNA"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47576550-S	ILMN_270953	OLR163	NM_001000171.1	NM_001000171.1		293309	47576550	NM_001000171.1	Olr163	NP_001000171.1	ILMN_1374401	4540731	S	206	CTCTGACAGATCTTGTCATATGCTCCAGTACAATCCCTAAAGCCCTCTGC	1	+	162349517-162349566	1q33	"Rattus norvegicus olfactory receptor 163 (Olr163), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr163; ratchr1-162444789-162445754_ORF	Olr163; ratchr1-162444789-162445754_ORF
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62642158-S	ILMN_51616	TRPD52L3_PREDICTED	XM_219798.4	XM_219798.4		293894	109460024	XM_219798.4	Trpd52l3_predicted	XP_219798.4	ILMN_1368503	1090458	S	547	AAGTCAAGAGTCGCGGGTGGCAGAGAGCTCGGCAGTGGCCTTCTTCCTTC	1	+	233744275-233744324	1q52	"PREDICTED: Rattus norvegicus tumor protein D52-like 3 (predicted) (Trpd52l3_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62079224-S	ILMN_283080	PDZD7_PREDICTED	XM_001057829.1	XM_001057829.1		293996	109463929	XM_001057829.1	Pdzd7_predicted	XP_001057829.1	ILMN_1367435	1170176	S	2232	GGAAAGGGGGCTAACCTGTCCCCACATTCTACCTGCCTGAAGCCAGAGAG				1q54	"PREDICTED: Rattus norvegicus PDZ domain containing 7 (predicted) (Pdzd7_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62642382-S	ILMN_283080	PDZD7_PREDICTED	XM_001057829.1	XM_001057829.1		293996	109463929	XM_001057829.1	Pdzd7_predicted	XP_001057829.1	ILMN_1362205	940279	S	1173	CCAGGGCCTTGCTGCCGACAGTTCTTCCGCCCATGGACCCATTGAAGATA				1q54	"PREDICTED: Rattus norvegicus PDZ domain containing 7 (predicted) (Pdzd7_predicted), mRNA."
Receptor -> Cytokine receptor -> Interferon receptor;Defense/immunity protein	Signal transduction -> Cell surface receptor mediated signal transduction -> Cytokine and chemokine mediated signaling pathway;Signal transduction -> Intracellular signaling cascade -> MAPKKK cascade;Signal transduction -> Intracellular signaling cascade -> JAK-STAT cascade;Signal transduction -> Cell communication -> Ligand-mediated signaling;Immunity and defense;Apoptosis -> Induction of apoptosis	Rattus norvegicus	RefSeq	GI_62657636-S	ILMN_60094	IFNGR2_PREDICTED	XM_340967.3	XM_340967.3		360697	109492935	XM_340967.3	Ifngr2_predicted	XP_340968.1	ILMN_1356831	3520037	S	1402	CTGGTTCCTCGGCTTCACTCTGGAAAATGAGTTGTCCCAGGCATCCCAGC	11	+	31525788-31525837	11q11	"PREDICTED: Rattus norvegicus interferon gamma receptor 2 (predicted) (Ifngr2_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47577840-S	ILMN_291374	OLR1201	NM_001000818.1	NM_001000818.1		405106	47577840	NM_001000818.1	Olr1201	NP_001000818.1	ILMN_1363905	4210333	S	761	GGGCATTCATGTATCTCAAACCTTCTTCCCTTTTGCCTATGAACCAGGGG	8	+	39287237-39287286	8q21	"Rattus norvegicus olfactory receptor 1201 (Olr1201), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr1201	Olr1201
Transcription factor -> Zinc finger transcription factor -> KRAB box transcription factor	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62645995-S	ILMN_287273	RGD1562321_PREDICTED	XM_001057286.1	XM_001057286.1		311508	109470974	XM_001057286.1	RGD1562321_predicted	XP_001057286.1	ILMN_1349321	3840408	S	1553	GCGCTTAAGACCCACCTGAGAGTTCATACAGGGGAAAGACCTTTTGTCTG				3q41	"PREDICTED: Rattus norvegicus similar to zinc finger protein 336 (predicted) (RGD1562321_predicted), mRNA."
Transporter;Select regulatory molecule -> G-protein -> Small GTPase	Intracellular protein traffic -> Nuclear transport	Rattus norvegicus	RefSeq	GI_62641128-S	ILMN_48178	IPO7_PREDICTED	XM_219265.4	XM_219265.4		308939	109459232	XM_219265.4	Ipo7_predicted	XP_219265.2	ILMN_1349724	130577	S	4473	TGCAGAAATAAGCCAGCAACAACAGGGTAGCGGGGTGGGCTTCTCCCCTC	1	+	167697392-167697441	1q33	"PREDICTED: Rattus norvegicus importin 7 (predicted) (Ipo7_predicted), mRNA."
Oxidoreductase -> Peroxidase	Lipid, fatty acid and steroid metabolism -> Steroid metabolism;Immunity and defense -> Stress response;Immunity and defense -> Detoxification;Immunity and defense -> Antioxidation and free radical removal	Rattus norvegicus	RefSeq	GI_34577115-S	ILMN_293988	GPX2	NM_183403.1	NM_183403.1		29326	34577115	NM_183403.1	Gpx2	NP_899653.1	ILMN_1368854	6980484	S	858	AGTCCACTGGGGGCTCTAAGTCTGGGGTAGGTGCTAGGCCTTCTTCACAG	6	-	99372520-99372569	6q24	"Rattus norvegicus glutathione peroxidase 2 (Gpx2), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"A homeostatic process by which an organism modulates its internal body temperature [goid 1659] [evidence ISS]; Any process that stops, prevents, or reduces the frequency, rate, or extent of an inflammatory response to an antigenic stimulus [goid 2862] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals [goid 6979] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a symbiotic bacterium, a bacterium living in close physical association with another organism [goid 9609] [evidence ISS]; An interaction between two organisms living together in more or less intimate association. The term symbiont is used for the smaller (macro) of the two members of a symbiosis; the various forms of symbiosis include parasitism, commensalism and mutualism [goid 51702] [evidence ISS]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]"	"Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence IDA]; Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence ISS]; Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O [goid 4602] [evidence IEA]; Interacting selectively with selenium (Se) [goid 8430] [evidence IEA]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]"	GPX-GI	GPX-GI
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576964-S	ILMN_300356	OLR25	NM_001000692.1	NM_001000692.1		404897	47576964	NM_001000692.1	Olr25	NP_001000692.1	ILMN_1362926	670575	S	595	TTGACTGCCTTTGGGCTCAGTGGTACCTGCTTTGCCTTCATTGCCATTTC	1	+	142740706-142740755	1q32	"Rattus norvegicus olfactory receptor 25 (Olr25), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr25	Olr25
Nucleic acid binding -> Damaged DNA-binding protein	Nucleoside, nucleotide and nucleic acid metabolism -> DNA metabolism -> DNA repair	Rattus norvegicus	RefSeq	GI_34935126-S	ILMN_279442	XPA_PREDICTED	XM_001071899.1	XM_001071899.1		298074	109476438	XM_001071899.1	Xpa_predicted	XP_001071899.1	ILMN_1355648	3610458	S	1336	GCGGGCTCTTGAAGTTTGGGGTAGCCAGGAAGCTCTGGAAGATGCAAAGG				5q22	"PREDICTED: Rattus norvegicus xeroderma pigmentosum, complementation group A (predicted) (Xpa_predicted), mRNA."
		Rattus norvegicus	Unigene	Rn.17029	ILMN_160859	RN.17029	Rn.17029		Rn.17029		57597676	CX570645			ILMN_1530398	3130594	S	281	TTTAGAGTTTAGTCAATTTCTCAATAGGTCAAAAAGCAAAAGATGCCATG					"RVL1816 Wackym-Soares normalized rat vestibular cDNA library Rattus norvegicus cDNA 5', mRNA"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62644731-S	ILMN_273595	RGD1306215_PREDICTED	XM_001073540.1	XM_001073540.1		296565	109469434	XM_001073540.1	RGD1306215_predicted	XP_001073540.1	ILMN_1368078	1940563	S	2118	CCATTAGCCCCAGGAAGAGCACCCAGCCAGCAGGCACTCAGTTCTTACCA				3p13	"PREDICTED: Rattus norvegicus similar to hypothetical protein MGC36831 (predicted) (RGD1306215_predicted), mRNA."
Transferase;Hydrolase -> Other hydrolase;Ligase	Protein metabolism and modification -> Amino acid activation	Rattus norvegicus	RefSeq	GI_62666317	ILMN_286892	QRSL1	XM_001067712.1	XM_001067712.1		309911	109510277	XM_001067712.1	Qrsl1	XP_001067712.1	ILMN_1650024	6220390	S	1845	CCAAGTTCACCGCCAACCCCGTCTGTCCTGGGGATCACGTTCTCAAATCC				20q13	"PREDICTED: Rattus norvegicus glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 (Qrsl1), mRNA."		The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]	"Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6 [goid 16874] [evidence IEA]; Catalysis of the transfer of the amide nitrogen of glutamine to a variety of substrates. GATases catalyze two separate reactions at two active sites, which are located either on a single polypeptide chain or on different subunits. In the glutaminase reaction, glutamine is hydrolyzed to glutamate and ammonia, which is added to an acceptor substrate in the synthase reaction [goid 16884] [evidence IEA]; Catalysis of the transfer of the amide nitrogen of glutamine to a variety of substrates. GATases catalyze two separate reactions at two active sites, which are located either on a single polypeptide chain or on different subunits. In the glutaminase reaction, glutamine is hydrolyzed to glutamate and ammonia, which is added to an acceptor substrate in the synthase reaction [goid 16884] [evidence IEA]"
Miscellaneous function -> Other miscellaneous function protein	Immunity and defense -> Other immune and defense;Miscellaneous	Rattus norvegicus	RefSeq	GI_62657922-S	ILMN_61359	LOC303919	XM_221433.3	XM_221433.3		303919	62657922	XM_221433.3	LOC303919	XP_221433.3	ILMN_1362102	7100706	S	437	AGGCAACCAGCTGCAGAGCATCCCCGCCGAGATCGAGAACTTGCAGAGGT				11q21	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA C330018J07 gene (predicted) (LOC303919), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_19705558-S	ILMN_282492	HSPBAP1	NM_134419.1	NM_134419.1		171460	19705558	NM_134419.1	Hspbap1	NP_599246.1	ILMN_1351640	5360551	S	1213	TCCTGTGACACCAGCATCGGAAGAGAGAGGAGGCGCACTGGAAGGAGACA	11	-	66774443-66774492	11q22	"Rattus norvegicus Hspb associated protein 1 (Hspbap1), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"			Pass1	Pass1
Oxidoreductase -> Reductase	Other metabolism	Rattus norvegicus	RefSeq	GI_7106239-S	ILMN_280246	AKR7A3	NM_013215.1	NM_013215.1		26760	7106239	NM_013215.1	Akr7a3	NP_037347.1	ILMN_1371516	2370315	S	1046	TTCCGCTAAGATACATCTGCCTTGGGGATGGCGCAGCTTACTGCCTGCCC	5	+	158147303-158147305:158147306-158147352	5q36	"Rattus norvegicus aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase) (Akr7a3), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus [goid 9636] [evidence IEA]; The chemical reactions and pathways involving aflatoxin, a fungal metabolite found as a contaminant in moldy grains that induces liver cancer. Aflatoxin induces a G to T transversion at codon 249 of p53, leading to its inactivation. Aflatoxin is converted to a chemical carcinogen by P450 [goid 46222] [evidence IDA]; The chemical reactions and pathways resulting in the breakdown of aflatoxin, a fungal metabolite found as a contaminant in moldy grains that induces liver cancer. Aflatoxin induces a G to T transversion at codon 249 of p53, leading to its inactivation. Aflatoxin is converted to a chemical carcinogen by P450 [goid 46223] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]"	"Catalysis of the reaction: an alditol + NADP+ = an aldose + NADPH + H+ [goid 4032] [evidence IDA]; Catalysis of the NADPH-dependent reduction of carbonyl compounds [goid 4033] [evidence IMP]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]"	Afar; Akr7a1	Afar; Akr7a1
Signaling molecule -> Growth factor	Signal transduction -> Cell surface receptor mediated signal transduction;Signal transduction -> Intracellular signaling cascade -> MAPKKK cascade;Signal transduction -> Cell communication -> Ligand-mediated signaling;Developmental processes -> Ectoderm development -> Neurogenesis	Rattus norvegicus	RefSeq	GI_18543366-S	ILMN_291075	FGF15	NM_130753.1	NM_130753.1		170582	18543366	NM_130753.1	Fgf15	NP_570109.1	ILMN_1358250	2970725	S	335	CCGACGGCAAGATATACGGGCTGATTCGCTACTCGGAGGAAGACTGTACC	1	+	205325406-205325428:205327879-205327905	1q42	"Rattus norvegicus fibroblast growth factor 15 (Fgf15), mRNA."	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence ISS]	"The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence IEA]; The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo [goid 1755] [evidence ISS]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence IEA]; The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood [goid 7507] [evidence ISS]"	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation [goid 8083] [evidence IEA]
Lyase -> Cyclase -> Adenylate cyclase	Nucleoside, nucleotide and nucleic acid metabolism -> Metabolism of cyclic nucleotides	Rattus norvegicus	RefSeq	GI_6978446-S	ILMN_58261	ADCY6	NM_012821.2	NM_012821.2		25289	77020245	NM_012821.2	Adcy6	NP_036953.2	ILMN_1362372	1690088	S	4130	CTGGCCTGTGTCAGCAGCATTTGTCTTGGGCACTCCCAGTACCAGCCAAG	7	-	137341647-137341696	7q36	"Rattus norvegicus adenylate cyclase 6 (Adcy6), mRNA."	"That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [evidence IDA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; The outer membrane of a muscle fiber, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers [goid 42383] [evidence IDA]; Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 44424] [evidence IDA]; Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions [goid 45121] [evidence IDA]"	"The chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 6171] [evidence IDA]; The chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) [goid 6171] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]"	"Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate [goid 4016] [evidence IDA]; Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate [goid 4016] [evidence IEA]; Interacting selectively with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function [goid 5102] [evidence IPI]"	ADCYB; ACVI	ADCYB; ACVI
		Rattus norvegicus	RefSeq	GI_62647658-S	ILMN_54001	LOC500223	XM_575574.1	XM_575574.1		500223	62647658	XM_575574.1	LOC500223	XP_575574.1	ILMN_1371153	5130170	S	1301	CCTGGAGCTGGGGCTCACTACAACCCTCTGCAAGTTGGGAGCCATCTGTA				4q34	"PREDICTED: Rattus norvegicus similar to D6MM5e protein (LOC500223), mRNA."
Transporter	Lipid, fatty acid and steroid metabolism -> Fatty acid metabolism;Lipid, fatty acid and steroid metabolism -> Lipid and fatty acid transport;Transport -> Lipid and fatty acid transport;Other metabolism	Rattus norvegicus	RefSeq	GI_62664479-S	ILMN_60024	SLC27A6_PREDICTED	XM_225919.4	XM_225919.4		291582	109506659	XM_225919.4	Slc27a6_predicted	XP_225919.3	ILMN_1364102	2450673	S	1635	GGTGACATCACTACCAGCTTATGCCTGCCCACGGTTTCTAAGAATTCAGG	18	+	54408303-54408351:54411601-54411601	18q12.1	"PREDICTED: Rattus norvegicus solute carrier family 27 (fatty acid transporter), member 6 (predicted) (Slc27a6_predicted), mRNA."
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling	Rattus norvegicus	RefSeq	GI_62641879-A	ILMN_293734	GPR44	NM_001012070.1	NM_001012070.1		309212	58865713	NM_001012070.1	Gpr44	NP_001012070.1	ILMN_1376314	2760725	S	956	TGTCCCGACATGTTGCACAAGCTGAGGCGCTCGCTACTCACGGTGCTTGA	1	+	213438157-213438206	1q43	"Rattus norvegicus G protein-coupled receptor 44 (Gpr44), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence IEA]; The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis) [goid 6935] [evidence ISS]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7193] [evidence IEA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, followed by inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP [goid 7193] [evidence ISS]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence IEA]; A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response [goid 19722] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 45745] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity [goid 45745] [evidence ISS]"	"Combining with prostaglandin J (PGJ(2)), a metabolite of prostaglandin D (PGD(2)) to initiate a change in cell activity [goid 1785] [evidence IEA]; Combining with prostaglandin J (PGJ(2)), a metabolite of prostaglandin D (PGD(2)) to initiate a change in cell activity [goid 1785] [evidence ISS]; Combining with an extracellular or intracellular messenger to initiate a change in cell activity [goid 4872] [evidence IEA]; A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers [goid 4930] [evidence ISS]; Combining with prostaglandin D (PGD(2)) to initiate a change in cell activity [goid 4956] [evidence IEA]; Combining with prostaglandin D (PGD(2)) to initiate a change in cell activity [goid 4956] [evidence ISS]; Combining with prostaglandin F (PGF (2-alpha)) to initiate a change in cell activity [goid 4958] [evidence IEA]; Combining with prostaglandin F (PGF (2-alpha)) to initiate a change in cell activity [goid 4958] [evidence ISS]; Combining with an N-formyl peptide to initiate a change in cell activity [goid 4982] [evidence IEA]"
		Rattus norvegicus	RefSeq	GI_62651376-S	ILMN_60530	LOC500744	XM_576123.1	XM_576123.1		500744	62651376	XM_576123.1	LOC500744	XP_576123.1	ILMN_1367304	1170348	S	230	CTGGAGTGGATGGGATATATAAACAGTGCAGGCAGCACTAACTACAACCC				6q33	"PREDICTED: Rattus norvegicus similar to immunoglobulin gamma 1 chain (LOC500744), mRNA."
		Rattus norvegicus	RefSeq	GI_62661888-S	ILMN_66447	LOC501988	XM_577416.1	XM_577416.1		501988	62661888	XM_577416.1	LOC501988	XP_577416.1	ILMN_1354831	4280504	S	628	GCAGCCTGTACACAAACATTCAGCTGGGAGGAAGCAATGGAGACTCGGTG					"PREDICTED: Rattus norvegicus similar to TRAV6-5 (LOC501988), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47577060-S	ILMN_273479	OLR773	NM_001000373.1	NM_001000373.1		296026	47577060	NM_001000373.1	Olr773	NP_001000373.1	ILMN_1349084	6370097	S	596	TGTATGCTGACTGTGGGGTTGTAGGTGTAACCTGTTTTATTCTGTTGCTC	3	+	97325219-97325268	3q34	"Rattus norvegicus olfactory receptor 773 (Olr773), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]	Olr773; ratchr3-97221052-97221990_ORF	Olr773; ratchr3-97221052-97221990_ORF
Miscellaneous function -> Structural protein	Sensory perception -> Vision;Developmental processes	Rattus norvegicus	RefSeq	GI_62655161-S	ILMN_69790	CRYGB_MAPPED	XM_217421.4	XM_217421.4		301468	109486211	XM_217421.4	Crygb_mapped	XP_217421.4	ILMN_1362063	1170017	S	478	CCGGGAGAGTACAGGAGATATCTTGACTGGGGGGCTGCAAACGCCAAAGT	9	-	63731004-63731053	9q32	"PREDICTED: Rattus norvegicus crystallin, gamma B (mapped) (Crygb_mapped), mRNA."
		Rattus norvegicus	RefSeq	GI_62640886-S	ILMN_59267	LOC499201	XM_579934.1	XM_579934.1		499201	62640886	XM_579934.1	LOC499201	XP_579934.1	ILMN_1356608	2480176	S	343	CGGGATGACGTGGCTTTGGAGGGCATCTCTGGGCGAGTATCTCTCTGAGT					"PREDICTED: Rattus norvegicus hypothetical gene supported by BC061525 (LOC499201), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62658011-S	ILMN_280135	RGD1562500_PREDICTED	XM_001073075.1	XM_001073075.1		498096	109494524	XM_001073075.1	RGD1562500_predicted	XP_001073075.1	ILMN_1370896	4920369	S	514	GCTGTTCAGATCATCGAGAAGGGGAAAGCAGCAAGGACCCCTGAAACCTC				11q22	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310010M20 (predicted) (RGD1562500_predicted), mRNA."
Transferase -> Acyltransferase	Lipid, fatty acid and steroid metabolism -> Lipid metabolism;Lipid, fatty acid and steroid metabolism -> Steroid metabolism -> Cholesterol metabolism;Lipid, fatty acid and steroid metabolism -> Steroid metabolism -> Other steroid metabolism;Other metabolism	Rattus norvegicus	RefSeq	GI_9506590-S	ILMN_52686	FDFT1	NM_019238.2	NM_019238.2		29580	82880669	NM_019238.2	Fdft1	NP_062111.1	ILMN_1358542	610056	S	1146	GCAAGGCCAAGCAGCTCATCTCCAACATCAGGACGCAGAGCCTTCCCAAT	15	-	42427299-42427348	15p12	"Rattus norvegicus farnesyl diphosphate farnesyl transferase 1 (Fdft1), mRNA."	"The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence ISS]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IDA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence TAS]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IEA]; The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones [goid 6695] [evidence IMP]; The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues [goid 8299] [evidence IEA]; The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones [goid 9058] [evidence IEA]; The chemical reactions and pathways involving farnesyl diphosphate, an intermediate in carotenoid, sesquiterpene, squalene and sterol biosynthesis, as well as a substrate in protein farnesylation [goid 45338] [evidence IMP]; The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons [goid 55114] [evidence IEA]"	"Interacting selectively with magnesium (Mg) ions [goid 287] [evidence IEA]; Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate [goid 4310] [evidence IDA]; Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate [goid 4310] [evidence IEA]; Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate [goid 4310] [evidence IMP]; Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate [goid 4310] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]"	MGC93486	MGC93486
Transferase -> Glycosyltransferase	Carbohydrate metabolism -> Other polysaccharide metabolism;Protein metabolism and modification -> Protein modification -> Protein glycosylation	Rattus norvegicus	RefSeq	GI_62662202-S	ILMN_295522	GALNTL2_PREDICTED	XM_001061731.1	XM_001061731.1		306268	109503800	XM_001061731.1	Galntl2_predicted	XP_001061731.1	ILMN_1374327	6350358	S	1950	CTGGGATGCCCCATGACACTGGCTCCTTGCAGTAACAACCGGCAGCAACA				16p16	"PREDICTED: Rattus norvegicus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2 (predicted) (Galntl2_predicted), mRNA."
Phosphatase -> Protein phosphatase	Biological process unclassified	Rattus norvegicus	RefSeq	GI_55926138-S	ILMN_290541	PPP2R1A	NM_057140.1	NM_057140.1		117281	55926138	NM_057140.1	Ppp2r1a	NP_476481.1	ILMN_1371662	4730195	S	1961	GGCTGGGGCAGTACAAGTTGGGGCAGGACAGCAGCCTGAAAAGAAGGTCT	1	+	58461215-58461264	1q12	"Rattus norvegicus protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform (Ppp2r1a), mRNA."	"A heterodimer with protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic and regulatory subunits [goid 159] [evidence ISS]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]"		"Interacting selectively with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen [goid 3823] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with a nonidentical protein to form a heterodimer [goid 46982] [evidence ISS]"	PR65; MGC95083	PR65; MGC95083
Transfer/carrier protein -> Other transfer/carrier protein	Developmental processes -> Gametogenesis -> Spermatogenesis and motility	Rattus norvegicus	RefSeq	GI_62644733-S	ILMN_283920	LOC687251	XM_001077710.1	XM_001077710.1		687251	109469554	XM_001077710.1	LOC687251	XP_001077710.1	ILMN_1351442	780215	S	206	AGCTGAGAGACAACAGTGAGTTTCAGGTGACCAACTCCATGACTCGGGGC					"PREDICTED: Rattus norvegicus similar to lipocalin 12 (LOC687251), mRNA."
		Rattus norvegicus	RefSeq	GI_62657266-I	ILMN_54737	SLC16A6	XM_573214.1	XM_573214.1		303772	62657266	XM_573214.1	Slc16a6	XP_573214.1	ILMN_1375716	4150576	S	58	CTGGCCCACGCCCTAAGGGGTTAAACCTTTTTTCTCCTGTTACGGAGCGG				10q32.1	"PREDICTED: Rattus norvegicus solute carrier family 16 (monocarboxylic acid transporters), member 6 (Slc16a6), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	"The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism [goid 6810] [evidence IEA]"	"Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells [goid 5215] [evidence IEA]"
Transfer/carrier protein	Lipid, fatty acid and steroid metabolism -> Lipid and fatty acid transport;Transport -> Lipid and fatty acid transport;Lipid, fatty acid and steroid metabolism -> Steroid metabolism -> Cholesterol metabolism	Rattus norvegicus	RefSeq	GI_62641906-S	ILMN_296335	OSBP_PREDICTED	XM_001075837.1	XM_001075837.1		365410	109463605	XM_001075837.1	Osbp_predicted	XP_001075837.1	ILMN_1361792	6860452	S	2299	AGCACTGTGGTTTGAGCGGAAGAAGGACCCTGTCACCAAGGAGCTAACCC				1q43	"PREDICTED: Rattus norvegicus oxysterol binding protein (predicted) (Osbp_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62638429-I	ILMN_49095	TRIP13_PREDICTED	XM_574293.1	XM_574293.1		292206	62638429	XM_574293.1	Trip13_predicted	XP_574293.1	ILMN_1375658	430369	S	1872	GCACCGGATGCTGTGGAATGGGTGAGAAAGACGTGCTCCTGTGATACAGA				1p11	"PREDICTED: Rattus norvegicus thyroid hormone receptor interactor 13 (predicted) (Trip13_predicted), mRNA."
Ligase -> Ubiquitin-protein ligase	Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_62653752-S	ILMN_268015	RGD1562602_PREDICTED	XM_001074703.1	XM_001074703.1		315713	109484800	XM_001074703.1	RGD1562602_predicted	XP_001074703.1	ILMN_1359403	870390	S	2568	CCGCAGCAACCGGCAAGAGGGCTTGAAGAAGTATGTCCACTATCTGAGCC				8q24	"PREDICTED: Rattus norvegicus similar to promyelocytic leukemia (predicted) (RGD1562602_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62658537-S	ILMN_273823	RGD1311660_PREDICTED	XM_001074468.1	XM_001074468.1		288518	109496672	XM_001074468.1	RGD1311660_predicted	XP_001074468.1	ILMN_1368677	540082	S	2505	ACCGTGGTGTATGTACTGGCCTCAGGGAGCAGGAGAGGTGATTTTGATGC				12q11	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1110007L15 (predicted) (RGD1311660_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62640855-S	ILMN_57649	LOC502347	XM_577815.1	XM_577815.1		502347	62640855	XM_577815.1	LOC502347	XP_577815.1	ILMN_1357653	3610136	S	844	GCCCTGCAGCGAGTGATCTGAACTGTGGAACCAGCTCTCCATCTTGTCCC					"PREDICTED: Rattus norvegicus similar to RNA helicase GLH-2 (LOC502347), mRNA."
		Rattus norvegicus	RefSeq	GI_62655234-S	ILMN_51364	GLB1L_PREDICTED	XM_217443.3	XM_217443.3		301525	62655234	XM_217443.3	Glb1l_predicted	XP_217443.3	ILMN_1364521	6200132	S	1771	GGACAATGCGGGGTCCACAACAGACCCTATACGTGCCAAGACCTCTGCTG					"PREDICTED: Rattus norvegicus galactosidase, beta 1-like (predicted) (Glb1l_predicted), mRNA."
	Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_8394059-S	ILMN_271902	PSMA1	NM_017278.1	NM_017278.1		29668	8394059	NM_017278.1	Psma1	NP_058974.1	ILMN_1349689	2760717	S	823	GCCTTCACAGGCTGCTGATGAACCTGCAGAAAAAGCTGATGAACCAATGG	1	-	172238064-172238113	1q34	"Rattus norvegicus proteasome (prosome, macropain) subunit, alpha type 1 (Psma1), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]"	"The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]"	Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]
Cell adhesion molecule -> CAM family adhesion molecule	Cell adhesion	Rattus norvegicus	RefSeq	GI_62653819-S	ILMN_271428	PUNC_PREDICTED	XM_001075191.1	XM_001075191.1		315759	109484844	XM_001075191.1	Punc_predicted	XP_001075191.1	ILMN_1355847	1580110	S	1932	CTGGTATCCTGACCCTGAATGGAGTGAACCGAGGAGAAGGGGGCCAGCTA				8q24	"PREDICTED: Rattus norvegicus putative neuronal cell adhesion molecule (predicted) (Punc_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62649249-S	ILMN_65327	LOC500503	XM_580076.1	XM_580076.1		500503	62649249	XM_580076.1	LOC500503	XP_580076.1	ILMN_1356729	7050537	S	791	TCCCCGCTCGATGGTGGATTCATATCCTGTGCGGCCTCTAGGAAGCGCTA					"PREDICTED: Rattus norvegicus LOC500503 (LOC500503), mRNA."
Cytoskeletal protein -> Microtubule family cytoskeletal protein	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62078608-S	ILMN_279481	DYNC2LI1	NM_001013940.1	NM_001013940.1		298767	62078608	NM_001013940.1	Dync2li1	NP_001013962.1	ILMN_1352029	6590338	S	1290	CTGAAGGCCATCCAGGACCCAGCCCGGGACCCACAGTATGCAGAAAGTGA	6	+	8018969-8019018	6q12	"Rattus norvegicus dynein cytoplasmic 2 light intermediate chain 1 (Dync2li1), mRNA."	"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle [goid 5874] [evidence IEA]; A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole [goid 5929] [evidence IEA]; Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity [goid 30286] [evidence IEA]"	"The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon [goid 30030] [evidence IEA]"	"Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate [goid 3774] [evidence IEA]"	RGD1310286	RGD1310286
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_62657258-S	ILMN_262547	RGD1561210_PREDICTED	XM_001081590.1	XM_001081590.1		363690	109492116	XM_001081590.1	RGD1561210_predicted	XP_001081590.1	ILMN_1355900	6940500	S	224	GTTCCCATTCAGAGACCCCTGCCTTTCCAGGAGGAGCTTTTAAGGTCACT				10q32.1	"PREDICTED: Rattus norvegicus similar to Rpl7a protein (predicted) (RGD1561210_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62718814-S	ILMN_64270	LOC501486	XM_576892.1	XM_576892.1		501486	62718814	XM_576892.1	LOC501486	XP_576892.1	ILMN_1374561	2510180	S	1336	CATCCTGAACGAAAACAGCACTTGAGAGACAACTTGGGGGACTGCCTTTT					"PREDICTED: Rattus norvegicus hypothetical gene supported by BC082068 (LOC501486), mRNA."
	Protein metabolism and modification -> Proteolysis	Rattus norvegicus	RefSeq	GI_8394071-S	ILMN_265793	PSMA5	NM_017282.1	NM_017282.1		29672	8394071	NM_017282.1	Psma5	NP_058978.1	ILMN_1355230	2360110	S	702	GGAGGAGAAGCTGAACGCAACTAACATCGAGCTGGCCACAGTGCAGCCTG	2	+	203841927-203841959:203848140-203848156	2q34	"Rattus norvegicus proteasome (prosome, macropain) subunit, alpha type 5 (Psma5), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence IEA]; A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex [goid 5839] [evidence IEA]"	"The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome [goid 31145] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin ligase activity during the mitotic cell cycle [goid 51436] [evidence ISS]; Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the mitotic cell cycle [goid 51437] [evidence ISS]"	Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile [goid 4298] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62663520-S	ILMN_297241	LOC682504	XM_001061786.1	XM_001061786.1		682504	109505645	XM_001061786.1	LOC682504	XP_001061786.1	ILMN_1366020	2100373	S	1192	AGCCTGAGGAGGAAGATGGAGATGGAGTCTGGGGTGCTGGAGGCCAAGAA					"PREDICTED: Rattus norvegicus similar to Synaptonemal complex protein 2 (SCP-2) (Synaptonemal complex lateral element protein) (LOC682504), mRNA."
Miscellaneous function -> Other miscellaneous function protein	Apoptosis -> Induction of apoptosis	Rattus norvegicus	RefSeq	GI_16758491-S	ILMN_55240	DFFA	NM_053679.1	NM_053679.1		114214	16758491	NM_053679.1	Dffa	NP_446131.1	ILMN_1367916	1690037	S	891	TGGAGGTGCAGACGCACGTATGTGGATTCCTTCCCCTCGCTGACTCACAG				5q36	"Rattus norvegicus DNA fragmentation factor, alpha subunit (Dffa), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IDA]"	"The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments [goid 6309] [evidence IEA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis [goid 43066] [evidence IEA]"	Interacting selectively with an identical protein or proteins [goid 42802] [evidence IEA]	ICAD-S	ICAD-S
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Sensory perception -> Chemosensory perception -> Olfaction	Rattus norvegicus	RefSeq	GI_47576424-S	ILMN_277490	OLR1582	NM_001000079.1	NM_001000079.1		289240	47576424	NM_001000079.1	Olr1582	NP_001000079.1	ILMN_1354530	6020451	S	889	GAAGTTAAAGAGGCTCTACGAAAAGCCATAGGTCTTAGGCCCCTTTCCTC	13	+	89412022-89412071	13q24	"Rattus norvegicus olfactory receptor 1582 (Olr1582), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1582	Olr1582
		Rattus norvegicus	RefSeq	GI_62652536-S	ILMN_51074	LOC497822	XM_579625.1	XM_579625.1		497822	62652536	XM_579625.1	LOC497822	XP_579625.1	ILMN_1360085	3800184	S	1998	GGTGGAAGCCTGAAGCCAGCACTGCCAGGCTCCTTGGAGTACATGTGTCT					"PREDICTED: Rattus norvegicus hypothetical gene supported by NM_133555 (LOC497822), mRNA."
Transporter -> Other transporter;Hydrolase -> Other hydrolase	Lipid, fatty acid and steroid metabolism -> Lipid and fatty acid transport;Transport -> Lipid and fatty acid transport;Transport -> Ion transport -> Cation transport	Rattus norvegicus	RefSeq	GI_62664530-S	ILMN_62894	ATP8B1_PREDICTED	XM_214553.4	XM_214553.4		291555	109506708	XM_214553.4	Atp8b1_predicted	XP_214553.3	ILMN_1360542	1500630	S	4022	CATCATCGCAGATGGCACAGCGGAGTACCGACGCACAGTGGAGAGCTGAG	18	-	60749123-60749124:60749125-60749172	18q12.1	"PREDICTED: Rattus norvegicus ATPase, Class I, type 8B, member 1 (predicted) (Atp8b1_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47575910-S	ILMN_293124	OLR1466	NM_001000024.1	NM_001000024.1		287480	47575910	NM_001000024.1	Olr1466	NP_001000024.1	ILMN_1354329	3060288	S	240	ATTGTTGCAGAACATGCAGAGCCAGGACACATCCATCCTCTATGCAGGCT	10	+	60234449-60234498	10q24	"Rattus norvegicus olfactory receptor 1466 (Olr1466), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	Olr1466	Olr1466
		Rattus norvegicus	RefSeq	GI_62647511-S	ILMN_70112	LOC502791	XM_578290.1	XM_578290.1		502791	62647511	XM_578290.1	LOC502791	XP_578290.1	ILMN_1372888	70632	S	505	AGTATTGTCAGCAGGAGGATCAGGTCATGTATGCCACAGAGAACAGGGGC				4q31	"PREDICTED: Rattus norvegicus similar to Immunoglobulin kappa-chain VJ precursor (LOC502791), mRNA."
		Rattus norvegicus	RefSeq	GI_62653835-S	ILMN_49858	TRIP4_PREDICTED	XM_236360.3	XM_236360.3		315769	62653835	XM_236360.3	Trip4_predicted	XP_236360.3	ILMN_1351924	3190563	S	1876	CCCAGAAACAATTCCAGGAGCAGTTCCCGGACATCAGTCAAGAGTCTGAC					"PREDICTED: Rattus norvegicus thyroid hormone receptor interactor 4 (predicted) (Trip4_predicted), mRNA."
Nucleic acid binding -> Ribosomal protein	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_62660169-S	ILMN_293491	RGD1564069_PREDICTED	XM_001069553.1	XM_001069553.1		305202	109500331	XM_001069553.1	RGD1564069_predicted	XP_001069553.1	ILMN_1372353	2060086	S	431	GCACGGAGGCCGCACGTTGTCTAGAGTTACTGTACCAGCAGGAGTTTGTC				14p22	"PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S19 (predicted) (RGD1564069_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62652252-S	ILMN_59900	LOC366907	XM_345829.2	XM_345829.2		366907	62652252	XM_345829.2	LOC366907	XP_345830.2	ILMN_1364129	6370136	S	741	AACTGCACAGGTAGTGGATTCACAGGGGCATGCTGTGAGGCCTTGATGCC					"PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC366907), mRNA."
Cell adhesion molecule;Cell junction protein -> Other cell junction protein	Signal transduction -> Cell communication;Cell adhesion	Rattus norvegicus	RefSeq	GI_62643189-S	ILMN_263421	CTNND2	XM_001064375.1	XM_001064375.1		114028	109464561	XM_001064375.1	Ctnnd2	XP_001064375.1	ILMN_1362972	5080161	S	3552	CGCTGAAGACATCAAGCAGAACCAGGTTTCCACACAGCCTGTCCCCCAGG	2	+	83080472-83080496:83087694-83087718	2q22	"PREDICTED: Rattus norvegicus catenin (cadherin-associated protein), delta 2 (Ctnnd2), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A specialized region of connection between two cells or between a cell and the extracellular matrix [goid 30054] [evidence IEA]"	"The process by which the anatomical structures of branches are generated and organized. Morphogenesis pertains to the creation of form. A branch is a division or offshoot from a main stem. Examples in animals would include blood vessels, nerves, lymphatics and other endothelial or epithelial tubes [goid 1763] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult) [goid 7275] [evidence IEA]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence ISS]; Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience [goid 7612] [evidence IEA]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence ISS]; A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers [goid 48167] [evidence IEA]"	"The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule [goid 5488] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IPI]"
Receptor -> G-protein coupled receptor	Signal transduction -> Cell surface receptor mediated signal transduction -> G-protein mediated signaling;Neuronal activities	Rattus norvegicus	RefSeq	GI_62658660-S	ILMN_292103	RGD1559730_PREDICTED	XM_001075542.1	XM_001075542.1		501817	109515568	XM_001075542.1	RGD1559730_predicted	XP_001075542.1	ILMN_1362704	6370161	S	126	ACCTGTGACATTTCTGGCTTTGGAAAACCCCTTGGGGATGACACTGGCCA					"PREDICTED: Rattus norvegicus similar to putative pheromone receptor (Go-VN4) (predicted) (RGD1559730_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_38454249-S	ILMN_264913	VWA5A	NM_198755.1	NM_198755.1		301097	38454249	NM_198755.1	Vwa5a	NP_942050.1	ILMN_1348964	2650593	S	5410	CCATTGTTAATACTCTCCGGCCCACATTTTCACTGCTCCAGGGCATAGCC	8	+	40884453-40884502	8q22	"Rattus norvegicus von Willebrand factor A domain containing 5A (Vwa5a), mRNA."		"Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle [goid 45786] [evidence IEA]"		masa-1	masa-1
Kinase -> Protein kinase;Transferase	Protein metabolism and modification -> Protein modification -> Protein phosphorylation;Phosphate metabolism;Other metabolism	Rattus norvegicus	RefSeq	GI_62645584-S	ILMN_65925	PAK6_PREDICTED	XM_230519.4	XM_230519.4		296078	109468656	XM_230519.4	Pak6_predicted	XP_230519.3	ILMN_1362492	1500427	S	3429	AGCTTCAAACCCTGGAGTCCCAGAGGGCCATGGGGAAGGATTTCACTGCC	3	+	105192047-105192096	3q35	"PREDICTED: Rattus norvegicus p21 (CDKN1A)-activated kinase 6 (predicted) (Pak6_predicted), mRNA."
Transcription factor -> Basal transcription factor;Nucleic acid binding -> DNA-directed RNA polymerase;Transferase -> Nucleotidyltransferase	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription	Rattus norvegicus	RefSeq	GI_54262179-S	ILMN_302079	POLR2G	NM_053948.2	NM_053948.2		117017	54262179	NM_053948.2	Polr2g	NP_446400.1	ILMN_1356866	5130041	S	848	TGGCTCTCTGATGGATGACTACTTGGGACTTGTGAGCTGAGTGAGGGAGC	1	-	211462576-211462590:211462591-211462604:211462819-211462839	1q43	"Rattus norvegicus polymerase (RNA) II (DNA directed) polypeptide G (Polr2g), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; That part of the nuclear content other than the chromosomes or the nucleolus [goid 5654] [evidence ISS]"	"The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced [goid 398] [evidence ISS]; The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process involved in starting transcription from the RNA polymerase II promoter [goid 6367] [evidence ISS]; The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II [goid 6368] [evidence ISS]"	"Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo' [goid 3899] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]"	Rpb7; MGC72993; MGC72732	Rpb7; MGC72993; MGC72732
Nucleic acid binding -> Ribonucleoprotein	Nucleoside, nucleotide and nucleic acid metabolism	Rattus norvegicus	RefSeq	GI_62641721-S	ILMN_54791	RBM4_PREDICTED	XM_215201.4	XM_215201.4		293663	109459736	XM_215201.4	Rbm4_predicted	XP_215201.4	ILMN_1349390	2630463	S	1601	CCGAGCTGCGGTTGTGCATGAGAATACACCCTTCGTGGTACCCCATCTCC	1	-	207394516-207394565	1q42-q43	"PREDICTED: Rattus norvegicus RNA binding motif protein 4 (predicted) (Rbm4_predicted), mRNA."
Transferase -> Glycosyltransferase	Protein metabolism and modification -> Protein modification	Rattus norvegicus	RefSeq	GI_62647228-S	ILMN_56846	RGD1561171_PREDICTED	XM_575469.2	XM_575469.2		500117	109472028	XM_575469.2	RGD1561171_predicted	XP_575469.2	ILMN_1359998	6940735	S	1451	GTCATATGTCTGTAGCCATGGAACTCAGGAGGCTGGGGCAGGAGAGCTGC	4	+	77465932-77465981	4q24	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 6330407D12 (predicted) (RGD1561171_predicted), mRNA."
	Nucleoside, nucleotide and nucleic acid metabolism -> RNA localization;Cell cycle -> Other cell cycle process	Rattus norvegicus	RefSeq	GI_62665414-S	ILMN_276100	SPIRE2_PREDICTED	XM_001078003.1	XM_001078003.1		307925	109508946	XM_001078003.1	Spire2_predicted	XP_001078003.1	ILMN_1358413	5340577	S	2098	AGCCGCCAGACGCAGTCCCTCTATGTCCCCAACACCAGGACTCTCAACTT				19q12	"PREDICTED: Rattus norvegicus spire homolog 2 (Drosophila) (predicted) (Spire2_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_47576112-S	ILMN_286973	OLR1393	NM_001000524.1	NM_001000524.1		363585	47576112	NM_001000524.1	Olr1393	NP_001000524.1	ILMN_1361032	1230632	S	317	CTCTGGCCTCCACAGAATGTTTGATTTTGGTGGCAATGGCCTTCGACCGC	10	+	34852187-34852236	10q22	"Rattus norvegicus olfactory receptor 1393 (Olr1393), mRNA."	"Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence RCA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]"	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence RCA]; The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand [goid 7186] [evidence IEA]; The series of events involved in the perception of smell in which an olfactory chemical stimulus is received by a cell and converted into a molecular signal [goid 50911] [evidence RCA]	Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence RCA]; Combining with airborne compounds to initiate a change in cell activity. These receptors are used for the sense of smell [goid 4984] [evidence IEA]	ratchr10-34852920-34853855_ORF; Olr1393	ratchr10-34852920-34853855_ORF; Olr1393
		Rattus norvegicus	RefSeq	GI_62661470-S	ILMN_66536	LOC498516	XM_579831.1	XM_579831.1		498516	62661470	XM_579831.1	LOC498516	XP_579831.1	ILMN_1363398	2060128	S	371	TCACGGTCAGAACTGGGGTGACTGGGATGATGAAGGTGGGGGACTGGCTT					"PREDICTED: Rattus norvegicus LOC498516 (LOC498516), mRNA."
		Rattus norvegicus	RefSeq	GI_62659806-S	ILMN_263849	RGD1563749_PREDICTED	XR_009586.1	XR_009586.1		289194	109498985	XR_009586.1	RGD1563749_predicted		ILMN_1360274	6520086	S	684	AAAGCCCGAGATTCAAACCAAGGCAGAGGCTAAGGCCCAGGGTGCAGCTC				13q23	"PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29 (P23) (predicted) (RGD1563749_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62663967-S	ILMN_273372	RGD1563437_PREDICTED	XM_001069190.1	XM_001069190.1		291356	109506150	XM_001069190.1	RGD1563437_predicted	XP_001069190.1	ILMN_1348930	5550465	S	6625	GAAAGTAGCGTGCTAGACTCTAAGCCAATGAGCTCCTACAGCCCGTAGAG				17q12.3	"PREDICTED: Rattus norvegicus similar to KIAA1217 (predicted) (RGD1563437_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62641416-S	ILMN_62211	LOC365316	XM_344926.2	XM_344926.2		365316	62641416	XM_344926.2	LOC365316	XP_344927.2	ILMN_1367713	3140164	S	693	CTGGGCAGTGGGAACTCAGCCTCACACCAGGCACTAGACAGTGTGAACTC					"PREDICTED: Rattus norvegicus similar to Hornerin (LOC365316), mRNA."
		Rattus norvegicus	RefSeq	GI_62649073-S	ILMN_55844	LOC298008	XM_232926.3	XM_232926.3		298008	62649073	XM_232926.3	LOC298008	XP_232926.3	ILMN_1374083	5130059	S	87	CCCCGACCCTGGACATCTTATGGTGAACTGAAAGGACCCAGCGAATCTGG					"PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L18 (LOC298008), mRNA."
Miscellaneous function -> Other miscellaneous function protein	Protein metabolism and modification -> Other protein metabolism;Developmental processes -> Other developmental process	Rattus norvegicus	RefSeq	GI_62642393-S	ILMN_284059	FBXW4_PREDICTED	XM_001058429.1	XM_001058429.1		309444	109463941	XM_001058429.1	Fbxw4_predicted	XP_001058429.1	ILMN_1350234	1050088	S	2303	TTGGGGCTCTGGGCTGGCTGCTCCTTAGGCCAGTTGTGGGAGACATGTTA				1q54	"PREDICTED: Rattus norvegicus F-box and WD-40 domain protein 4 (predicted) (Fbxw4_predicted), mRNA."
Select regulatory molecule -> G-protein	Protein metabolism and modification -> Proteolysis;Signal transduction	Rattus norvegicus	RefSeq	GI_62640724-S	ILMN_51328	RGD1560280_PREDICTED	XM_218798.4	XM_218798.4		308724	109458930	XM_218798.4	RGD1560280_predicted	XP_218798.4	ILMN_1370447	6290070	S	1376	CCCTCACCTTTGCTGTCACCTTCCCACACAATGAGGATGCCTGCTATCTG	1	-	131770047-131770096	1q31	"PREDICTED: Rattus norvegicus similar to hypothetical protein D430020F16 (predicted) (RGD1560280_predicted), mRNA."
Receptor	Signal transduction -> Cell surface receptor mediated signal transduction;Developmental processes -> Ectoderm development -> Neurogenesis	Rattus norvegicus	RefSeq	GI_62645042-S	ILMN_267209	OLFML2A_PREDICTED	XM_001060614.1	XM_001060614.1		296708	109469836	XM_001060614.1	Olfml2a_predicted	XP_001060614.1	ILMN_1362773	7050372	S	2151	GTGCGGCATCCTCTACACGGTGGACACTTACAACCAGCATGAAGGCCAAG				3q11	"PREDICTED: Rattus norvegicus olfactomedin-like 2A (predicted) (Olfml2a_predicted), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_56605699-S	ILMN_289376	BTF3	NM_001008309.1	NM_001008309.1		294680	56605699	NM_001008309.1	Btf3	NP_001008310.1	ILMN_1362163	6980110	S	440	GGTGCAGACAGTCTGACCAGTTTGAGGAGACTGGCTGAAGCTCTGCCCAA	2	-	28904061-28904110	2q12	"Rattus norvegicus basic transcription factor 3 (Btf3), mRNA."		"The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth [goid 1701] [evidence ISS]"	Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]	MGC106007	MGC106007
		Rattus norvegicus	RefSeq	GI_62662369-I	ILMN_48314	CALR3_PREDICTED	XM_573877.1	XM_573877.1		364529	62662369	XM_573877.1	Calr3_predicted	XP_573877.1	ILMN_1375963	7050017	S	1409	GGTCGTTTGTCCGGGTTCTGAAAAACAATCCTGTTTGTGATGGGGTCCCC				16p14	"PREDICTED: Rattus norvegicus calreticulin 3 (predicted) (Calr3_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_34871304-S	ILMN_65171	LOC287248	XM_220416.2	XM_220416.2		287248	34871304	XM_220416.2	LOC287248	XP_220416.2	ILMN_1362456	4920064	S	1880	CACAGATACCCAAGTTCAGCAAGAAGACCCAAGGAATGGCCTCCCCACAC					"PREDICTED: Rattus norvegicus similar to Nuclear envelope pore membrane protein POM 121 (Pore membrane protein of 121 kDa) (LOC287248), mRNA."
		Rattus norvegicus	RefSeq	GI_62655963-S	ILMN_64199	LOC497884	XM_573069.1	XM_573069.1		497884	62655963	XM_573069.1	LOC497884	XP_573069.1	ILMN_1361620	6660059	S	1356	TTGGGCTGTGCACAAGTGGGAGCTGTGCAGGCAAAGATGCAGGGAGGGGT					"PREDICTED: Rattus norvegicus similar to hypothetical protein SP192 (LOC497884), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62655347-S	ILMN_64640	ARMC9_PREDICTED	XM_217465.4	XM_217465.4		301579	109486311	XM_217465.4	Armc9_predicted	XP_217465.4	ILMN_1359934	3360494	S	1248	TTGCCCGAGGCCCATACCAGTCGCTCAGCCAGATGACTACAAAGAGGGCA	9	+	85019601-85019650	9q35	"PREDICTED: Rattus norvegicus armadillo repeat containing 9 (predicted) (Armc9_predicted), mRNA."
Cytoskeletal protein -> Intermediate filament;Miscellaneous function -> Structural protein	Cell structure and motility -> Cell structure	Rattus norvegicus	RefSeq	GI_47087084-S	ILMN_62108	KRT17	NM_212545.2	NM_212545.2		287702	71896558	NM_212545.2	Krt17	NP_997710.1	ILMN_1357492	4570195	S	1227	GATGCCCACCTGACTCAGTACAAGCCAAAAGAACCTGTGACCACCCGCCA	10	-	89185327-89185343:89186169-89186194:89186281-89186287	10q32.1	"Rattus norvegicus keratin 17 (Krt17), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence ISS]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles [goid 5856] [evidence ISS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence TAS]; A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins [goid 5882] [evidence IEA]; A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins [goid 45095] [evidence TAS]"	"The process by which the anatomical structures of epithelia are generated and organized. Morphogenesis pertains to the creation of form. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube [goid 2009] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of cell growth [goid 30307] [evidence ISS]; The process in which the cytoplasm of the outermost cells of the vertebrate epidermis is replaced by keratin. Keratinization occurs in the stratum corneum, feathers, hair, claws, nails, hooves, and horns [goid 31424] [evidence ISS]; Any cellular process that depends upon or alters the intermediate filament cytoskeleton, that part of the cytoskeleton comprising intermediate filaments and their associated proteins [goid 45103] [evidence TAS]; Control of the spatial distribution of intermediate filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking [goid 45109] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA [goid 45727] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of hair follicle development [goid 51798] [evidence ISS]"	The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell [goid 5198] [evidence IEA]; The action of a molecule that contributes to the structural integrity of a cytoskeletal structure [goid 5200] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]
Transcription factor	Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Immunity and defense;Other metabolism	Rattus norvegicus	RefSeq	GI_51948391-S	ILMN_284914	XBP1	NM_001004210.1	NM_001004210.1		289754	51948391	NM_001004210.1	Xbp1	NP_001004210.1	ILMN_1373017	2260136	S	1603	CCTTCTACAAGCAGAGAAACAGCAACCTGAGGGGCCTGTCCTTCCTTATG	14	+	86156756-86156805	14q21	"Rattus norvegicus X-box binding protein 1 (Xbp1), mRNA."	"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]"	"The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence TAS]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA]; The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation [goid 30968] [evidence IDA]"	"Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence TAS]; The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex [goid 3700] [evidence IEA]; Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding [goid 43565] [evidence IEA]; The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits [goid 46983] [evidence IEA]"	HTF	HTF
Phosphatase -> Nucleotide phosphatase	Nucleoside, nucleotide and nucleic acid metabolism -> Purine metabolism	Rattus norvegicus	RefSeq	GI_62661680-S	ILMN_55575	ENTPD4_PREDICTED	XM_341346.3	XM_341346.3		361063	109501708	XM_341346.3	Entpd4_predicted	XP_341347.2	ILMN_1362557	5890471	S	1822	TACAGGACCCGCTTTCTGCCCTTGAGAGACATCCGACAGGAGGTGTTCCG	15	+	49954410-49954435:49955440-49955463	15p11	"PREDICTED: Rattus norvegicus ectonucleoside triphosphate diphosphohydrolase 4 (predicted) (Entpd4_predicted), mRNA."
		Rattus norvegicus	RefSeq	GI_62718688-S	ILMN_53646	LOC306450	XM_224840.3	XM_224840.3		306450	62718688	XM_224840.3	LOC306450	XP_224840.3	ILMN_1375054	3170148	S	3593	TGCTTGCTTTCTCGGTAGTCATGGGAGGAAGAGGAAGGACAGACAGCGGC					"PREDICTED: Rattus norvegicus similar to Ten-m3 (LOC306450), mRNA."
Nucleic acid binding;Synthase and synthetase -> Synthetase;Transferase -> Nucleotidyltransferase;Defense/immunity protein	Nucleoside, nucleotide and nucleic acid metabolism;Immunity and defense -> Interferon-mediated immunity;Other metabolism	Rattus norvegicus	RefSeq	GI_21426776-S	ILMN_286757	OAS1B	NM_144752.1	NM_144752.1		246268	21426776	NM_144752.1	Oas1b	NP_653353.1	ILMN_1362940	4010079	S	1984	GGGCCATGGGGACTGTGTTATGGGACCAGAAATGGAAAGATGACCAGCGA	12	-	36858734-36858783	12q16	"Rattus norvegicus 2-5 oligoadenylate synthetase 1B (Oas1b), mRNA."		"Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat [goid 6955] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus [goid 9615] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of the viral life cycle, the set of processes by which a virus reproduces and spreads among hosts [goid 48525] [evidence IEA]"	"Catalysis of the reaction: ATP = pppA(2'p5'A)n oligomers. Requires binding of double-stranded RNA [goid 1730] [evidence IEA]; Interacting selectively with double-stranded RNA [goid 3725] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 5524] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]"	MGC108585; 2'5'oligoadenylatesynthetase-2	MGC108585; 2'5'oligoadenylatesynthetase-2
Miscellaneous function	Protein metabolism and modification -> Protein biosynthesis	Rattus norvegicus	RefSeq	GI_11968085-S	ILMN_286179	RPL4	NM_022510.1	NM_022510.1		64302	11968085	NM_022510.1	Rpl4	NP_071955.1	ILMN_1370009	1990102	S	1055	TGCGTAGGAACACCATTCTCCGCCAGGCTAGGAATCACAAACTTCGAGTG	8	+	68371382-68371416:68371628-68371642	8q24	"Rattus norvegicus ribosomal protein L4 (Rpl4), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [evidence ISS]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]"	"The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [evidence ISS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA]"	"The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced [goid 16491] [evidence IEA]"
		Rattus norvegicus	RefSeq	GI_62667078-S	ILMN_65373	LOC501593	XM_580216.1	XM_580216.1		501593	62667078	XM_580216.1	LOC501593	XP_580216.1	ILMN_1362485	1740215	S	141	CTTGTCTCACCGGAAGACCTACATAGCTGGCATCCACTGTGCCGACAGCC					"PREDICTED: Rattus norvegicus LOC501593 (LOC501593), mRNA."
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_62658793-S	ILMN_70310	RGD1559988_PREDICTED	XM_222107.4	XM_222107.4		288622	109495693	XM_222107.4	RGD1559988_predicted	XP_222107.4	ILMN_1359028	5390025	S	2210	GCTTGTCGTGGAAGACGACCTCCGGTGTGCTCTCGCAAAGACTACCCCAA	12	-	27856010-27856059	12q13	"PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410018M08 (predicted) (RGD1559988_predicted), mRNA."
Miscellaneous function -> Other miscellaneous function protein	Signal transduction -> Intracellular signaling cascade -> NF-kappaB cascade;Apoptosis -> Induction of apoptosis	Rattus norvegicus	RefSeq	GI_11560138-S	ILMN_288684	CARD9	NM_022303.1	NM_022303.1		64171	11560138	NM_022303.1	Card9	NP_071639.1	ILMN_1370875	3990280	S	1660	ACAGGGAGAAGGGGATCACGGGAATACGACAGGCAGCGACAACACCGACA	3	-	4524916-4524965	3p13	"Rattus norvegicus caspase recruitment domain family, member 9 (Card9), mRNA."	"The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]"	"A series of reactions initiated by the activation of the transcription factor NF-kappaB. NF-kappaB is sequestered by the inhibitor I-kappaB, and is released when I-kappaB is phosphorylated by activated I-kappaB kinase [goid 7249] [evidence IMP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus [goid 9620] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus [goid 9620] [evidence IEA]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptidoglycan stimulus. Peptidoglycan is a bacterial cell wall macromolecule [goid 32494] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muramyl dipeptide stimulus. Muramyl dipeptide is derived from peptidoglycan [goid 32495] [evidence ISS]; A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muramyl dipeptide stimulus. Muramyl dipeptide is derived from peptidoglycan [goid 32495] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of interleukin-6 production [goid 32755] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of interleukin-6 production [goid 32755] [evidence IEA]; Any process that activates or increases the frequency, rate, or extent of tumor necrosis factor production [goid 32760] [evidence ISS]; Any process that activates or increases the frequency, rate, or extent of tumor necrosis factor production [goid 32760] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade [goid 32874] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade [goid 32874] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade [goid 32874] [evidence IEA]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease [goid 42493] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of tumor necrosis factor, an inflammatory cytokine produced by macrophages/monocytes during acute inflammation and which is responsible for a diverse range of signaling events within cells, leading to necrosis or apoptosis [goid 42534] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of tumor necrosis factor, an inflammatory cytokine produced by macrophages/monocytes during acute inflammation and which is responsible for a diverse range of signaling events within cells, leading to necrosis or apoptosis [goid 42534] [evidence IEA]; Any process that modulates the occurrence or rate of cell death by apoptosis [goid 42981] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of an I-kappaB kinase/NF-kappaB induced cascade [goid 43123] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an exogenous double-stranded RNA stimulus [goid 43330] [evidence ISS]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an exogenous double-stranded RNA stimulus [goid 43330] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-2 [goid 45076] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-2 [goid 45076] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the innate immune response, the organism's first line of defense against infection [goid 45089] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of the innate immune response, the organism's first line of defense against infection [goid 45089] [evidence IEA]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-6 [goid 45408] [evidence ISS]; Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-6 [goid 45408] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence ISS]; Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade [goid 46330] [evidence IEA]; Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism [goid 50830] [evidence ISS]; Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism [goid 50830] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB [goid 51092] [evidence ISS]; Reactions triggered in response to the presence of a virus that act to protect the cell or organism [goid 51607] [evidence ISS]; Reactions triggered in response to the presence of a virus that act to protect the cell or organism [goid 51607] [evidence IEA]"	"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with a specific domain of a protein [goid 19904] [evidence IMP]; Interacting selectively with an identical protein to form a homodimer [goid 42803] [evidence ISS]; Interacting selectively with a CARD (N-terminal caspase recruitment) domain, a protein-protein interaction domain that belongs to the death domain-fold superfamily. These protein molecule families are similar in structure with each consisting of six or seven anti-parallel alpha-helices that form highly specific homophilic interactions between signaling partners. CARD exists in the N-terminal prodomains of several caspases and in apoptosis-regulatory proteins and mediates the assembly of CARD-containing proteins that participate in activation or suppression of CARD carrying members of the caspase family [goid 50700] [evidence ISS]"
Molecular function unclassified	Biological process unclassified	Rattus norvegicus	RefSeq	GI_56090603-S	ILMN_267171	CXXC5	NM_001007628.1	NM_001007628.1		291670	56090603	NM_001007628.1	Cxxc5	NP_001007629.1	ILMN_1360192	5690670	S	1660	CTTGCTCACAGCAGCAGAAGAAAGGGCTTCTTTTCGTGGTCCCCTGCTGG	18	+	28487313-28487362	18p11	"Rattus norvegicus CXXC finger 5 (Cxxc5), mRNA."			Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]	MGC94398	MGC94398
Receptor -> Ligand-gated ion channel -> Acetylcholine receptor;Ion channel -> Ligand-gated ion channel -> Acetylcholine receptor;Transporter -> Cation transporter	Signal transduction -> Cell communication;Transport -> Ion transport -> Cation transport;Neuronal activities -> Synaptic transmission -> Neuromuscular synaptic transmission;Muscle contraction	Rattus norvegicus	RefSeq	GI_6978656-S	ILMN_263413	CHRNB1	NM_012528.1	NM_012528.1		24261	6978656	NM_012528.1	Chrnb1	NP_036660.1	ILMN_1372351	5080750	S	2148	GGCTACTGTAAGGTCCCCAGCAATGCGCACAGGTCCTACCCCATAAGTGC	10	-	56604985-56605034	10q24	"Rattus norvegicus cholinergic receptor, nicotinic, beta 1 (muscle) (Chrnb1), mRNA."	"The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence ISS]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; A protein complex that acts as an acetylcholine receptor, and forms a transmemb